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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065152 ID=TCONS_00065152|Name=TCONS_00065152|organism=Clytia hemisphaerica|type=transcript|length=2293bp
ttgatttttttttcaaaatcttttcaaaccaaatcgattttatttttaat
ttcaaaataattttcaaatcaaatcgaatttcaatctgaaaataaaataa
aattgattttttggccATTGCTCCAAACCACTATACCTCAAAACAACCTT
TGCTGAACGCTCGGAAAAGGCAAGACTGGCAACTGGCATTCCTTTTGGTT
ATGCACGCTGCTGTTTGGTTTTAGTCACAAAAGaTGGCTACTAACAATGA
CAGAAAACTTTGGGAAGAACGtgcacaaaaactgaaaaggaAGAGAATGG
GTCAGGACACAGTGAAGGGTGATAAAGCTGGTGCTGTTGGTTCTCATATT
TTAGCCGAGAGAGAAATGACTGTTCAACGTCTTTCTAGTGTTGCTACTGG
GAAAGCAAtgaaattcaataaaatggggCCTCAGGAATTCGTGGCCTATC
CATTTGATGAATTGACAATCGAAAATTTGATTCAAGCGTGCAGTGCACAT
TTTCGAGATGAATTGCTTGACAATCAAAGGTGTGATATTTTGCAATCACA
AGATGGTCCTTCTTGTTCTAAACTTTCACACATTAAAAGTTATAAGGTGA
TTTATGTTCGTTTAATTACAAATGTGAATCAAGCATCCATTTCCATAAGA
AAGTATTTCGATAAGATGAAGATGCCACCTCGCAGCCCTTTATCCTCAAT
GAACGTTTTAAACTCTTCTGCAGTATCAACACCAAGCAAATCCATTAAGC
TTCAAATACCTCAAAAGCAAAAGCCTGTCCAAACTACTCAATATCCAAAA
AGCTTGTCCATCTCAAACATGCTTCAATTTGGAACAGCAATAACGAAAAT
GCAAAATCCACCCGTGGAAATTGAGCTCCAAGAAATTGACGTTTCAGCTA
TGAAATGGAGCTATCCaacatcaaaaagattttctatcTCGGAGACTCCT
CTTACCAAAGGTGGATTTAGGGAAGTGTCTGAAGCCATCGATGTGGacac
aaaaaagaaatttgttgtGAAAACCTTCCTTCCAGAAGTTTTCAAAGTAA
TGGAAGAAGTGAATACTGTTATTCCACTTAATAAAGAAAGTGAGGAGTCT
CTATCAAAAAAGGCCATACAAGCCCATGCCCTAGCTAAAAATGTCACCga
ttcattgaaaaaattatgCTTCAATAATAACTTAATGGACGATTTTGGGG
AGTTTTTTACATATAATAAAGCGTACTTAGGATCAAAGGTGATGCACGgt
ggagagaaaaaaattgtcatgGTGGAAGAGTACGTTGATGGAGAATTTAT
TAAATTTATCAACAATGATGGCAAAATCATTCATGGTCAGCCAAAAGATC
TGGACCGTTTACTGAAAGCCCAATGTCTTGCCCACTACTCACTCGTGAAA
TCTGGGCAAAGGTTTATGATTGTTGACATCCAAGGTTCAGGTTATACACT
TTACGATCCTGAAATTGCTACGACTGGTGATGCTATAGAAAATGAGCGTT
TAAACTTTAATCTTGGCAATTTGTCCAAAGCTGCAATTGATTTGTTTATC
ATTGCTCATGTTTGCAATAGATTCTGTAAACTTGTTGGGCTGGAGCAACC
TCCTTCCTCAAAGATCGACTTGTCAAAATAAACTACACAACTGTTTGAAG
CAATTTCTTACGTTTATATTTTACtcgattttatttttgttctagGTTAT
ATATTAAAACTTATTGTTTCactatgaaaataatatattaaaataataat
tcCTATTTACaaatatataaacaaacaaTTCATGCGTAAATCACAAATAA
TAGTTAAACCCGAGAAAGATAGTAGGGGAGTACAAAGATGAAagacaaaa
atgggtgctgggtatgtacgggtcattttttaaactttaaggATTACAGA
AATCAGAACAATTTAAAGTTGTCCCTTCAAGGATTGGAAAATTCATGCTC
TTTGAGTTTCTAGAGAAAGATTGGTAGATAGTCTTTCTTAGGAGGAAAAT
TATCGAAAAtcgaagaacatttttaaaaatgtctctccaagggtcacttt
