TCONS_00006586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006586
Unique NameTCONS_00006586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006586 ID=TCONS_00006586|Name=TCONS_00006586|organism=Clytia hemisphaerica|type=transcript|length=1514bp
TCTTCCTCCACGCTTCGTTGATTAAATGTATATTGTTTTGCACGCTCGAG
TAACCACGCCTCAGCTCAGCTTTTTCATTTCAACTTTTGCAAAAATACTG
TCTGGAACTACTGAATATTTTTTTcgtgataaaaattttcagggGGTATG
GACAAATTACGGGGTATGAAGACACCTCAGTTGTGTCGAGAAGCCTTGGC
TGAATTTATGGGAACACTCGTTCTTTGTACTTTCGGAGTAGGTAGTGTCG
CACAATTTGTATTGGCTAAACAAGACTTCGGAGGATATTGGTCCGTCAAT
TGGGGATGGGGTCTTGGCGTCGCTTTTGGTATCTACTGGTCCGGTGGCAT
CTCAGgTGGGCACATCAACCCAGCCGTTTCTTTCGCCCTTGCTGTTTGTG
GGCGTTTCAAATGGCACAAAGTTCCAGTATACTGGATTGCCCAAATGTTG
GGCGCTATCATTGGTTCCGCCCTTGCTTTTGGTGTTTACCATGATTATTT
GGTTGAATTTTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACGGAACAG
CTGGAATCTGGTCCACCTACCCACCTGATCACGTCTCTAACTGGACTGGT
TTCGCTGATCAAGTTTTGGGGACCGCTTTATTCGTGGGAACCATTTTCGC
CCTTTTGGATTCGAAAAACATTGGTGTTGGTAGCAACATTGCGCCATTTT
TAATTGGTTTGATCGTCCTCACCATGGGAACAACTTTTGGTATCAACGCT
GGATTTGGATTGAACCCTGCAAGAGATTTGGGACCAAGAATCTTTACCGC
TATTGCTGGATGGGGTGGAACGCCTTTCTCAGCTCACAATAACTGGTGGA
TCTACCCTGTTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTTTGGCT
TACGAATTGACAATCGCTATTCACCATGAAGTCGATGAAGAGGAAGCTTC
TGTGGCGGAAGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGGTTCAA
ACTCAAAAGAAGGTTCACCACGCCCTAAAGagtaaatttgaaatgaaaat
gatgcgaaatttgttatttgaaatatttttttctgacacTCAAGTTCTAT
GTTTGAGTTTgtgtcaaaaaaattacaatcgaATCCTTttgtaaaaagaa
atttcaagtaTCTCTTTTCGTTGATTTGGAAGTGGCTCGGTGTGAAGTCC
GCCAGGTTTGATTGATTGGCTCATTGATCGATTGATCTCGATTATGGTCT
CGATTAGTTTCGATTGGTTTACAAAATCTGCTTTTTCATTACGCTGTATT
CcaatattttGTTggattttttcaatcttttctcTTTTCATATTGAATAT
TTAACATACTAAAAACCCGTTTCATTTGAAATGTATTTATTTCGAGAGGG
AATTTTTCTATCAtctatatcataaataaatttaaaGGAAATTGCACCAc
aagttttaattttgaaaggATCAAGGGTTGTACGATGGGGTGGGTGAAGG
TGGTAAGATGGGGC
Run BLAST on NCBI

protein sequence of TCONS_00006586-protein

>TCONS_00006586-protein ID=TCONS_00006586-protein|Name=TCONS_00006586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MDKLRGMKTPQLCREALAEFMGTLVLCTFGVGSVAQFVLAKQDFGGYWSV
NWGWGLGVAFGIYWSGGISGGHINPAVSFALAVCGRFKWHKVPVYWIAQM
LGAIIGSALAFGVYHDYLVEFSGSERLTSGANGTAGIWSTYPPDHVSNWT
GFADQVLGTALFVGTIFALLDSKNIGVGSNIAPFLIGLIVLTMGTTFGIN
AGFGLNPARDLGPRIFTAIAGWGGTPFSAHNNWWIYPVLGQLVGGALGGL
AYELTIAIHHEVDEEEASVAEAGADVERQPASGSNSKEGSPRPKE
Run BLAST on NCBI

transcript from alignment at sc0000069:286711..291639+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006586 ID=TCONS_00006586|Name=TCONS_00006586|organism=Clytia hemisphaerica|type=transcript|length=4929bp|location=Sequence derived from alignment at sc0000069:286711..291639+ (Clytia hemisphaerica)
