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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071157 ID=TCONS_00071157|Name=TCONS_00071157|organism=Clytia hemisphaerica|type=transcript|length=2050bp
CGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTTCCA
TTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGGTAGGGTTAAA
GTACAGATGAATTGTATCAGCATTGGACAATGAAATATGAAAATAGATGa
ctaaaattgataaaaattgctATAACTCAATCTAAGATGTGGTGGTTTGC
CTTGGTGTTGTTGATTCATGGGTCTCACGGAGATGCTCAGCATGCTGCCA
AGAAATCACTACACCGAAGATTAAGTGATTATCCTGTACTCAAACGTTGG
GAGATACCAATCAAAGCTAACGTCGTTGGTCGAAGAAACAAAGACTTATG
GGGAGACTCGAAAAAGAAACGTTCATTTTGGGAGGCAAAGCCCCAGTTTA
CACTACATGAGCTTGAAATGGAAAACGATCCAGAGAAGATATATATGGAT
TTACACTATTCAAGAAATATGCTTGAAGACGATTCTGACGCAGATAAAAG
TATTGCACAATATAAGAAAGATACATTGGAGTCGCCACCGTTGTTAAAGA
CTTCTGCGAAGAAGGCAGAGGTTAAAAAGAAAGATGGTAAAAAGTTACTC
CAACAAAAAGTAACAAAACATAAGGAAGCAGACAAGAAAAGATTAATTGC
ATTAAAACCTTTCTTGTCAGCCAAACACGTGACAACATCaacgaaaaaga
agaagaaaaagagaagCAGAAGATCATTGGAGGATGAGGAGTTTGAAGAA
ATTAATACTGATGATGGAGACTTTTCAATGGCGGGTTTCCAAGATGGTTT
GATAGATGAAAGAGAAGATGCAGAGAGAGTCAAACGTGATTCTGAATCAA
TCGCTAACTTCTATTTTGACCAATACGATGATGATGGTGTTGATGGTAAC
GAAGCTGAAACTTACAGTAAAAATAATGGTAATAATGTTGATGATGATAC
CCCTTCTCAAGATCGACAAAAAAGATCCATTGTTAACAAACCTAAAGATC
ATAAACTTGCCGTTGATAATTTGAAACGATCACGTACAGAAAATATTGCA
AAACTGTTTCATAAATCAGTAGCAAAGACACATTCTGCCATCGATGCTTC
AGCCAAACGATCAAGTTTGTCTTCTAATATTGTTACTTCCAAGGCTGTTA
GTAAAACTGACGGTGATTCTGCTGAGCAAAGAAAAGCTAAAGCTTTGATT
CAAAAGGCATTTTTCAGTTCAAAACAATAAAGAAGATAGTCCCTAATGTT
GATGTTAAAGTTATATCAAAGAATCTTCTAGAACAAGATATTGGAGCTGT
ACCAGGTcttaaaaaagatgaaaattcagTAAGCAGGCAACATATAGCAC
ATCCAGAAAAATCAACGGATAGTATAAACACAGCAAATGTTGCACGTGCA
GTTGCAGTGGCAATGGAACAATTAAAAAGAGATAAAATGTGGGGCAAAGT
ATTTGTCCATGTTAGACCAAGTGGTGAACTTAAGGTTATGGTACAAGAAA
CTAAAAAGATGGAAGAAGAGACTTGAAACTATATTGATATCTTGAATAAA
TAATCTTTTGTACATTTGTATTAAACGTTTTTACTTTTCTAGAATTTTAC
AGTGGGGATTAAGATTTCTATCGAAACCCTAACGAGCGAGGATAAAACTC
TTTTGTTCCGAGCTCAAAATGTCCAGTGGAGATGGATTTGGAGTGCAAGt
tcttttcatcaatttttgaatgaggatgcaatcaaaatgaatttccCAGT
GGACCTCAAATTGTAGAAAGCTCTTTCCAACTGGGGATGAAATTCTAACC
AAATCTCCCGATGCGCTTGGGGTTCCCACCGGGTTCGTGACAAAGGGTTT
TTTCTAGATATGACAGTAATAACCAGTAGTGAAGGCattaaattaatttt
gttatctttaaattttttagacCTAGTTCTTATAGtaatatattgaaaat
aaaacttacgaatactttttttaaatgcacCTTTAACAAGTTTATAGAAA
TCAAGTAAGGATTAATCATTGTTATTAATATTCCAAGGGTTCCAAAATCc Run BLAST on NCBI transcript from alignment at scaffold_6:69787..73333- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071157 ID=TCONS_00071157|Name=TCONS_00071157|organism=Clytia hemisphaerica|type=transcript|length=3547bp|location=Sequence derived from alignment at scaffold_6:69787..73333- (Clytia hemisphaerica)
CGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTTCCA
TTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGGTAGGGTTAAA
GTACAGATGAATTGTATCAGCATTGGACAATGAAATATGAAAATAGATGA
CTAAAATTGATAAAAATTGCTATAAGTATAAAAATATGTTGAATTATATT
GAAGTTCTTTGAAATTTTGTTTCGTTTAGCATTAAAATTTCGATTTTTTT
ATATTATAGCTTATAAGCTTCTCAAAGCTAAAAAAACCTCAATCCAAGCT
AGGCTGAAAGGATTCTTCTATATTTCAGCTCAATCTAAGATGTGGTGGTT
TGCCTTGGTGTTGTTGATTCATGGGTCTCACGGAGATGCTCAGCATGGTA
AGATCTTCTTGTTTAAAAAAATTAGCTGTTGGATATTTGCATATTAGCAT
ATCATAAAATTCCAAATTAAAGTATTCAGCCTTGTCACATTCTGTACAAG
TACTACAATCCCGGTCATAATATTTAAGAAAAAAAGGGAAATTCCCACGA
AATCTCATAGCCACAAACGATTTGGAAGCGCTTTAACTTACTTAGGATCT
GAGGATCCAAAAGTTCAAGAATGGTCCAAAAGGGCTGCGAATATAGCCTG
GAAGTCTATAAACCCCACTCAATTTGCAATATTCGATTAAATTTAACAAT
GAAATAGCCCAAAAGCGACTTTCTCGCCCGAACTTTAATATGCTAAAAAC
GAGGAATTAGCCAAATTTATCAATATATTTTGATATTGTAGGTTTTTATT
AATAATTGGGGAACATCCTACACTGTCGAATTAAACATCTACTCATAATA
CACCACATTTTACACCTCCTTCTCGGTGGAACCAATTCAGCCAGTAGGGG
TAAAAATAACGGACCAAAACTCGATGGGGATTAATATTCTCATTTTCTTA
TGGTTGGGGATTTGAATTCTATTGTTTTTGAGCCAGAAAATCCAGTGGGG
ATGGAAAAAGTAGCACAATATTTTGCAGTGACGATTTAATTATCTGATTA
TTTTCAGCGAAGGCAAGAGTTAAAATATAATTTTCTACTGGGTACGATAT
TTTGGCCAATTTTTCCAATGAGTCTCATCGGGTATGTGAGAAGGGGGTAT
CATTAAAATGTGTTCACACCACGTTAAATTCGTAGTCTGATTGTGTATGT
AACGGTGGACGTTATGGCCCTATGACTAACCATATATCTATAACCAGATA
TCCAAGCCTTGTCTTTCATCTAACTACAGCTTCAAGGAGTGCCTAAAGAA
TTTTCATATTCAAGGCCATTCTTCACAGTGGCTTTTTGATGCATTAAACT
GTCTCGTTTCAATGTTTTGTATTCTTATTTTTAAATTTCTTTCGTGATCC
TGAAAATAGAAAAGTAAGTTAAAATATACCGTAATCAAAATCTGGGAAAG
TTTGATTAGCTCTTGATCTATTGCTAGGGGCTCATCTAAAGAACATCCCC
ACCCCTTTACGAATATAATTTATTTCACTTTTTTAAAACTCGATCATCAA
TCGGCTGAAATCTAAAAACTCGTAGCATCAAAAGCTTTACGTTTTTATTG
TAATATTTACATAATCTATGTTTAGCTGCCAAGAAATCACTACACCGAAG
ATTAAGTGATTATCCTGTACTCAAACGTTGGGAGATACCAATCAAAGCTA
ACGTCGTTGGTCGAAGAAACAAAGACTTATGGGGAGACTCGAAAAAGAAA
CGTTCATTTTGGGAGGCAAAGCCCCAGTTTACACTACATGAGCTTGAAAT
GGAAAACGATCCAGAGAAGATATATATGGATTTACACTATTCAAGAAATA
TGCTTGAAGACGATTCTGACGCAGATAAAAGTATTGCACAATATAAGAAA
GATACATTGGAGTCGCCACCGTTGTTAAAGACTTCTGCGAAGAAGGCAGA
GGTTAAAAAGAAAGATGGTAAAAAGTTACTCCAACAAAAAGTAACAAAAC
ATAAGGAAGCAGACAAGAAAAGATTAATTGCATTAAAACCTTTCTTGTCA
GCCAAACACGTGACAACATCAACGAAAAAGAAGAAGAAAAAGAGAAGCAG
AAGATCATTGGAGGATGAGGAGTTTGAAGAAATTAATACTGATGATGGAG
ACTTTTCAATGGCGGGTTTCCAAGATGGTTTGATAGATGAAAGAGAAGAT
GCAGAGAGAGTCAAACGTGATTCTGAATCAATCGCTAACTTCTATTTTGA
CCAATACGATGATGATGGTGTTGATGGTAACGAAGCTGAAACTTACAGTA
AAAATAATGGTAATAATGTTGATGATGATACCCCTTCTCAAGATCGACAA
AAAAGATCCATTGTTAACAAACCTAAAGATCATAAACTTGCCGTTGATAA
TTTGAAACGATCACGTACAGAAAATATTGCAAAACTGTTTCATAAATCAG
TAGCAAAGACACATTCTGCCATCGATGCTTCAGCCAAACGATCAAGTTTG
TCTTCTAATATTGTTACTTCCAAGGCTGTTAGTAAAACTGACGGTGATTC
TGCTGAGCAAAGAAAAGCTAAAGCTTTGATTCAAAAGGCATTTTTCAGTT
CAAAACATGGGCACTTGGTACCAAAAACCTCCGTTCGTCATATAATTCCA
