TCONS_00066458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066458
Unique NameTCONS_00066458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066458 ID=TCONS_00066458|Name=TCONS_00066458|organism=Clytia hemisphaerica|type=transcript|length=511bp
agCTACGAAGCTCACCTGAAactccaaaacttgatttttattaACTGTTT
AGatcaaaaacctgaaaaagaaaacaaaagtgactgAAATGTAGAAAAGG
GTATAACATTTAAATTCAAGATGCCATCAGCCATTCAAGAACCAAGCATT
ATTGATGTTTGGAATTACAACATTGATGaagaatttgccaaaattagagA
TACACTGGAAAAATTTCCTTATGTTGCTATGGATACTGAATTCCCTGGAG
TTGTTGCAAGACCTATTGGTGATTTCAAAAGCTCTTCAGATTATCAATAC
CAATTATTAAGGTGTAATGTAGATTTACTGAAAATCATTCAAATCGGATT
CACATTTTATAACGATAAAGGGGAACAACCAACAAACGGATCCACCTGGC
AGTTCAATTTCACTTTCAATCTTACGGAAGATATGTATGCACAAGATTCA
ATTGATNATATGGTATTtatgacccagtttgaatttgtttacatttggtt
tgaactTGGTG
Run BLAST on NCBI

protein sequence of TCONS_00066458-protein

>TCONS_00066458-protein ID=TCONS_00066458-protein|Name=TCONS_00066458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MPSAIQEPSIIDVWNYNIDEEFAKIRDTLEKFPYVAMDTEFPGVVARPIG
DFKSSSDYQYQLLRCNVDLLKIIQIGFTFYNDKGEQPTNGSTWQFNFTFN
LTEDMYAQDSIDXMVFMTQFEFVYIWFELG
Run BLAST on NCBI

transcript from alignment at scaffold_455:333797..337930-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066458 ID=TCONS_00066458|Name=TCONS_00066458|organism=Clytia hemisphaerica|type=transcript|length=4134bp|location=Sequence derived from alignment at scaffold_455:333797..337930- (Clytia hemisphaerica)
AGCTACGAAGCTCACCTGAAACTCCAAAACTTGATTTTTATTAACTGTTT
AGGTATACATTTTATGTTTTACTTTGTTGCTTTTCTTTTCCATTAATTTC
AGTATCTTCTCCAAGTAACAATGTAGCGAGAATGGGCCTTCGGACCTGAT
GTTACTTAAATATCGAACTAATCGAACGTGAACGTGATCGAAAACAGCTG
GATTCTCAAAAACATACCTGATCAACACAACCAAACCTTCTGTCTTGTGT
TTACTCTTTCCTTCCCAACAACTTTCGTTTTTGCTTAAGTAGGTTTTAAG
ATCCACAAGTAATGAACCTCTTATAGCTTTATTCAATAAATCTGTTTATA
AACCTTCTGTCAGGTTTCATTCCGTACGTTTTTTATCCACGGTTTCCCCG
ATTTCCCGATAATTAAAAATGACTGTTGATTGTGTTTGATATAGACCTTT
TTTTAAAGAGGCAGCCATGTTGAATAATTATGTACTCCAGCATAAAAACA
ATGATACAGCCATGCATAATTTTTAAAATATGCACGATANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTAATTATGCATGGCTG
TATCATTGTTTTTATGCTGGAGTACATAATTATTCAATATGGCTGCCTCT
TTAAAAAAAGGTCTATTATTGCATTACGATTCTATGTATATGATTACTAT
TAAATTAAATTGGATCACTCTGTTATAGTTCATCTGTCAACCGTAGCTAG
TACCCCTGGGTGTTAGAGTTTTTAAGGGTGGGGGGCGTACAACGAAAGCG
AATATATTGAATACAATTGAATCAATCAAACCTAATTGAAAATAATCAAA
TACAATCGAACATAATCAAAATACCGTCAACTGCTCCAACTTGGGACGAT
TGTAGGCACCATGGGACTCATTGATATCTGGTCTGTATTTTCAATTTATA
CTGTAAGGCGGCAATCACAAATATCTTCATTTCGCGTCCTCGTTGGGTCT
AAAAACTGAGTCGGTCGGTCGGTCGTCCGTCGTAAAAATTTTCGGGTTCC