TCTTCCTCCACGCTTCGTTGATTAAATGTATATTGTTTTGCACGCTCGAG
TAACCACGCCTCAGCTCAGCTTTTTCATTTCAACTTTTGCAAAAATACTG
TCTGGAACTACTGAATATTTTTTTcgtgataaaaattttcaggtatattt
tgtttatttttgtttgttttgttgtttgtttattCTAGTTTGAGGGATCA
ATTTTCATGTcaacttttaatttttgaattttttgaggtAGTTTTAGCTA
TCCAATTTCTGATGAGATCTCTCTTTCTGTTttgctaaaaaaaaattatt
ttgctaaTAGCATTTGTTCAAAGTCTGCAACTCGACTTTTTAATCTCCCA
AACTTCTCAAACTAATAAGTTATGTAGTAAAGGTTCACCAGGCGGGAAGG
AACAACTGTTAAAGTGGTGAGAGGCTAAAGGCTAAAAATGtgataaaatt
cgctaggaatttgagaaaaaatctcatttgctcaaaagtggggaggctga
agtctccccactTCCGCCCGGCCTGTTCACATAGTATCTCATTTACTCAA
TAAACATTCCCAGATATTTAAACAcctaatattttattttgatttttcag
ggGGTATGGACAAATTACGGGGTATGAAGACACCTCAGTTGTGTCGAGAA
GCCTTGGCTGAATTTATGGGAACACTCGTTCTTTGTGTAAGTATAATACA
TAATTTATCATAAACTTCCGAGTTCGAGCTCACTGGGTGTCAATGATGTT
AAAAGTCTGTATCTGTCAgttccatcaatatgccaaaaacattttgttca
accaccttcacttcaagataggccaccatagaatgaaccatattcatgtg
gctttcagccttgcactccatcacagagcctaattgagatattttactaa
ctagcccagagaaaattttaaacctttattatttgaattaaaaaatttta
acttggtcattagtcaaaaaagtcattaaaattgattagcctctgcgatg
gagtgcaaggctgaaagccacatgaatatggctcatcctataaaaggaag
ttcattctatggtggcctatcttgaagtgaaggtggttgaacaaaatgtt
tttggcatattgatggaacGGTCTTTAGTGAGGGAGTCACCCAGTTCAGA
CATTCGAATCATTCGATACTGGTAGAATGTTCTTTCTAATTCGGACCTTC
AATGGACTAAGAATTGTCTTCGAAaaggattcgaattacagaaagtttGT
TAGTgtcttattaatttttttgctaagGGAACCAATacttttagttcgaa
ttatagagagttgactgtaatcTAGTCTTGCCGTTACTTTTCATGAGCCT
TTTTTGGATTGTTGAGAATTCGGTCCTTCAGCATTTTAAACACGCAAGGA
AGTAATAAAGGTATAAGAAAAACTTGAAGCTTAAGCCTCATATGCCCatc
atatgaaaatatgtaacATTCCGAATACTTTCGACACGTTATCTAAGCTA
CATGTTATCGACGGTCGTATTAAAAAACGAAAGcatgattttcttttctt
tgcagACTTTCGGAGTAGGTAGTGTCGCACAATTTGTATTGGCTAAACAA
GACTTCGGAGGATATTGGTCCGTCAATTGGGGATGGGGTCTTGGCGTCGC
TTTTGGTATCTACTGGTCCGGTGGCATCTCAGGTAAGCGTCTGGGAGTTC
CTTTTATCGGACACGTTCATGTTTACTACGGAAGAGAAGCGTAGAAGAGG
TGCAAAATTCATGTAAGAGAGCGGATTTTTCTATGTTATTAAGAATATGC
CCTCCTATCAAactgtatttttgaaattttgagaacTAGAGAATGTCATT
ATATACGGAAAGCTTTTAATTTGGAGCCATATTGTCTTTGGTCAAATAAT
GATGGAGTTAATTACGCTAGAtttcttgtttttaaataagagtgatttta
caagctttttgatatggaattgacacgaatgtggagcaagataagtcaga
aaaaggaaattaaaacatttctttgcttatatcagcataaggaaagcaga
cactgtcctgatattaaatatgtgtctgatatgaaacaggaacacttatg
taaaaataaaacctttaacatcacTTTTCTGGAAATTGCATTTTTGTGGA
CTACTGGAAATAAGGTGTTagcaaatttgatttttttggtgtGAAGCCTT
AGCAGAAACGCCAAGAAAAGATAAATTTATTTTAGTTCTCATAGATTAAA
TTCACTGAGAATTTTAtcgttttcattttattcaggTGGGCACATCAACC
CAGCCGTTTCTTTCGCCCTTGCTGTTTGTGGGCGTTTCAAATGGCACAAA
GTTCCAGTATACTGGATTGCCCAAATGTTGGGCGCTATCATTGGTTCCGC
CCTTGCTTTTGGTGTTTACCATGGTATGAAGGTTTTTAATTAGCGAAGAT
TTTTAACAAAGCTATATATTTCTCTTGATACTATTACTTGGCCTTCAATC
tcaacaaaacacaaaagaaagtacacgctttttttataagaatggtgttt
