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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066459 ID=TCONS_00066459|Name=TCONS_00066459|organism=Clytia hemisphaerica|type=transcript|length=2361bp
GAGCAAAGAGTTCAGAGGGCAATCAAAGTAATCAAATTTCAGCTCAATAC
AGGAAGAAGCGAGAATGGCACCGTGTAATCCATGGAAAATATTTGGCTAT
GTGTCATTACTTTATTACTTCTATTCAATAATTGGAATCCTGATGTCGTT
CATATTGGTGAGCAGTCTTGTCTATTTCACTGATGGTTTGAAAGAtctaa
ctttcgcgaatcgaaTTATGNAGCCTTGTCTATTTCACTGATGGTTTGAA
AGATTTAACTTTCGCGAAACGAATAATCATCAGAGATTGTTATTGGGCTT
TTATTTTTGCAACCAAGTTTATTCCAGCTATCAAGAGAAACAGAGATAAA
ACTCCAAATCAACTTTTACGAGAAACAACCGAAAAATATCCGAACAGAAA
AGCCCTTGTTGACGCAGAAACAGGGCAATCTTTAACTTTCaacgaaattc
aaatttttatcaaCAAACTTGGCCATGTCATTAAAAGCTTCGGTTACAAC
CCTGGAGATAAAATTGCACTTTTCCTTCGAAATGAATTGGAGTATGTTCC
CATATGGTTAGGATTGAACAAAATTGGTATCCAAGTCGGTTTAATCAACT
TTAATTTGCAGGGAAAAAGTTTGGAACATTGTTTAACTGTTGTTGACTTT
AAAGGTATTATTTGCAGTCCAAATCTGGTGAAGGTTTTAAAGAACACTGA
TTTCCACGAAAAATCTGGTgtcaagattttcatttttggtgaTGAATCGT
TTGAAGGAGATTACAAGGATCTGAAAAGACTGATCAATGACCAAAAGGAT
TCTAGCCCTGTAGGAGATGATATTAAAGGACCAAAAGGCACACCTCTATT
GATGTATACCTCTGGAAGTACTGGCAAACCGAAAGCAGCTCGAGTTACAA
ATGAAAAGATTTTGGGTCCTTTTATCAGTAACGAAGTGCTTACTAACACA
CCTGAGGATGTGGTGTATTGCGCCCTACCGTTCTATCATGGAGCGGGCGG
TGTGGGTGGTATGTCGCCCATGATTTATAACGGATGTACGACGATCATTC
GAAAGAAGTTCAGTGCTTCGAATTTCATTTCTGATTGTGTGAAACATGAT
GTGACGTGGGTAGTCTATATCGGTGAATTATGGAAATACTTGTTGTCACA
GCCACCCAGAGATACCGATCGTCGACATAAGATTCGAATTGCAGTTGGGA
ACGGCTTGAGAAAGAATATGGTCGGACCAGTTAAAAAGAGGTTTGGTGTC
CAACGAATTGTGGAGCTTTATGGTGCTACTGACGGTAATGCAGTGATGAT
TAATCTCGATAACGTTCCCGGAGCTGTTGGATTTTACTATTTCTTGTTCC
CATTTTTGAATCAGAATTGTTTGGTGAAAGTGGATGTTGAAACTGGCGAG
ATTATCAGAGATGAGAATGGTCGAGCTATCCTTTGCAAACCTGGCGAAGT
TGGTTTGATTGTTGGATTGATTCGACAGGATAGAGGATTTGAAGGATATG
TCAATAATGCTAAGGAtactgagaaaaaaatcatcaggAATCTGTTCAAC
GATGGTGACTCTGCTGTCAATTCTGGTGATCTTTTGGTTATGGATGAATA
TCGCAATGTGTTTTTCGTTGACCGGATTGGCGATACCTTTCGTTGGAGAG
GTGAGAATGTTGCCACAACTGAAGTTGAAAATATCATGTCATCTGTAATC
AGCACTGCTGAAGATGTGGTCGTTTATCCAGTACCTATACCAGGAGAAGG
AGGGAATGCTGGCATGGCTTACATTCGAGAAAAAGAAAACCAACAGTTTT
CAATTAAAGGTGTTGCTCAAAGTCTGTTGGAAGAATTACCAAAATATGCC
ATTCCAATGTTCATTCGCATTGGTCGAAATCTTGATCAAACTGGTActtt
caaatatcaaaagaNCCAATGTTCATTCGCATTGGTCGAAATCTTGATCA