CATTTTTCCATCCATTTTTGGAGTGCATTCTTGGAGGAAACTGCCAGCCA
GCCAGCACCCAAAACAACCGCGTGTAATGGGTGGTTTAAAATTATGACCT
TTGACCTTTGACCTCCGACCCCAAAATGGCGCATGTAATGATTAACAAAG
TCAAAATGCTGCGAATGCGCTAGAAATCGCTTGCAAAAAATTCTGCAATA
ATATAATTTTTGAAGAAGGAAAGGTCATTGACAGAAAAAGTCCGAGTAAT
TTACCGACTTACCGACTCAATTCTACTCAATTTTCGAGAGTAGGTCGGGC
GACGCGAAACGAAGATATTTGTGATTACCGCCTAAAATCAAAAGAGAATT
GGTGTATTTTTTAATATGCGGTTCATTAAACTCAAATCTAATGACTTTTG
AGGTTCGGTGAAATGGTGGTGAAATGGCCATCCCATGTAGCCGTAGCCTG
CAGGTCCACATCAGTTTTTACTGCCAATATATATAGAATTGTATATAGCT
TGTATATACAGTTTTGTATATAGAACCTGACCTGTCAGTCTAAACTTAAA
CTCCTATATCAGGATTAGAAACTAGGCTAGTCATACCTCTTTTATCTTTT
CCTTTACAACAATACAATGCTGATAAGTTGACACAACACATGTGTACATG
TACATTGACAAGTAATCCCTGAGAGAAGTTTTTATAACATTATAGAAATC
TGCAACAAAAACGAAAGTGGTCTCTTCTGTTGATTGCTTCTCAGAGCTTC
TTTGCAGCTGTTTATCAATTTTCCACCAATGAGGTTGCCACATTTCAAAC
GGCCCTTCTTTTGGGCACCCGTGGCCTTTCAGTGCCTTGCACGACGAGCG
GCTGTAAAATCCGACCCTTCATATATAAATTGTTTCAATCCGTGATCCTT
AGGCTTAGGTTTCTTCAATTTACTGAAGAAAGCGGGAATTTGATGCGTGA
GTTAGATTGTCAACAGAGTGCCGTAAAAAATCATGGAATAAAAGAAGAAC
TTAAAATCTTAAATATTTTCATTCTGAAGAATAGGTGCAAAAAAGTGAAA
CATAGAAAAGTTTCATTTTTCATTGCATTATTCGAACAATGAGCTATGGA
GTACTTTCGTTTTCAAAACTTAGAAAACGTAAGTACTTTGTATCTCTTGA
TAATGAAATTTTCAGACCATGATTCTGACCTATTTCTTAATTAGCATAAA
ATTTCTGATCGCTTGGTATATAATAGGCAGGGTTTTAAGCTCAAAAATAT
TTTTCTTAGACATTTGAGGGTGACTTTGAATAGCTTTGAAAATTTGAGTT
CAATTTCAAAACACTTAAAAATGTTCAAAAAAGAGGATTGGGAAAAGAAA
TTTTCATTTTAAGGCTAAAAATTGAAGGATCGATACAGAAAAGGCGCAAA
AAGGAATTTCCGGATGCTTAAATGCTTGGGAATGGGTGAGTTCCGGTTCA
AGCGTATTAGACTTTTACTGAAATTCCTCTCAAAATTTAGATGTTCAGCT
ATCAGGTCTGGAAAGTCGGAGAGATTTAACATTAATTTGCTCCTTTTAGA
TCAAAAACCTGAAAAAGAAAACAAAAGTGACTGAAATGTAGAAAAGGGTA
TAACATTTAAATTCAAGATGCCATCAGCCATTCAAGAACCAAGCATTATT
GATGTTTGGAATTACAACATTGATGAAGAATTTGCCAAAATTAGAGATAC
ACTGGAAAAATTTCCTTATGTTGCTATGGTAAAAGTTTTACATGTTAACT
GTTTCTTTTTGCTGCAAGTGTGTATTTTCTATAATTAAGTTCATTTGTAT
CCCGTTTTTTTTTTACCTAAACCTTAAATGCTTTATTTCTTGTTCATATC
AGTACACAAAATGTCAAGTAATATAATTGAGTAGATTTTTAAAAGAATAT
ACTTTATGTTACTTCCTTATCATATCTTTCCTGTTATCTTTAGGATACTG
AATTCCCTGGAGTTGTTGCAAGACCTATTGGTGATTTCAAAAGCTCTTCA
GATTATCAATACCAATTATTAAGGTGTAATGTAGATTTACTGAAAATCAT
TCAAATCGGATTCACATTTTATAACGATAAAGGGGAACAACCAACAAACG
GATCCACCTGGCAGTTCAATTTCACTTTCAATCTTACGTAAGTACGCTCT
TATTCTGTTGAAGCTGGATTCACCATAGTCTGGAGATCCATACTCTCTAA
CCAAAACTTACACCATCCAAGCAAATATCCAATCAGAAACTACTCAGTGA
GAATATGGTATTTATGACCCAGTTTGAATTTGTTTACATTTGGTTTGAAC
TTGGTGCCAAAAAAAGCCGTTGATAAGGCTGCCAATCAGATTCACGCAGT
TCCAATCAAAACAATAATATCACGCACGTGACTTCAACCATTGTTCAACA
GCCAATAAAATTCTGCGCCAGGATCCTGTCTTAATTTAATACAGGGTTCA