ttttcaattcatcattggggaaaatcatcctgaaatattcttacagtatt
cttaggttaggatccaatCTAAGCCAAAATCCATGTGATACAATACCTCA
AGtgaaaatttggcatttttgtcgAACCTTTAAGCATTGCTGGGTAATAA
GTGGCAATTTAATcgtaaaatgctctaaaattggcattcttaggttcagt
taccaatttccatgatggtgatattcttaccatattcttaattttttggc
caataaACATTCTTATAAgtatattattataaaaaaagcgtgtaataagT
TTTAATCGAACCTCGGCAAACATCAATTCTTACTTCATTATTCTTTTAGA
TTATTTGGTTGAATTTTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACG
GAACAGCTGGAATCTGGTCCACCTACCCACCTGATCACGTCTCTAACTGG
ACTGGTTTCGCTGATCAAGTAAGCATCCGTTTAGCTTTTGAGAAtattga
aaatcattaaaagtCAGTCTTTTCATGCaccgaaaacaaatttttgttgg
AAGTAAATTAAAtaacttcttcatttttcttttgaccaatataAATAAGG
TGGAAGcattgctcgaaaaagtgcgatcgaagcgcgtgTAAgtagagacc
ggcctttaagTTTATTGACTAATCAATACAAATATAACTCTAACGCCGAT
GGGGAGTCAGTAATTTCTAAAGTTATCGAGAGTTCAACTTTTATTCAtga
tacccagctggcacacaacgttgttttaacgtttacctaacgttcacaac
gtccatataacgttagatgaacgttaaaacaacgttgtgtgccggctggg
tatGTATGTACAACTAAAATGTCTTCCAACATTATATCACGGCCCCAACA
GACATATTGACAGGTTTTACGTCATTTACAAccatcagctgttgggtcct
tgatgtaatgtcagaagacattgcagtggtgcacaTCATGAAAAAGTGTG
AAATATTCATGACTTTCTCAAGGAACAAGAAGAATTATTAGTTACGTAAT
AACTTTCATTACATTCacatttctttcctttcaaaGGTTTTGGGGACCGC
TTTATTCGTGGGAACCATTTTCGCCCTTTTGGATTCGAAAAACATTGGTG
TTGGTAGCAACATTGCGCCATTTTTAATTGGTTTGATCGTCCTCACCATG
GGAACAACTTTTGGTATCAACGCTGGATTTGGATTGAACCCTGCAAGAGA
TTTGGGACCAAGAATCTTTACCGCTATTGCTGGATGGGGTGGAACGCCTT
TCTCGTAAGTATTCATACAATTTATAAAGAGCAGTATCTCTTACTTTGGT
TGACCTGAGTCAGGGTCATATAAAATGACTATTGGCCTTAAATTCTTCTG
CACATTTTGACTTGTCTCTTTATTAAACTTTTTGCACAAAACAAGAAATT
ATTGAAGTGTTCCGTATCTTTAGCTAAACAAGAATCTGTTTTAGGTATAC
TGCTGTAAGGAAATTGAATAAAATGCAATCgaattttctaaatattttta
ctAAATTCCTTCATATCACAGAGCTCACAATAACTGGTGGATCTACCCTG
TTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTTTGGCTTACGAATTG
ACAATCGCTATTCACCATGAAGTCGATGAAGAGGAAGCTTCTGTGGCGGA
AGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGGTTCAAACTCAAAAG
AAGGTTCACCACGCCCTAAAGagtaaatttgaaatgaaaatgatgcgaaa
tttgttatttgaaatatttttttctgacacTCAAGTTCTATGTTTGAGTT
TgtgtcaaaaaaattacaatcgaATCCTTttgtaaaaagaaatttcaagt
aTCTCTTTTCGTTGATTTGGAAGTGGCTCGGTGTGAAGTCCGCCAGGTTT
GATTGATTGGCTCATTGATCGATTGATCTCGATTATGGTCTCGATTAGTT
TCGATTGGTTTACAAAATCTGCTTTTTCATTACGCTGTATTCcaatattt
tgttgatttttttccaacctcaTCCCCGTGTATCCTAGGCTTTATTTATG
TTACTGAAAGccgccagagaatattatctgcCGCTATCAGTAACCATAAA
GAGCCGATAACGCACAGAGAGCGAGGTTggattttttcaatcttttctcT
TTTCATATTGAATATTTAACATACTAAAAACCCGTTTCATTTGAAATGTA
TTTATTTCGAGAGGGAATTTTTCTATCAtctatatcataaataaatttaa
aGGAAATTGCACCAcaagttttaattttgaaaggATCAAGGGTTGTACGA
TGGGGTGGGTGAAGGTGGTAAGATGGGGC

Coding sequence (CDS) from alignment at sc0000069:286711..291639+