AACTGGTACCTTCAAATATCAAAAGAGCgctttgaagaaagaaaaatatg
atttgAAGAGCTGCAATAAAGATGATGTCATTTATGTCTATGACGTCACC
aagaaagattacgtaattctcGATGCAGAATTGCAAGTTAAAATTGAAAA
CGGACAAATGAGattctgaaaaataaagacAATCATCTTTATAGTTATAG
CTCTTCCCTTTTTGTTGTATAACATCTTGGGAAATATCttcttatttttt
aagttaattttttgttagtaATGATTGACGTGAtctaacaaaaatgaaga
ttaaaaaatttgaaaatcaaattctttTCCATATGGCTGAAGCCTCTGCT
GAAGATTGGGTACTAGGTTTGCCGGATGACGCGAATGTGCTAATTCGGAA
ATGATTGGGTC Run BLAST on NCBI protein sequence of TCONS_00066459-protein >TCONS_00066459-protein ID=TCONS_00066459-protein|Name=TCONS_00066459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MYTSGSTGKPKAARVTNEKILGPFISNEVLTNTPEDVVYCALPFYHGAGG
VGGMSPMIYNGCTTIIRKKFSASNFISDCVKHDVTWVVYIGELWKYLLSQ
PPRDTDRRHKIRIAVGNGLRKNMVGPVKKRFGVQRIVELYGATDGNAVMI
NLDNVPGAVGFYYFLFPFLNQNCLVKVDVETGEIIRDENGRAILCKPGEV
GLIVGLIRQDRGFEGYVNNAKDTEKKIIRNLFNDGDSAVNSGDLLVMDEY
RNVFFVDRIGDTFRWRGENVATTEVENIMSSVISTAEDVVVYPVPIPGEG
GNAGMAYIREKENQQFSIKGVAQSLLEELPKYAIPMFIRIGRNLDQTGTF
KYQKXQCSFALVEILIKLVPSNIKRAL Run BLAST on NCBI transcript from alignment at scaffold_455:418176..421542- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066459 ID=TCONS_00066459|Name=TCONS_00066459|organism=Clytia hemisphaerica|type=transcript|length=3367bp|location=Sequence derived from alignment at scaffold_455:418176..421542- (Clytia hemisphaerica)
GAGCAAAGAGTTCAGAGGGCAATCAAAGTAATCAAATTTCAGGTAAATCT
CCAAAACTGTGTATAAACATAACAAATAAATTGTGTGTTACAAATTTATG
TGCTTTAAATCTCAAATTTGAGTGAGTATTGTTTGTTAGTCTGTGTGATG
AAAGAACTTTCTTGCGAAGTTTTGAATAAGACTCGGTAGTCTCAAAATTT
TAGAAAATATAAGATTATTTTAAGTCGCATAAAGTCAAAACTTTCAGAGA
CTAGTGTAGTTAGATCAAGGAAAAACCTAAGATCGACTAATTCTTAGATC
TGCGCGCTAACTGAAGTGCACATACGTTCAATCCTGAATTTTGGATGCGG
GCAATCTAAATAAATCGTAAAAAAATATTTTCAACCTGAGTATCCAGGTT
AAACTCCTTCAAAGCATTGAGTTTAAAGCCCGAAGGGCTAGAGTAGAATC
TTTAACCTATCCCAGGCAAGAAAAAGTGAAGCCACTTATTTCCCATCTAG
AACGCGCCTAGAACGCGACGTAACCATGACAAAAAATTTTATCTCTAGCG
GTTTCTTTGTTTTTGAGGACTGCCTGCCTTTTTTTAAATCTAACGACAGA
TTTTACTTTCAATCCGGCGTTTGTATAAACCGCGCGCGGGCGTTCTGGGT
GGGATACACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGC
TTCGAGCCCAAAAATTTAAGAACATTCTAACAACATACTAAGGCTTTGTA
GACTTAAAAACATGCAATTTCTTAAGAAATTACATCAAAATGCTCAAAAA
ATGCTGAAAATAAGAACATTTTAAAAACATTTTTAGGCTTCAAATCCAAA
