TCONS_00064703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064703
Unique NameTCONS_00064703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064703 ID=TCONS_00064703|Name=TCONS_00064703|organism=Clytia hemisphaerica|type=transcript|length=1139bp
ATTTGATTCAAATAAATCTGGTTCTCATAGGTTATATGGACTGGTCAATA
ATAATCAAAAACTTGATATGAAAAATGGCACATTTTTGCCACTTTATATT
TTACTTATCTCCCTAATATTTCACCGTGGGGACACACAGACAGTAAGTAT
CACACGTCAAGATAATGGAGGTGATGTCTTTCAAGGAATAACAGACTGTT
CAAAATATGATGGAGAATATTTAAGAGATAATGAATGTGTTTGTAAAAGA
TTGAATACGCCTGGCACATTTTTTACTGGATGTTTGTATGGAGATGATGT
AGCAAGCAAGACAGGTTGTCCTTTGAAGCTTCTTGGTAGCTCCTCCGTCA
CATATCTTTCTCATCATGACGATCTTTTGCGAAAGAGTATACAATACACA
GACAACACACCACTCAATACTTGTACGAAACTCGAGATCCTTATGGTTGA
TCAATGGTCAAATGNACACCACTCAATACTTGTACGAAACTCGAGATCCT
TAAGGTTGATCAATGGTCAAATGTAGATTTTTGGCAACCTTCTGGAACGC
CAGGACTTATTGGAACACTTAAAGTTGACAACGGATTTCAGTTAACGTGG
ATACTTACTCCAGACCAAGCAGTATGGGAGAATTTGAAAGGGCGTGTTTT
ACGAATTTCAATGAAATGTACGTTAGTTGAACAAAACAATGATGTTTCGA
TCAGAAATCTTTGTCTACCAATCAAAGTTACCGGAACACGAGTTTACGCA
ACTCCTCTATCTCCGAATTTTccaacgacaacaacaacaacaacaaccac
aacGACTACCACAACCACACCGACTACCACAACCACACCCACAACAACTC
CTTTGACTACTACTACAATAAAATCTACTCAAGAGACCACGGCTCCTATA
ACGACTGCGCCACCAATAGAACCAGTCACCACGACACAGAAAACAACACT
TGTAACCATACCTGTCCAAACTGGCGACCCAACAACCAAAGACCCTACGA
TCCCACAAACAACATCCTCTATAAAGGTAACAACAACACCTTCAGGGACG
GAAGACCCTCCCACAACTTTGCAACCAGATCTCACCACATCTCAAACTAC
TACTGCTGAAAGCAAAAACGAAACGACTCTTGGAGCTCC
Run BLAST on NCBI

protein sequence of TCONS_00064703-protein

>TCONS_00064703-protein ID=TCONS_00064703-protein|Name=TCONS_00064703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MVKXTPLNTCTKLEILKVDQWSNVDFWQPSGTPGLIGTLKVDNGFQLTWI
LTPDQAVWENLKGRVLRISMKCTLVEQNNDVSIRNLCLPIKVTGTRVYAT
PLSPNFPTTTTTTTTTTTTTTTPTTTTTPTTTPLTTTTIKSTQETTAPIT
TAPPIEPVTTTQKTTLVTIPVQTGDPTTKDPTIPQTTSSIKVTTTPSGTE
DPPTTLQPDLTTSQTTTAESKNETTLGA
Run BLAST on NCBI

transcript from alignment at scaffold_421:109373..112872-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064703 ID=TCONS_00064703|Name=TCONS_00064703|organism=Clytia hemisphaerica|type=transcript|length=3500bp|location=Sequence derived from alignment at scaffold_421:109373..112872- (Clytia hemisphaerica)
ATTTGATTCAAATAAATCTGGTTCTCATAGGTTATATGGACTGGTCAATA
ATAATCAAAAACTTGATATGAAAAATGGCACATTTTTGCCACTTTATATT
TTACTTATCTCCCTAATATTTCACCGTGGGGACACACAGACAGTAAGTAT
CACACGTCAAGATAATGGAGGTGATGTCTTTCAAGGAATAACAGACTGTT
CAAAATATGATGGAGAATATTTAAGAGATAATGAATGTGTTTGTAAAAGA
TTGAATACGCCTGGCACATTTTTTACTGGATGTTTGTATGGAGATGATGT
AGCAAGCAAGACAGGTATCTTTTAAAGGGATAATCAGATGGTTTGTAATA
TTTGGCATGTGGGATCCTTCTATTGTCCTGAGCAAAATCTCAAAATATTG