>TCONS_00006586 ID=TCONS_00006586|Name=TCONS_00006586|organism=Clytia hemisphaerica|type=CDS|length=5328bp|location=Sequence derived from alignment at sc0000069:286711..291639+ (Clytia hemisphaerica)
ATGGACAAATTACGGGGTATGAAGACACCTCAGTTGTGTCGAGAAGCCTT
GGCTGAATTTATGGGAACACTCGTTCTTTGTACTTTCGGAGTAGGTAGTG
TCGCACAATTTGTATTGGCTAAACAAGACTTCGGAGGATATTGGTCCGTC
AATTGGGGATGGGGTCTTGGCGTCGCTTTTGGTATCTACTGGTCCGGTGG
CATCTCAGgTGGGCACATCAACCCAGCCGTTTCTTTCGCCCTTGCTGTTT
GTGGGCGTTTCAAATGGCACAAAGTTCCAGTATACTGGATTGCCCAAATG
TTGGGCGCTATCATTGGTTCCGCCCTTGCTTTTGGTGTTTACCATGATTA
TTTGGTTGAATTTTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACGGAA
CAGCTGGAATCTGGTCCACCTACCCACCTGATCACGTCTCTAACTGGACT
GGTTTCGCTGATCAAGTTTTGGGGACCGCTTTATTCGTGGGAACCATTTT
CGCCCTTTTGGATTCGAAAAACATTGGTGTTGGTAGCAACATTGCGCCAT
TTTTAATTGGTTTGATCGTCCTCACCATGGGAACAACTTTTGGTATCAAC
GCTGGATTTGGATTGAACCCTGCAAGAGATTTGGGACCAAGAATCTTTAC
CGCTATTGCTGGATGGGGTGGAACGCCTTTCTCAGCTCACAATAACTGGT
GGATCTACCCTGTTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTTTG
GCTTACGAATTGACAATCGCTATTCACCATGAAGTCGATGAAGAGGAAGC
TTCTGTGGCGGAAGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGGTT
CAAACTCAAAAGAAGGTTCACCACGCCCTAAAGagtaaATGGACAAATTA
CGGGGTATGAAGACACCTCAGTTGTGTCGAGAAGCCTTGGCTGAATTTAT
GGGAACACTCGTTCTTTGTACTTTCGGAGTAGGTAGTGTCGCACAATTTG
TATTGGCTAAACAAGACTTCGGAGGATATTGGTCCGTCAATTGGGGATGG
GGTCTTGGCGTCGCTTTTGGTATCTACTGGTCCGGTGGCATCTCAGgTGG
GCACATCAACCCAGCCGTTTCTTTCGCCCTTGCTGTTTGTGGGCGTTTCA
AATGGCACAAAGTTCCAGTATACTGGATTGCCCAAATGTTGGGCGCTATC
ATTGGTTCCGCCCTTGCTTTTGGTGTTTACCATGATTATTTGGTTGAATT
TTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACGGAACAGCTGGAATCT
GGTCCACCTACCCACCTGATCACGTCTCTAACTGGACTGGTTTCGCTGAT
CAAGTTTTGGGGACCGCTTTATTCGTGGGAACCATTTTCGCCCTTTTGGA
TTCGAAAAACATTGGTGTTGGTAGCAACATTGCGCCATTTTTAATTGGTT
TGATCGTCCTCACCATGGGAACAACTTTTGGTATCAACGCTGGATTTGGA
TTGAACCCTGCAAGAGATTTGGGACCAAGAATCTTTACCGCTATTGCTGG
ATGGGGTGGAACGCCTTTCTCAGCTCACAATAACTGGTGGATCTACCCTG
TTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTTTGGCTTACGAATTG
ACAATCGCTATTCACCATGAAGTCGATGAAGAGGAAGCTTCTGTGGCGGA
AGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGGTTCAAACTCAAAAG
AAGGTTCACCACGCCCTAAAGagtaaATGGACAAATTACGGGGTATGAAG
ACACCTCAGTTGTGTCGAGAAGCCTTGGCTGAATTTATGGGAACACTCGT
TCTTTGTACTTTCGGAGTAGGTAGTGTCGCACAATTTGTATTGGCTAAAC
AAGACTTCGGAGGATATTGGTCCGTCAATTGGGGATGGGGTCTTGGCGTC
GCTTTTGGTATCTACTGGTCCGGTGGCATCTCAGgTGGGCACATCAACCC
AGCCGTTTCTTTCGCCCTTGCTGTTTGTGGGCGTTTCAAATGGCACAAAG
TTCCAGTATACTGGATTGCCCAAATGTTGGGCGCTATCATTGGTTCCGCC
CTTGCTTTTGGTGTTTACCATGATTATTTGGTTGAATTTTCTGGTTCGGA
ACGTTTGACTTCTGGAGCTAACGGAACAGCTGGAATCTGGTCCACCTACC
CACCTGATCACGTCTCTAACTGGACTGGTTTCGCTGATCAAGTTTTGGGG
ACCGCTTTATTCGTGGGAACCATTTTCGCCCTTTTGGATTCGAAAAACAT
TGGTGTTGGTAGCAACATTGCGCCATTTTTAATTGGTTTGATCGTCCTCA