AAACTAAGAACATCCGAAGGCTTCGAAAATTTTTGATGTTCTTATAAAAA
AAAAACGTGTAGGAGTCTCGAGTCTAGCCCTTCGGGCTTGGAGGTCAATG
CTTCAAAGTGGAGAGGAAAAACGAACCGAAGTGGAAAAATAATTTGATCT
TGAAAATTATCAAATCCCAAAAACATACAATTTTTGTTCCTTTTTCAGCT
CAATACAGGAAGAAGCGAGAATGGCACCGTGTAATCCATGGAAAATATTT
GGCTATGTGTCATTACTTTATTACTTCTATTCAATAATTGGAATCCTGAT
GTCGTTCATATTGGTGAGCAGTCTTGTCTATTTCACTGATGGTTTGAAAG
ATCTAACTTTCGCGAATCGAATTATGNAGCCTTGTCTATTTCACTGATGG
TTTGAAAGATTTAACTTTCGCGAAACGAATAATCATCAGAGATTGTTATT
GGGCTTTTATTTTTGCAACCAAGTTTATTCCAGCTATCAAGAGAAACAGA
GATAAAACTCCAAATCAACTTTTACGAGAAACAACCGAAAAATATCCGAA
CAGAAAAGCCCTTGTTGACGCAGAAACAGGGCAATCTTTAACTTTCAACG
AAATTCAAATTTTTATCAACAAACTTGGCCATGTCATTAAAAGCTTCGGT
TACAACCCTGGAGATAAAATTGCACTTTTCCTTCGAAATGAATTGGAGTA
TGTTCCCATATGGTTAGGATTGAACAAAATTGGTATCCAAGTCGGTTTAA
TCAACTTTAATTTGCAGGGAAAAAGTTTGGAACATTGTTTAACTGTTGTT
GACTTTAAAGGTATTATTTGCAGTCCAAATCTGGTGAAGGTTTTAAAGAA
CACTGATTTCCACGAAAAATCTGGTGTCAAGATTTTCATTTTTGGTGATG
AATCGTTTGAAGGAGATTACAAGGATCTGAAAAGACTGATCAATGACCAA
AAGGATTCTAGCCCTGTAGGAGATGATATTAAAGGACCAAAAGGCACACC
TCTATTGATGTATACCTCTGGAAGTACTGGCAAACCGAAAGCAGCTCGAG
TTACAAATGAAAAGATTTTGGGTCCTTTTATCAGTAACGAAGTGCTTACT
AACACACCTGAGGATGTGGTGTATTGCGCCCTACCGTTCTATCATGGAGC
GGGCGGTGTGGGTGGTATGTCGCCCATGATTTATAACGGATGTACGACGA
TCATTCGAAAGAAGTTCAGTGCTTCGAATTTCATTTCTGATTGTGTGAAA
CATGATGTGACGTGGGTAGTCTATATCGGTGAATTATGGAAATACTTGTT
GTCACAGCCACCCAGAGATACCGATCGTCGACATAAGATTCGAATTGCAG
TTGGGAACGGCTTGAGAAAGAATATGGTCGGACCAGTTAAAAAGAGGTTT
GGTGTCCAACGAATTGTGGAGCTTTATGGTGCTACTGACGGTAATGCAGT
GATGATTAATCTCGATAACGTTCCCGGAGCTGTTGGATTTTACTATTTCT
TGTTCCCATTTTTGAATCAGAATTGTTTGGTGAAAGTGGATGTTGAAACT
GGCGAGATTATCAGAGATGAGAATGGTCGAGCTATCCTTTGCAAACCTGG
CGAAGTTGGTTTGATTGTTGGATTGATTCGACAGGATAGAGGATTTGAAG
GATATGTCAATAATGCTAAGGATACTGAGAAAAAAATCATCAGGAATCTG
TTCAACGATGGTGACTCTGCTGTCAATTCTGGTGATCTTTTGGTTATGGA
TGAATATCGCAATGTGTTTTTCGTTGACCGGATTGGCGATACCTTTCGTT
GGAGAGGTGAGAATGTTGCCACAACTGAAGTTGAAAATATCATGTCATCT
GTAATCAGCACTGCTGAAGATGTGGTCGTTTATCCAGTACCTATACCAGG
AGAAGGAGGGAATGCTGGCATGGCTTACATTCGAGAAAAAGAAAACCAAC
AGTTTTCAATTAAAGGTGTTGCTCAAAGTCTGTTGGAAGAATTACCAAAA
TATGCCATTCCAATGTTCATTCGCATTGGTCGAAATCTTGATCAAACTGG
TACTTTCAAATATCAAAAGANCCAATGTTCATTCGCATTGGTCGAAATCT
TGATCAAACTGGTACCTTCAAATATCAAAAGAGCGCTTTGAAGAAAGAAA
AATATGATTTGAAGAGCTGCAATAAAGATGATGTCATTTATGTCTATGAC