TGGCCTAAATATTTTCCAAAGTCGAGATATTTAAGTTACAAGTTTTTGGC
TTTTAGGATGAAAACAATAGAATTTCAACGTAAAAACCGTGTAAGAACTC
ATCTTTAAAAATATCAAATTTTGATATCTCGATTTTGGAAGATTGTTTCG
CAAAAATACTTTGAGGTTTTACTAAGGACCACGGAAGGTTTCTATAATCT
AAATATCCCAATATCTTATTTTTCCTTTAACTTTTTTTTCTACCTGTCTT
TTCATCTGTCTAAAAAGATTTTGGGCGAGGTTTGGACATTCAGAGAGGTA
CTTCCAGTGGTTTGCGTGATGGTACTGTCCTGACTGAACTTTCGGGGAAA
CATGATACAGGGTTGACACAGGGGTTGTTTTTCACCAGGATCAATTTCTT
TTCACTTTGCCTGGAGATATCCATGTTATGTTCTCCCCTTTTCAATGTAT
ATATCAAGTTATAAAATCATTGGACGGGTTCCTATCTAGGTGATAACTGA
TGCAAACACTGCATGTTACCTACGATGTCGGTCAAAATATATTGAGAATT
TTAGTTGATTCCTCGTTTTTAGCATTTTAAAGTTTGGGCGAAGAAGTGGC
TTTAGGGCTATTTGTTATTTAATCGAATATTTCAATTTGGGTGGTGGGCT
TTATAGACTTCCAGGCCATATTCTGAGCCCTTTTGGACCGTTCTTGAACT
TTTGGATCCTGAGATCCTAAGGTCCTAAGTCTCATGTTAAAACTAAGAGT
TAAAACTACACATCGTTTGTGGTTTTGAAAATTCGTGGGAATTTCCCTTT
TTTTCTAAAACATTGCGACCATGATTGTATGAAAGTTCTGTTCTGTTCAT
ATTTAGGTTGTCCTTTGAAGCTTCTTGGTAGCTCCTCCGTCACATATCTT
TCTCATCATGACGATCTTTTGCGAAAGAGTATACAATACACAGACAACAC
ACCACTCAATACTTGTACGAAACTCGAGATCCTTATGGTTGATCAATGGT
CAAATGNACACCACTCAATACTTGTACGAAACTCGAGATCCTTAAGGTTG
ATCAATGGTCAAATGTAGATTTTTGGCAACCTTCTGGAACGCCAGGACTT
ATTGGAACACTTAAAGTTGACAACGGATTTCAGTTAACGGTCAGTATCTA
CCAAATTTGTCCCTGGAGTATAATAAGCGCAATTCCATCGAGTTTCTGGT
AGCTATTATCAACTTTTTTATGCTTACTGATAGCGCCAAATAATATTCTC
TGGGTCAATCAGTAACTTAAATAAAGCCTGGGATACACGGGGACGAGGTT
GTTGTTTTTTCAAACGAGTTCTTAAAGACTACTGGTTCGCCAGTCCAATG
GGATGGAATCACGTGGGAGTTGGGTAAGTGCATGAAGAAAAAAGTTGTCA
GCGGGAGGAGCTGAAAATTAATCAGCAATCTTATACTAACTCTTTTTCTT
CCTCCTATACAGATCCTTAGCAAACGCCCGCCACCTACGTTTCCACCCTC
CAATATTATATAGTTTTATAATTTAATGAATTCATGATACTCATGACGTA
ATGTTTTCTACGGAAAGACCCCGGTTTTTGCAAGTAGTGGCAAAATTTTA
TACAACTTTTGTCTAGTTTAAATTTGCCACTACTGGCTGAAACCGGGGTA
TTTCCGTAGAAAACATTACGTCATGAATATCATGATTATAAAACTCCTTT
CCATTTACAGTGGATACTTACTCCAGACCAAGCAGTATGGGAGAATTTGA
AAGGGCGTGTTTTACGAATTTCAATGAAATGTACGTTAGTTGAACAAAAC
AATGATGTTTCGATCAGAAATCTTTGTCTACCAATCAAAGTTACCGGAAC
ACGAGGTTTGTGAAAACTGTTCTCACTCAAGACCATGTTTAGAAGTTACG
GTTTTGTTTCACTCCGTATAAATGTTTGTAACGGACAGGAAGCGTTCATA
CTGATTTCGGAACGAAATCAATAAATCGAAAAATTTCGGAAATAGGTGGG
TTCCGCTCCGATGAAAATAGTGGAGCAAAACCATTTTGACCTGTTCTTCT
TTGTGGCATCTTTTTTTTGACGTTTCGAATATTGACCAAACAAAAGACAA
GTTGCAATTTGCATACTTTTTGATCACGTTACCAAAGTCTCCTCTTGGGA
TTGGCCTATTTTTTATGATCAAAAAGTTTGCAAAATAAAGCGATTTTGGT
ACGTAAGCTCCATCTTTTAACAATAAAAAGAGGCAAAAGCCTTCCAGACC
AGTGTTTTTATAATGACTACGTATTGACGTTCACACAGTGTTTGGGGACG
TTTCGTTTCGGAGTGATACAAAACCGTAACGTCTGAACATGGTCTAAGGG
TCTAAGTCCTTGGCAAATATTGATGCGCTTTCTTTCTGCTACATTTGCTT
TCTGAGTTTGAAGCCTGCAAATTTGGACAACACTTGAAATCACTCAAAAG
CAATAAAACATATATATATATAAGCTTTCACATATCAGTTCGGTAAGACA
TTTGACACTCTCTAATTGGATTATCATTGGGGATTTTCCATCGAATCAGG