ttcactgaAATTAGGTCTTTCTAAGAGTTGTCCCTCCCGCACATACCCGT
TATCtccaaacctagtacccccgaGGCCAGCACTCCAAAACGACCTAGAC
ATTTTCTTGGTTTTCTGTGTCGGCGAGAACCAAAAGCTTTTTTGGGGCCC
TAGTTaatattttaaaaagctttGTGTATAAATACTAAAGAATAtagata
attttttataatattgTCGAATGAAGTTAATGTGTTTTATTTC Run BLAST on NCBI transcript from alignment at scaffold_433:62979..68136+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065152 ID=TCONS_00065152|Name=TCONS_00065152|organism=Clytia hemisphaerica|type=transcript|length=5158bp|location=Sequence derived from alignment at scaffold_433:62979..68136+ (Clytia hemisphaerica)
ttgatttttttttcaaaatcttttcaaaccaaatcgattttatttttaat
ttcaaaataattttcaaatcaaatcgaatttcaatctgaaaataaaataa
aattgattttttggccATTGCTCCAAACCACTATACCTCAAAACAACCTT
TGCTGAACGCTCGGAAAAGGCAAGACTGGCAACTGGCATTCCTTTTGGTT
ATGCACGCTGCTGTTTGGTTTTAGTCACAAAAGGTAAGCTCACATGAATT
CTGTAAGATTCGTTTATAGTATAGTATATACCTTTTTTCTTGACTACTAG
GCCTGGGGGTACTAGGTTGGTTTGCTATTAACAAAACCAACCCTGAGCTG
TAGTTTTTGGTATACCTGAGAGCATGAAggtaataagaaaataaagaatt
cTAATTTTCTTATTACCTTCATGCTGAGAGGGAAAATTTATGGTTTTCGT
GGGGTTTTGGGGCCCTTTATTTACTACAGGACAGAGTGGGTTGGTTTTTG
TAACCCTTGACTGCTCTTGGAGAGATATTTTCGAGGTGTGTgcgtgaaaa
aggtacccttaactTGGCCATCAGTCAGCATCACTTGACTTGCACATACC
AACATACATACTACCCATACACACCCCCAGATTATTTTAGGCTATTAAAA
AGGAAGGGATCTGCAACACAATCCATCAGTCCCATCAAGATGATATAATT
TTTTCTCAAGGCATCCTCACTCCATGACAGACCACCATAGAATGAATGTT
CAATTCACACAGCTTCCCTTTATAAACTTTCACCTGGACTCTCCTCCACA
GAGTCTAACTacactttttcaaaaactaacCATAGATTTGAAATCAAACC
TTCTTTGTATGAAAGCATACCTAATAAATTCTCAATagtataaaaattta
aaaaattgaaccTGAGAATTAATCAAATTATTAATTAAAATTGATCACCC
TCAGGGATGGAGCGCACTTTGAAATAAAAGagagttcattctatggtggt
cTATCATGGAGTGAGGAtgtctaaaattatttttggtacATTTCCTCCTC
AAACCTTCCCCTTTCAAAATACCAAAAGGATTTGTCAACATGCAAGCTTT
AAATGATCCAACTAGACTATAAATTTTGAACTTTAGAGGCCTGCCGCACC
GCACCTTCCATGACGGACGCGTGGCGTCGACCGTTCCGGCATATAAATAT
GAAAGGCAAAATATGGTTTGAAACTGATAATGCCTGAAATAGTAAAAtgc
tcaggtaagttatggcatgtccaaaaaactgaaaaattaccataattttt
ggagggcattagccggcagaatctgaccaaacaaatgactcattatgaag
ggtactatgataaAGTTTCTCAGacgatgtgtaacctaattgtttggcgc
tcattttcgcgaaaaacgcAAATATTCCATTATTACATACgtcataattg
atgacgtcataaaaattgaaaattgaatttctcgagaATGGTTTATCCAT
AATTCACTccaaattttaaacaaagataGGTCTTGGTAAACTCCatcttt
taacgaaaaaattttttaaaaattttgatgactttgatgacgtcagcaaa
aataagcagaattcgaaaattgcaaatttttgatgaggtcatcaaaattt
tgaaaaatttttaacgtTAAAAGATGGAGTTTACCAAGACCTATCTTTGT