CCATGGGAACAACTTTTGGTATCAACGCTGGATTTGGATTGAACCCTGCA
AGAGATTTGGGACCAAGAATCTTTACCGCTATTGCTGGATGGGGTGGAAC
GCCTTTCTCAGCTCACAATAACTGGTGGATCTACCCTGTTCTCGGTCAAC
TTGTGGGCGGTGCTTTGGGTGGTTTGGCTTACGAATTGACAATCGCTATT
CACCATGAAGTCGATGAAGAGGAAGCTTCTGTGGCGGAAGCGGGCGCTGA
TGTTGAACGCCAACCCGCCAGTGGTTCAAACTCAAAAGAAGGTTCACCAC
GCCCTAAAGagtaaATGGACAAATTACGGGGTATGAAGACACCTCAGTTG
TGTCGAGAAGCCTTGGCTGAATTTATGGGAACACTCGTTCTTTGTACTTT
CGGAGTAGGTAGTGTCGCACAATTTGTATTGGCTAAACAAGACTTCGGAG
GATATTGGTCCGTCAATTGGGGATGGGGTCTTGGCGTCGCTTTTGGTATC
TACTGGTCCGGTGGCATCTCAGgTGGGCACATCAACCCAGCCGTTTCTTT
CGCCCTTGCTGTTTGTGGGCGTTTCAAATGGCACAAAGTTCCAGTATACT
GGATTGCCCAAATGTTGGGCGCTATCATTGGTTCCGCCCTTGCTTTTGGT
GTTTACCATGATTATTTGGTTGAATTTTCTGGTTCGGAACGTTTGACTTC
TGGAGCTAACGGAACAGCTGGAATCTGGTCCACCTACCCACCTGATCACG
TCTCTAACTGGACTGGTTTCGCTGATCAAGTTTTGGGGACCGCTTTATTC
GTGGGAACCATTTTCGCCCTTTTGGATTCGAAAAACATTGGTGTTGGTAG
CAACATTGCGCCATTTTTAATTGGTTTGATCGTCCTCACCATGGGAACAA
CTTTTGGTATCAACGCTGGATTTGGATTGAACCCTGCAAGAGATTTGGGA
CCAAGAATCTTTACCGCTATTGCTGGATGGGGTGGAACGCCTTTCTCAGC
TCACAATAACTGGTGGATCTACCCTGTTCTCGGTCAACTTGTGGGCGGTG
CTTTGGGTGGTTTGGCTTACGAATTGACAATCGCTATTCACCATGAAGTC
GATGAAGAGGAAGCTTCTGTGGCGGAAGCGGGCGCTGATGTTGAACGCCA
ACCCGCCAGTGGTTCAAACTCAAAAGAAGGTTCACCACGCCCTAAAGagt
aaATGGACAAATTACGGGGTATGAAGACACCTCAGTTGTGTCGAGAAGCC
TTGGCTGAATTTATGGGAACACTCGTTCTTTGTACTTTCGGAGTAGGTAG
TGTCGCACAATTTGTATTGGCTAAACAAGACTTCGGAGGATATTGGTCCG
TCAATTGGGGATGGGGTCTTGGCGTCGCTTTTGGTATCTACTGGTCCGGT
GGCATCTCAGgTGGGCACATCAACCCAGCCGTTTCTTTCGCCCTTGCTGT
TTGTGGGCGTTTCAAATGGCACAAAGTTCCAGTATACTGGATTGCCCAAA
TGTTGGGCGCTATCATTGGTTCCGCCCTTGCTTTTGGTGTTTACCATGAT
TATTTGGTTGAATTTTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACGG
AACAGCTGGAATCTGGTCCACCTACCCACCTGATCACGTCTCTAACTGGA
CTGGTTTCGCTGATCAAGTTTTGGGGACCGCTTTATTCGTGGGAACCATT
TTCGCCCTTTTGGATTCGAAAAACATTGGTGTTGGTAGCAACATTGCGCC
ATTTTTAATTGGTTTGATCGTCCTCACCATGGGAACAACTTTTGGTATCA
ACGCTGGATTTGGATTGAACCCTGCAAGAGATTTGGGACCAAGAATCTTT
ACCGCTATTGCTGGATGGGGTGGAACGCCTTTCTCAGCTCACAATAACTG
GTGGATCTACCCTGTTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTT
TGGCTTACGAATTGACAATCGCTATTCACCATGAAGTCGATGAAGAGGAA
GCTTCTGTGGCGGAAGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGG
TTCAAACTCAAAAGAAGGTTCACCACGCCCTAAAGagtaaATGGACAAAT
TACGGGGTATGAAGACACCTCAGTTGTGTCGAGAAGCCTTGGCTGAATTT
ATGGGAACACTCGTTCTTTGTACTTTCGGAGTAGGTAGTGTCGCACAATT
TGTATTGGCTAAACAAGACTTCGGAGGATATTGGTCCGTCAATTGGGGAT
GGGGTCTTGGCGTCGCTTTTGGTATCTACTGGTCCGGTGGCATCTCAGgT
GGGCACATCAACCCAGCCGTTTCTTTCGCCCTTGCTGTTTGTGGGCGTTT
CAAATGGCACAAAGTTCCAGTATACTGGATTGCCCAAATGTTGGGCGCTA
TCATTGGTTCCGCCCTTGCTTTTGGTGTTTACCATGATTATTTGGTTGAA
TTTTCTGGTTCGGAACGTTTGACTTCTGGAGCTAACGGAACAGCTGGAAT