GAGCTTTCGAATAGTAGAAATTCGTTTATGTGTGTTTCATGTAAAGGATG
GCTTTCAATGTTATCGAATAATGGTGCATATCGAATAGTAGAACGTCGAA
TTAGAGAGCTCTATTGTCAAAACTTTGTTAACTCTATACCTAACTTACTT
CAGTTTACGCAACTCCTCTATCTCCGAATTTTCCAACGACAACAACAACA
ACAACAACCACAACGACTACCACAACCACACCGACTACCACAACCACACC
CACAACAACTCCTTTGACTACTACTACAATAAAATCTACTCAAGAGACCA
CGGCTCCTATAACGACTGCGCCACCAATAGAACCAGTCACCACGACACAG
AAAACAACACTTGTAACCATACCTGTCCAAACTGGCGACCCAACAACCAA
AGACCCTACGATCCCACAAACAACATCCTCTATAAAGGTAACAACAACAC
CTTCAGGGACGGAAGACCCTCCCACAACTTTGCAACCAGATCTCACCACA
TCTCAAACTACTACTGCTGAAAGCAAAAACGAAACGACTCTTGGAGCTCC

Coding sequence (CDS) from alignment at scaffold_421:109373..112872-

>TCONS_00064703 ID=TCONS_00064703|Name=TCONS_00064703|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_421:109373..112872- (Clytia hemisphaerica)
TTTACGCAACTCCTCTATCTCCGAATTTTCCAACGACAACAACAACAACA
ACAACCACAACGACTACCACAACCACACCGACTACCACAACCACACCCAC
AACAACTCCTTTGACTACTACTACAATAAAATCTACTCAAGAGACCACGG
CTCCTATAACGACTGCGCCACCAATAGAACCAGTCACCACGACACAGAAA
ACAACACTTGTAACCATACCTGTCCAAACTGGCGACCCAACAACCAAAGA
CCCTACGATCCCACAAACAACATCCTCTATAAAGGTAACAACAACACCTT
CAGGGACGGAAGACCCTCCCACAACTTTGCAACCAGATCTCACCACATCT
CAAACTACTACTGCTGAAAGCAAAAACGAAACGACTCTTGGAGCTTGGAT
ACTTACTCCAGACCAAGCAGTATGGGAGAATTTGAAAGGGCGTGTTTTAC
GAATTTCAATGAAATGTACGTTAGTTGAACAAAACAATGATGTTTCGATC
AGAAATCTTTGTCTACCAATCAAAGTTACCGGAACACGAGATGGTCAAAT
GNACACCACTCAATACTTGTACGAAACTCGAGATCCTTAAGGTTGATCAA
TGGTCAAATGTAGATTTTTGGCAACCTTCTGGAACGCCAGGACTTATTGG
AACACTTAAAGTTGACAACGGATTTCAGTTAACGTTTACGCAACTCCTCT
ATCTCCGAATTTTCCAACGACAACAACAACAACAACAACCACAACGACTA
CCACAACCACACCGACTACCACAACCACACCCACAACAACTCCTTTGACT
ACTACTACAATAAAATCTACTCAAGAGACCACGGCTCCTATAACGACTGC
GCCACCAATAGAACCAGTCACCACGACACAGAAAACAACACTTGTAACCA
TACCTGTCCAAACTGGCGACCCAACAACCAAAGACCCTACGATCCCACAA
ACAACATCCTCTATAAAGGTAACAACAACACCTTCAGGGACGGAAGACCC
TCCCACAACTTTGCAACCAGATCTCACCACATCTCAAACTACTACTGCTG
AAAGCAAAAACGAAACGACTCTTGGAGCTTGGATACTTACTCCAGACCAA
GCAGTATGGGAGAATTTGAAAGGGCGTGTTTTACGAATTTCAATGAAATG
TACGTTAGTTGAACAAAACAATGATGTTTCGATCAGAAATCTTTGTCTAC
CAATCAAAGTTACCGGAACACGAGATGGTCAAATGNACACCACTCAATAC
TTGTACGAAACTCGAGATCCTTAAGGTTGATCAATGGTCAAATGTAGATT
TTTGGCAACCTTCTGGAACGCCAGGACTTATTGGAACACTTAAAGTTGAC
AACGGATTTCAGTTAACGTTTACGCAACTCCTCTATCTCCGAATTTTCCA
ACGACAACAACAACAACAACAACCACAACGACTACCACAACCACACCGAC
TACCACAACCACACCCACAACAACTCCTTTGACTACTACTACAATAAAAT
CTACTCAAGAGACCACGGCTCCTATAACGACTGCGCCACCAATAGAACCA
GTCACCACGACACAGAAAACAACACTTGTAACCATACCTGTCCAAACTGG
CGACCCAACAACCAAAGACCCTACGATCCCACAAACAACATCCTCTATAA
AGGTAACAACAACACCTTCAGGGACGGAAGACCCTCCCACAACTTTGCAA
CCAGATCTCACCACATCTCAAACTACTACTGCTGAAAGCAAAAACGAAAC