CAAAGCTCANAAACATGGGCACTTAGTACCAAAAACCTCCGTTCGTCATA
TAATCCCAGAAAGCTCGACAACAATAAAGAAGATAGTCCCTAATGTTGAT
GTTAAAGTTATATCAAAGAATCTTCTAGAACAAGATATTGGAGCTGTACC
AGGTCTTAAAAAAGATGAAAATTCAGTAAGCAGGCAACATATAGCACATC
CAGAAAAATCAACGGATAGTATAAACACAGCAAATGTTGCACGTGCAGTT
GCAGTGGCAATGGAACAATTAAAAAGAGATAAAATGTGGGGCAAAGTATT
TGTCCATGTTAGACCAAGTGGTGAACTTAAGGTTATGGTACAAGAAACTA
AAAAGATGGAAGAAGAGACTTGAAACTATATTGATATCTTGAATAAATAA
TCTTTTGTACATTTGTATTAAACGTTTTTACTTTTCTAGAATTTTACAGT
GGGGATTAAGATTTCTATCGAAACCCTAACGAGCGAGGATAAAACTCTTT
TGTTCCGAGCTCAAAATGTCCAGTGGAGATGGATTTGGAGTGCAAGTTCT
TTTCATCAATTTTTGAATGAGGATGCAATCAAAATGAATTTCCCAGTGGA
CCTCAAATTGTAGAAAGCTCTTTCCAACTGGGGATGAAATTCTAACCAAA
TCTCCCGATGCGCTTGGGGTTCCCACCGGGTTCGTGACAAAGGGTTTTTT
CTAGATATGACAGTAATAACCAGTAGTGAAGGCATTAAATTAATTTTGTT
ATCTTTAAATTTTTTAGACCTAGTTCTTATAGTAATATATTGAAAATAAA
ACTTACGAATACTTTTTTTAAATGCACCTTTAACAAGTTTATAGAAATCA
AGTAAGGATTAATCATTGTTATTAATATTCCAAGGGTTCCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071157-exon-scaffold_6-1575043694:73159..73333 | TCONS_00071157-exon-scaffold_6-1575043694:73159..73333 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1575043694:72937..73005 | TCONS_00071157-exon-scaffold_6-1575043694:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1575043694:70728..71708 | TCONS_00071157-exon-scaffold_6-1575043694:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1575043694:69787..70611 | TCONS_00071157-exon-scaffold_6-1575043694:69787..70611 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1510915933:73159..73333 | TCONS_00071157-exon-scaffold_6-1510915933:73159..73333 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1510915933:72937..73005 | TCONS_00071157-exon-scaffold_6-1510915933:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1510915933:70728..71708 | TCONS_00071157-exon-scaffold_6-1510915933:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1510915933:69787..70611 | TCONS_00071157-exon-scaffold_6-1510915933:69787..70611 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1491911889:73159..73333 | TCONS_00071157-exon-scaffold_6-1491911889:73159..73333 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1491911889:72937..73005 | TCONS_00071157-exon-scaffold_6-1491911889:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1491911889:70728..71708 | TCONS_00071157-exon-scaffold_6-1491911889:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071157-exon-scaffold_6-1491911889:69787..70611 | TCONS_00071157-exon-scaffold_6-1491911889:69787..70611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:69787..73333 - |
Blast
The following BLAST results are available for this feature:
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