CTGGTCCACCTACCCACCTGATCACGTCTCTAACTGGACTGGTTTCGCTG
ATCAAGTTTTGGGGACCGCTTTATTCGTGGGAACCATTTTCGCCCTTTTG
GATTCGAAAAACATTGGTGTTGGTAGCAACATTGCGCCATTTTTAATTGG
TTTGATCGTCCTCACCATGGGAACAACTTTTGGTATCAACGCTGGATTTG
GATTGAACCCTGCAAGAGATTTGGGACCAAGAATCTTTACCGCTATTGCT
GGATGGGGTGGAACGCCTTTCTCAGCTCACAATAACTGGTGGATCTACCC
TGTTCTCGGTCAACTTGTGGGCGGTGCTTTGGGTGGTTTGGCTTACGAAT
TGACAATCGCTATTCACCATGAAGTCGATGAAGAGGAAGCTTCTGTGGCG
GAAGCGGGCGCTGATGTTGAACGCCAACCCGCCAGTGGTTCAAACTCAAA
AGAAGGTTCACCACGCCCTAAAGagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003724XLOC_003724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006586-proteinTCONS_00006586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006586-exon-sc0000069-1491911889:286711..286852TCONS_00006586-exon-sc0000069-1491911889:286711..286852Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:286711..286852TCONS_00006586-exon-sc0000069-1510915933:286711..286852Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:286711..286852TCONS_00006586-exon-sc0000069-1575043694:286711..286852Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:287311..287396TCONS_00006586-exon-sc0000069-1491911889:287311..287396Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:287311..287396TCONS_00006586-exon-sc0000069-1510915933:287311..287396Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:287311..287396TCONS_00006586-exon-sc0000069-1575043694:287311..287396Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:288266..288392TCONS_00006586-exon-sc0000069-1491911889:288266..288392Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:288266..288392TCONS_00006586-exon-sc0000069-1510915933:288266..288392Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:288266..288392TCONS_00006586-exon-sc0000069-1575043694:288266..288392Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:288996..289133TCONS_00006586-exon-sc0000069-1491911889:288996..289133Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:288996..289133TCONS_00006586-exon-sc0000069-1510915933:288996..289133Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:288996..289133TCONS_00006586-exon-sc0000069-1575043694:288996..289133Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:289610..289728TCONS_00006586-exon-sc0000069-1491911889:289610..289728Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:289610..289728TCONS_00006586-exon-sc0000069-1510915933:289610..289728Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:289610..289728TCONS_00006586-exon-sc0000069-1575043694:289610..289728Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:290347..290564TCONS_00006586-exon-sc0000069-1491911889:290347..290564Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:290347..290564TCONS_00006586-exon-sc0000069-1510915933:290347..290564Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:290347..290564TCONS_00006586-exon-sc0000069-1575043694:290347..290564Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:290832..291311TCONS_00006586-exon-sc0000069-1491911889:290832..291311Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:290832..291311TCONS_00006586-exon-sc0000069-1510915933:290832..291311Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:290832..291311TCONS_00006586-exon-sc0000069-1575043694:290832..291311Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1491911889:291436..291639TCONS_00006586-exon-sc0000069-1491911889:291436..291639Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1510915933:291436..291639TCONS_00006586-exon-sc0000069-1510915933:291436..291639Clytia hemisphaericaexon
TCONS_00006586-exon-sc0000069-1575043694:291436..291639TCONS_00006586-exon-sc0000069-1575043694:291436..291639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:286711..291639 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362969	0.360452	0.365874	0.271033	1.72911	0.574698	12.7408	13.5572	12.5048	10.6766	24.1805	23.082	76.4831	74.2172	62.9327	151.898	71.6735	74.6434	0	0	43.4144	52.4543	33.8574	37.9423	36.4809	31.2269	4.21572	0.370079	0	3.89006e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000425MIP
IPR023271Aquaporin-like
IPR022357MIP_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00006586 vs. Swiss-Prot (Human)
Match: AQP9 (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.696e-72
Identity = 123/258 (47.67%), Postives = 173/258 (67.05%), Query Frame = 1 
Query:  154 KLRGMKTPQLCREALAEFMGTLVLCTFGVGSVAQFVLAKQDFGGYWSVNWGWGLGVAFGIYWSGGISGGHINPAVSFALAVCGRFKWHKVPVYWIAQMLGAIIGSALAFGVYHDYLVEFSGSERLTSGANGTAGIWSTYPPDHVSNWTGFADQVLGTALFVGTIFALLDSKNIGVGSNIAPFLIGLIVLTMGTTFGINAGFGLNPARDLGPRIFTAIAGWGGTPFSAHNNWWIYPXXXXXXXXXXXXXXYELTIAIHH 927
            K R +    L +E L+EF+GT +L   G G VAQ +L++  FGG  ++N G+ + VA  IY +GG+SGGHINPAVS A+ + GR KW K+P Y  AQ LGA +G+A  FG+Y+D L+ F+G + L  G N TA I++TYP  ++S    FADQV+ T + +  +FA+ DS+N+G    + P  IGL+++ + ++ G+N+G  +NPARDL PR+FTA+AGWG   F A NN+W  PV+G LVG  +GGL Y L I IHH
Sbjct:   13 KQRLVLKSSLAKETLSEFLGTFILIVLGCGCVAQAILSRGRFGGVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFWWIPVVGPLVGAVIGGLIYVLVIEIHH 270
The following BLAST results are available for this feature:
BLAST of TCONS_00006586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AQP93.696e-7247.67Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=2 SV=2[more]
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