GACTCTTGGAGCTTGGATACTTACTCCAGACCAAGCAGTATGGGAGAATT
TGAAAGGGCGTGTTTTACGAATTTCAATGAAATGTACGTTAGTTGAACAA
AACAATGATGTTTCGATCAGAAATCTTTGTCTACCAATCAAAGTTACCGG
AACACGAGATGGTCAAATGNACACCACTCAATACTTGTACGAAACTCGAG
ATCCTTAAGGTTGATCAATGGTCAAATGTAGATTTTTGGCAACCTTCTGG
AACGCCAGGACTTATTGGAACACTTAAAGTTGACAACGGATTTCAGTTAA
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040586XLOC_040586Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064703-proteinTCONS_00064703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064703-exon-scaffold_421-1575043694:112559..112872TCONS_00064703-exon-scaffold_421-1575043694:112559..112872Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1575043694:111334..111616TCONS_00064703-exon-scaffold_421-1575043694:111334..111616Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1575043694:110618..110762TCONS_00064703-exon-scaffold_421-1575043694:110618..110762Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1575043694:109373..109769TCONS_00064703-exon-scaffold_421-1575043694:109373..109769Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1510915933:112559..112872TCONS_00064703-exon-scaffold_421-1510915933:112559..112872Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1510915933:111334..111616TCONS_00064703-exon-scaffold_421-1510915933:111334..111616Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1510915933:110618..110762TCONS_00064703-exon-scaffold_421-1510915933:110618..110762Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1510915933:109373..109769TCONS_00064703-exon-scaffold_421-1510915933:109373..109769Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1491911889:112559..112872TCONS_00064703-exon-scaffold_421-1491911889:112559..112872Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1491911889:111334..111616TCONS_00064703-exon-scaffold_421-1491911889:111334..111616Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1491911889:110618..110762TCONS_00064703-exon-scaffold_421-1491911889:110618..110762Clytia hemisphaericaexon
TCONS_00064703-exon-scaffold_421-1491911889:109373..109769TCONS_00064703-exon-scaffold_421-1491911889:109373..109769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:109373..112872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0381481	0	0.0863865	0.0422578	0.0514449	0.0813048	0.392363	0.229579	0.160733	0.199094	0.0386491	0.0508129	9.81862	9.22185	0.0649853	0	0.0859129	0.117411	14.9232	13.6216	0.0368838	0.0539718	0.13122	0.159064	1.10586	1.06007	0	0	0	0.0431392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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