GTCACCAAGAAAGATTACGTAATTCTCGATGCAGAATTGCAAGTTAAAAT
TGAAAACGGACAAATGAGATTCTGAAAAATAAAGACAATCATCTTTATAG
TTATAGCTCTTCCCTTTTTGTTGTATAACATCTTGGGAAATATCTTCTTA
TTTTTTAAGTTAATTTTTTGTTAGTAATGATTGACGTGATCTAACAAAAA
TGAAGATTAAAAAATTTGAAAATCAAATTCTTTTCCATATGGCTGAAGCC
TCTGCTGAAGATTGGGTACTAGGTTTGCCGGATGACGCGAATGTGCTAAT
TCGGAAATGATTGGGTC Coding sequence (CDS) from alignment at scaffold_455:418176..421542- >TCONS_00066459 ID=TCONS_00066459|Name=TCONS_00066459|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_455:418176..421542- (Clytia hemisphaerica)
ATGTATACCTCTGGAAGTACTGGCAAACCGAAAGCAGCTCGAGTTACAAA
TGAAAAGATTTTGGGTCCTTTTATCAGTAACGAAGTGCTTACTAACACAC
CTGAGGATGTGGTGTATTGCGCCCTACCGTTCTATCATGGAGCGGGCGGT
GTGGGTGGTATGTCGCCCATGATTTATAACGGATGTACGACGATCATTCG
AAAGAAGTTCAGTGCTTCGAATTTCATTTCTGATTGTGTGAAACATGATG
TGACGTGGGTAGTCTATATCGGTGAATTATGGAAATACTTGTTGTCACAG
CCACCCAGAGATACCGATCGTCGACATAAGATTCGAATTGCAGTTGGGAA
CGGCTTGAGAAAGAATATGGTCGGACCAGTTAAAAAGAGGTTTGGTGTCC
AACGAATTGTGGAGCTTTATGGTGCTACTGACGGTAATGCAGTGATGATT
AATCTCGATAACGTTCCCGGAGCTGTTGGATTTTACTATTTCTTGTTCCC
ATTTTTGAATCAGAATTGTTTGGTGAAAGTGGATGTTGAAACTGGCGAGA
TTATCAGAGATGAGAATGGTCGAGCTATCCTTTGCAAACCTGGCGAAGTT
GGTTTGATTGTTGGATTGATTCGACAGGATAGAGGATTTGAAGGATATGT
CAATAATGCTAAGGATACTGAGAAAAAAATCATCAGGAATCTGTTCAACG
ATGGTGACTCTGCTGTCAATTCTGGTGATCTTTTGGTTATGGATGAATAT
CGCAATGTGTTTTTCGTTGACCGGATTGGCGATACCTTTCGTTGGAGAGG
TGAGAATGTTGCCACAACTGAAGTTGAAAATATCATGTCATCTGTAATCA
GCACTGCTGAAGATGTGGTCGTTTATCCAGTACCTATACCAGGAGAAGGA
GGGAATGCTGGCATGGCTTACATTCGAGAAAAAGAAAACCAACAGTTTTC
AATTAAAGGTGTTGCTCAAAGTCTGTTGGAAGAATTACCAAAATATGCCA
TTCCAATGTTCATTCGCATTGGTCGAAATCTTGATCAAACTGGTACTTTC
AAATATCAAAAGANCCAATGTTCATTCGCATTGGTCGAAATCTTGATCAA
ACTGGTACCTTCAAATATCAAAAGAGCGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066459-exon-scaffold_455-1575043694:421501..421542 | TCONS_00066459-exon-scaffold_455-1575043694:421501..421542 | Clytia hemisphaerica | exon |
| TCONS_00066459-exon-scaffold_455-1575043694:418176..420494 | TCONS_00066459-exon-scaffold_455-1575043694:418176..420494 | Clytia hemisphaerica | exon |
| TCONS_00066459-exon-scaffold_455-1510915933:421501..421542 | TCONS_00066459-exon-scaffold_455-1510915933:421501..421542 | Clytia hemisphaerica | exon |
