|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065270 ID=TCONS_00065270|Name=TCONS_00065270|organism=Clytia hemisphaerica|type=transcript|length=4438bpRun BLAST on NCBI protein sequence of TCONS_00065270-protein >TCONS_00065270-protein ID=TCONS_00065270-protein|Name=TCONS_00065270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MMPRSFLLKNYYPRNDMEDIQAAAANLLDLASSAPAPKEKIVNDVLRYNDRun BLAST on NCBI transcript from alignment at scaffold_435:370327..414905+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065270 ID=TCONS_00065270|Name=TCONS_00065270|organism=Clytia hemisphaerica|type=transcript|length=44579bp|location=Sequence derived from alignment at scaffold_435:370327..414905+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:370327..414905+ >TCONS_00065270 ID=TCONS_00065270|Name=TCONS_00065270|organism=Clytia hemisphaerica|type=CDS|length=7992bp|location=Sequence derived from alignment at scaffold_435:370327..414905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065270 vs. Swiss-Prot (Human)
Match: ZN333 (Zinc finger protein 333 OS=Homo sapiens GN=ZNF333 PE=2 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 1.582e-39 Identity = 73/144 (50.69%), Postives = 101/144 (70.14%), Query Frame = 3
Query: 3777 DESYTCHKCGKIFTYKSYLERHIKYVCPDSAGRTWKCTYCGKAFQYPCYLRRHIRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHSKE 4208
D+SY C+KC K F Y S L RH K +A + + C CG+AF+Y LRRH+R+HTGE P++C +C + F R+ +L H RNHTGEKPY C C +AF + + L+ H+RTHTGEKP++C QCGK+F + SL+TH+ TH++E
Sbjct: 363 DKSYACNKCEKSFRYSSDLIRHEKT---HTAEKCFDCQECGQAFKYSSNLRRHMRTHTGEKPFECSQCGKTFTRNFNLILHQRNHTGEKPYECKDCGKAFNQPSSLRSHVRTHTGEKPFECSQCGKAFREHSSLKTHLRTHTRE 503 HSP 2 Score: 135.576 bits (340), Expect = 2.237e-32 Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 3
Query: 3777 DESYTCHKCGKIFTYKSYLERHIKYVCPDSAGRTWKCTYCGKAFQYPCYLRRHIRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHS 4202
++ Y C CGK F S L H++ + + ++C+ CGKAF+ L+ H+R+HT E PY+C++C + F ST L H R HTGEK Y C C + +R + LK HMRTHTGEKPY C +CG++FS+ SL+ H THS
Sbjct: 447 EKPYECKDCGKAFNQPSSLRSHVRT---HTGEKPFECSQCGKAFREHSSLKTHLRTHTREKPYECNQCGKPFRTSTHLNVHKRIHTGEKLYECATCGQVLSRLSTLKSHMRTHTGEKPYVCQECGRAFSEPSSLRKHARTHS 585 HSP 3 Score: 131.339 bits (329), Expect = 5.099e-31 Identity = 60/142 (42.25%), Postives = 88/142 (61.97%), Query Frame = 3
Query: 3777 DESYTCHKCGKIFTYKSYLERHIKYVCPDSAGRTWKCTYCGKAFQYPCYLRRHIRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHS 4202
++ + C +CGK F S L+ H++ + + ++C CGK F+ +L H R HTGE Y+C C + R + L+ H+R HTGEKPY C +C RAF+ + L++H RTH+G+KPY C +CG++F QS L HV THS
Sbjct: 475 EKPFECSQCGKAFREHSSLKTHLRT---HTREKPYECNQCGKPFRTSTHLNVHKRIHTGEKLYECATCGQVLSRLSTLKSHMRTHTGEKPYVCQECGRAFSEPSSLRKHARTHSGKKPYACQECGRAFGQSSHLIVHVRTHS 613 HSP 4 Score: 130.954 bits (328), Expect = 6.958e-31 Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = 3
Query: 3777 DESYTCHKCGKIFTYKSYLERHIKYVCPDSAGRTWKCTYCGKAFQYPCYLRRHIRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHSKEHSLNKGKKKLAL 4244
++ Y C++CGK F ++L H + + + ++C CG+ L+ H+R+HTGE PY C +C RAF + L++H R H+G+KPY C +C RAF +S+ L H+RTH+ +PY+C QC K+F S SL H TH ++ G L++
Sbjct: 503 EKPYECNQCGKPFRTSTHLNVHKRI---HTGEKLYECATCGQVLSRLSTLKSHMRTHTGEKPYVCQECGRAFSEPSSLRKHARTHSGKKPYACQECGRAFGQSSHLIVHVRTHSAGRPYQCNQCEKAFRHSSSLTVHKRTHVGRETIRNGSLPLSM 655 HSP 5 Score: 124.02 bits (310), Expect = 1.069e-28 Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 3
Query: 3864 SAGRTWKCTYCGKAFQYPCYLRRHIRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHSKE 4208
S +++ C C K+F+Y L RH ++HT E + C +C +AF S++L+RH+R HTGEKP+ C+QC + F R+ +L H R HTGEKPY+C CGK+F+Q SL++HV TH+ E
Sbjct: 361 SGDKSYACNKCEKSFRYSSDLIRHEKTHTAEKCFDCQECGQAFKYSSNLRRHMRTHTGEKPFECSQCGKTFTRNFNLILHQRNHTGEKPYECKDCGKAFNQPSSLRSHVRTHTGE 475 HSP 6 Score: 96.2857 bits (238), Expect = 5.116e-20 Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 3
Query: 3936 IRSHTGESPYKCDKCDRAFVRSTDLQRHIRNHTGEKPYRCTQCSRAFARSTDLKRHMRTHTGEKPYKCWQCGKSFSQSGSLQTHVHTHSKE 4208
IRS G+ Y C+KC+++F S+DL RH + HT EK + C +C +AF S++L+RHMRTHTGEKP++C QCGK+F+++ +L H H+ E
Sbjct: 359 IRS--GDKSYACNKCEKSFRYSSDLIRHEKTHTAEKCFDCQECGQAFKYSSNLRRHMRTHTGEKPFECSQCGKTFTRNFNLILHQRNHTGE 447 The following BLAST results are available for this feature:
BLAST of TCONS_00065270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.