GACAGACCCTGGAAAACCTGGAAATATGATAAATTTTCAGAAAAATCAGG
GAAACTCAGGGAAACCCAGGGAANCCAGGATCCTGTCTTAATTTAATACT
CGGCCTACTGCTGTCTTTTTACTCTGTTTTTTCGTGTCAAGTCCGGTACA
CACGTCAAAGTTTTTATATCTAGACAGTGTAGGCCAAGCCTCTCAGCTAA
ATTCACCATAGTGCTGATTGTAACATTTCAATCCAGAGAATATTTTTTCA
TGCCATAAAGAAAATATTGAAAGTGTGTGGATACCCCCTGGAAAATGGTA
AAATTTCCAAAAGTACCCTTGGAAAAGTTCTTTTCATACATTGAAGTGAG
GGTGGACGAACTAAAATCAGGCTTTTTATCCCCTGGAAATTTTAGAAACT
TTTACCCCTTTGGAAAGATGAAAAACACCGCTTGAAAATTTTTCTCGGAC
TACCCACTGGAAATGTTCGTCCATGGATGAGTTGCAATTGATGTAAGATT
TATGACAATTCAATGTTGAAAATAGTTTAACAAATTGTATGTTTTCAGGG
AAGATATGTATGCACAAGATTCAATTGATNATATGGTATTTATGACCCAG
TTTGAATTTGTTTACATTTGGTTTGAACTTGGTG

Coding sequence (CDS) from alignment at scaffold_455:333797..337930-

>TCONS_00066458 ID=TCONS_00066458|Name=TCONS_00066458|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_455:333797..337930- (Clytia hemisphaerica)
GGAAGATATGTATGCACAAGATTCAATTGATNATATGGTATTTATGACCC
AGTTTGAATTTGTTTACATTTGGTTTGAACTTGGTGATACTGAATTCCCT
GGAGTTGTTGCAAGACCTATTGGTGATTTCAAAAGCTCTTCAGATTATCA
ATACCAATTATTAAGGTGTAATGTAGATTTACTGAAAATCATTCAAATCG
GATTCACATTTTATAACGATAAAGGGGAACAACCAACAAACGGATCCACC
TGGCAGTTCAATTTCACTTTCAATCTTACATGCCATCAGCCATTCAAGAA
CCAAGCATTATTGATGTTTGGAATTACAACATTGATGAAGAATTTGCCAA
AATTAGAGATACACTGGAAAAATTTCCTTATGTTGCTATGGGAAGATATG
TATGCACAAGATTCAATTGATNATATGGTATTTATGACCCAGTTTGAATT
TGTTTACATTTGGTTTGAACTTGGTGATACTGAATTCCCTGGAGTTGTTG
CAAGACCTATTGGTGATTTCAAAAGCTCTTCAGATTATCAATACCAATTA
TTAAGGTGTAATGTAGATTTACTGAAAATCATTCAAATCGGATTCACATT
TTATAACGATAAAGGGGAACAACCAACAAACGGATCCACCTGGCAGTTCA
ATTTCACTTTCAATCTTACATGCCATCAGCCATTCAAGAACCAAGCATTA
TTGATGTTTGGAATTACAACATTGATGAAGAATTTGCCAAAATTAGAGAT
ACACTGGAAAAATTTCCTTATGTTGCTATGGGAAGATATGTATGCACAAG
ATTCAATTGATNATATGGTATTTATGACCCAGTTTGAATTTGTTTACATT
TGGTTTGAACTTGGTGATACTGAATTCCCTGGAGTTGTTGCAAGACCTAT
TGGTGATTTCAAAAGCTCTTCAGATTATCAATACCAATTATTAAGGTGTA
ATGTAGATTTACTGAAAATCATTCAAATCGGATTCACATTTTATAACGAT
AAAGGGGAACAACCAACAAACGGATCCACCTGGCAGTTCAATTTCACTTT
CAATCTTACATGCCATCAGCCATTCAAGAACCAAGCATTATTGATGTTTG
GAATTACAACATTGATGAAGAATTTGCCAAAATTAGAGATACACTGGAAA
AATTTCCTTATGTTGCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041575XLOC_041575Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066458-proteinTCONS_00066458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066458-exon-scaffold_455-1575043694:337879..337930TCONS_00066458-exon-scaffold_455-1575043694:337879..337930Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1575043694:335153..335331TCONS_00066458-exon-scaffold_455-1575043694:335153..335331Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1575043694:334744..334937TCONS_00066458-exon-scaffold_455-1575043694:334744..334937Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1575043694:333797..333882TCONS_00066458-exon-scaffold_455-1575043694:333797..333882Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1510915933:337879..337930TCONS_00066458-exon-scaffold_455-1510915933:337879..337930Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1510915933:335153..335331TCONS_00066458-exon-scaffold_455-1510915933:335153..335331Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1510915933:334744..334937TCONS_00066458-exon-scaffold_455-1510915933:334744..334937Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1510915933:333797..333882TCONS_00066458-exon-scaffold_455-1510915933:333797..333882Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1491911889:337879..337930TCONS_00066458-exon-scaffold_455-1491911889:337879..337930Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1491911889:335153..335331TCONS_00066458-exon-scaffold_455-1491911889:335153..335331Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1491911889:334744..334937TCONS_00066458-exon-scaffold_455-1491911889:334744..334937Clytia hemisphaericaexon
TCONS_00066458-exon-scaffold_455-1491911889:333797..333882TCONS_00066458-exon-scaffold_455-1491911889:333797..333882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:333797..337930 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
208.664	223.701	247.613	236.752	0	4.63592	0	0	48.2605	42.9144	44.7868	44.9859	51.1254	71.6879	47.8806	44.5512	57.0826	52.4577	36.9822	33.0333	66.453	61.6339	77.4221	76.8678	5.39367	3.60259	36.2628	38.4405	48.8619	42.9441
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00066458 vs. Swiss-Prot (Human)
Match: CNOT7 (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.100e-51
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:  121 MPSAIQEPS--IIDVWNYNIDEEFAKIRDTLEKFPYVAMDTEFPGVVARPIGDFKSSSDYQYQLLRCNVDLLKIIQIGFTFYNDKGEQPTNGSTWQFNFTFNLTEDMYAQDSIDXMV 465
            MP+A  + S  I +VW  N+DEE  KIR  + K+ YVAMDTEFPGVVARPIG+F+S++DYQYQLLRCNVDLLKIIQ+G TF N++GE P   STWQFNF FNLTEDMYAQDSI+ + 
Sbjct:    1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLT 117
The following BLAST results are available for this feature:
BLAST of TCONS_00066458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT71.100e-5167.52CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
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