| TCONS_00066459-exon-scaffold_455-1510915933:418176..420494 | TCONS_00066459-exon-scaffold_455-1510915933:418176..420494 | Clytia hemisphaerica | exon |
| TCONS_00066459-exon-scaffold_455-1491911889:421501..421542 | TCONS_00066459-exon-scaffold_455-1491911889:421501..421542 | Clytia hemisphaerica | exon |
| TCONS_00066459-exon-scaffold_455-1491911889:418176..420494 | TCONS_00066459-exon-scaffold_455-1491911889:418176..420494 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_455 | supercontig | scaffold_455:418176..421542 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000873 | AMP-dep_Synth/Lig |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00066459 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 3.710e-119 Identity = 213/532 (40.04%), Postives = 308/532 (57.89%), Query Frame = 3
Query: 348 KTPNQLLRETTEKYPNRKALVDAETGQSLTFNEIQIFINKLGHVIKSFGYNPGDKIALFLRNELEYVPIWLGLNKIGIQVGLINFNLQGKSLEHCLTVVDFKGIICSPNLVKVLKNTDFHEKSGVKIFIFGDESFEGDYKDLKRL--INDQKDSSPVGD-DIKGPKGTPLLMYTSGSTGKPKAARVTNEKI--LGPFISNEVLTNTPEDVVYCALPFYHGAGGVGGMSPMIYNGCTTIIRKKFSASNFISDCVKHDVTWVVYIGELWKYLLSQPPRDTDRRHKIRIAVGNGLRKNMVGPVKKRFGVQRIVELYGATDGNAVMINLDNVPGAVGFYYFLFPFLNQNCLVKVDVETGEIIRDENGRAILCKPGEVGLIVGLIRQD---RGFEGYVNNAKDTEKKIIRNLFNDGDSAVNSGDLLVMDEYRNVFFVDRIGDTFRWRGENVATTEVENIMSSVISTAEDVVVYPVPIPGEGGNAGMAYIREKENQQFSIKGVAQSLLEELPKYAIPMFIRIGRNLDQTGTFKYQKXQ 1919
T ++ + ++ P R ALVDA TG+ TF ++ + N + ++ + G+ PGD +A+FL E+V +WLGL K G++ L+N NL+ + L CL K +I +V + H + F GD EG D L + + ++P+ KG +YTSG+TG PKAA V + + + F + DV+Y LP YH AG + G+ + G T ++RKKFSAS F DC+K++ T V YIGE+ +YLL QP R+ +RRH++R+AVGNGLR + +RFGV++I E YGAT+ N + N+D G+ GF + P + LVKV+ +T E++RD G I C+ GE GL+VG I Q R F+GYV+ + T KKI ++F+ GDSA SGD+LVMDE ++F DR GDTFRWRGENV+TTEVE ++S ++ DV VY V +PG G AGMA + + + + Q L + L YA P+F+R+ +D TGTFK QK +
Sbjct: 76 HTIPRIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAF-GHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSESA-TSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQT-DVAVYGVAVPGVEGKAGMAAVADPHS-LLDPNAIYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTR 603
The following BLAST results are available for this feature:
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