TTAAATTTTGGAGtgaattggataaaccattctcgagaaattcaattttt
atgacgtcatcaattatgacGTAATAATGGAAAATTTgcgtttttcgcga
aaataagcgccaaaacaattaggtaacacatCCTCTGAGAAACTttatca
tagtacccttcataaTCAGTCATTTAAGTTTGGTCAGATTATGCCGGCTA
ATGCCCTCCAAAAATTATGGCAATTTttggacatgccataacttacccga
gtgtTATGTTACAATCAATGAATAAGAGTAATAAATGTACAACTATCACT
CAAAACTGGTGCTAAGAACCCCACATAACCCAAGATAAAAAACACGGTTC
AGCACGGTTCTGCGAAAAGCAgcaaaaaatacctcaaaaaCCCTTCAAAA
AGCCCCTTAAAAAGACCTGTTTCTCACTTCCCataacaaaaatcttttaa
aaatacaTCATAAAGATGTTCAAATACACTCTAGGtttgaaaaatataac
attATAGCACTCGAAATTCATATTTTAGGTAATATCCATTAGAGGTCCTC
CAGAACAGCTTTTCCAAACTTTTTAACTACTAAAACTCTTTTATGCAGCT
TAGCTACCATCTTTAGGGGATTGTTTACAAAGTGGGGCCCAATATTTGGC
TCCAATAAGCCGATTCTGGCGCTAATTGGCCGTtgtaaccattgagtttc
aagcccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaa
ttgaagccttaaaatatgcgccgtatttttgatgacggattgaatctagc
aattcctttgttttcgagtgatatatttttcgaaattaagcggtaaattt
tagtctcaatctgtcatttgtgtaaaaaccaggcgggtcgctcaaggccg
cgcaactttggtaggatttgttggcttcaaatcctaccaaagagattgat
ttctagcccttcgggcttataattCATTGGTTGTAACTACCGAAATCTAT
TTTCGACATCGAAAATTCAATTGCAAAAACATTATGTTTTGGCAATCCGA
AATCGAATCCGATTaccccgattttcggaaaaagtaACCCGATTCggaaa
attcaacctttccttCAACCTTTGCcacaaaaatgaagtttatatctGCA
ACATACCCAAAGATATAGCCAATTTAATATGGTAACCAGTTTTGCGTAGA
TCTATGGCATCCGCCAGGTAGACTTGCGTAGATCTACGGCATCCGCCAGG
TAGACTTGCATAGATCTACGGCATCCGCCGCCTAAAGTTAAAGTTAAATC
GGAATTCATAAacattaaaaatggtagactttgTATGGTGTCGCNGTAAT
TGTCGACTTATATATCTAAAAATTTCCcccttgttttttcttttgcagaT
GGCTACTAACAATGACAGAAAACTTTGGGAAGAACGtgcacaaaaactga
aaaggaAGAGAATGGGTCAGGACACAGTGAAGGGTGATAAAGCTGGTGCT
GTTGGTTCTCATATTTTAGCCGAGAGAGAAATGACTGTTCAACGTCTTTC
TAGTGTTGCTACTGGGAAAGCAAtgaaattcaataaaatggggCCTCAGG
AATTCGTGGCCTATCCATTTGATGAATTGACAATCGAAAATTTGATTCAA
GCGTGCAGTGCACATTTTCGAGATGAATTGCTTGACAATCAAAGGTGTGA
TATTTTGCAATCACAAGATGGTCCTTCTTGTTCTAAACTTTCACACATTA
AAAGTTATAAGGTGATTTATGTTCGTTTAATTACAAATGTGAATCAAGCA
TCCATTTCCATAAGAAAGTATTTCGATAAGATGAAGATGCCACCTCGCAG
CCCTTTATCCTCAATGAACGTTTTAAACTCTTCTGCAGTATCAACACCAA
GCAAATCCATTAAGCTTCAAATACCTCAAAAGCAAAAGCCTGTCCAAACT
ACTCAATATCCAAAAAGCTTGTCCATCTCAAACATGCTTCAATTTGGAAC
AGCAATAACGAAAATGCAAAATCCACCCGTGGAAATTGAGCTCCAAGAAA
TTGACGTTTCAGCTATGAAATGGAGCTATCCaacatcaaaaagattttct
atcTCGGAGACTCCTCTTACCAAAGGTGGATTTAGGGAAGTGTCTGAAGC
CATCGATGTGGacacaaaaaagaaatttgttgtGAAAACCTTCCTTCCAG
AAGTTTTCAAAGTAATGGAAGAAGTGAATACTGTTATTCCACTTAATAAA
GAAAGTGAGGAGTCTCTATCAAAAAAGGCCATACAAGCCCATGCCCTAGC
TAAAAATGTCACCgattcattgaaaaaattatgCTTCAATAATAACTTAA
TGGACGATTTTGGGGAGTTTTTTACATATAATAAAGCGTACTTAGGATCA
AAGGTGATGCACGgtggagagaaaaaaattgtcatgGTGGAAGAGTACGT
TGATGGAGAATTTATTAAATTTATCAACAATGATGGCAAAATCATTCATG
GTCAGCCAAAAGATCTGGACCGTTTACTGAAAGCCCAATGTCTTGCCCAC
TACTCACTCGTGAAATCTGGGCAAAGGTTTATGATTGTTGACATCCAAGG
TTCAGGTTATACACTTTACGATCCTGAAATTGCTACGACTGGTGATGCTA
TAGAAAATGAGCGTTTAAACTTTAATCTTGGCAATTTGTCCAAAGCTGCA
ATTGATTTGTTTATCATTGCTCATGTTTGCAATAGATTCTGTAAACTTGT
TGGGCTGGAGCAACCTCCTTCCTCAAAGATCGACTTGTCAAAATAAACTA
CACAACTGTTTGAAGCAATTTCTTACGTTTATATTTTACtcgattttatt
tttgttctagGTTATATATTAAAACTTATTGTTTCactatgaaaataata
tattaaaataataattcCTATTTACaaatatataaacaaacaaTTCATGC
GTAAATCACAAATAATAGTTAAACCCGAGAAAGATAGTAGGGGAGTACAA
AGATGAAagacaaaaatgggtgctgggtatgtacgggtcattttttaaac
tttaaggATTACAGAAATCAGAACAATTTAAAGTTGTCCCTTCAAGGATT
GGAAAATTCATGCTCTTTGAGTTTCTAGAGAAAGATTGGTAGATAGTCTT
TCTTAGGAGGAAAATTATCGAAAAtcgaagaacatttttaaaaatgtctc
tccaagggtcactttttcactgaAATTAGGTCTTTCTAAGAGTTGTCCCT
CCCGCACATACCCGTTATCtccaaacctagtacccccgaGGCCAGCACTC
CAAAACGACCTAGACATTTTCTTGGTTTTCTGTGTCGGCGAGAACCAAAA
GCTTTTTTGGGGCCCTAGTTaatattttaaaaagctttGTGTATAAATAC
TAAAGAATAtagataattttttataatattgTCGAATGAAGTTAATGTGT
TTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065152-exon-scaffold_433-1491911889:62979..63211 | TCONS_00065152-exon-scaffold_433-1491911889:62979..63211 | Clytia hemisphaerica | exon |
| TCONS_00065152-exon-scaffold_433-1510915933:62979..63211 | TCONS_00065152-exon-scaffold_433-1510915933:62979..63211 | Clytia hemisphaerica | exon |
| TCONS_00065152-exon-scaffold_433-1575043694:62979..63211 | TCONS_00065152-exon-scaffold_433-1575043694:62979..63211 | Clytia hemisphaerica | exon |
| TCONS_00065152-exon-scaffold_433-1491911889:66077..68136 | TCONS_00065152-exon-scaffold_433-1491911889:66077..68136 | Clytia hemisphaerica | exon |
| TCONS_00065152-exon-scaffold_433-1510915933:66077..68136 | TCONS_00065152-exon-scaffold_433-1510915933:66077..68136 | Clytia hemisphaerica | exon |
| TCONS_00065152-exon-scaffold_433-1575043694:66077..68136 | TCONS_00065152-exon-scaffold_433-1575043694:66077..68136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:62979..68136 + |
Blast
The following BLAST results are available for this feature:
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