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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006287 ID=TCONS_00006287|Name=TCONS_00006287|organism=Clytia hemisphaerica|type=transcript|length=1511bp
CATTGAGATCAGTAGAAACTTGAACATAACGCTGAGACctctctattgtt
ttcaaatgcACTTTATGCATTTTCATTTTACAGTGAATGTTTACAGTTTA
ATTTATTTCTCTATCTTTTAGGAAAGTAAAGAAATGGGATTTTCAGATAT
TTTAGCTTCTTTGACAGACAATCCTTACTTTTCTGCGGGTTTTGGTCTGG
TTGGTGTTGGAAGTGGTCTTGCGGTCCTCCGGAAAGGTGCACAGGCTGGA
TTTGTTTTGTTCAGACGTCATTGCATGATAACATTGGAAGTTTCCAATAA
AGACAAAAGTTTTGATTGGGTCATGCAGTGGATGACACAGAATAAGAAAA
ACCACATGCAGCATCTCAGTGTTTCAACACTTTTCCATCAGCATGATTCA
GGAAAAATCACCACTCACTTCAATTATAATCCTAGCCCTGGTGCTCATTT
TATTGGTTATAAAAATCATTGGTTTAGAGTTGAGAGACAGAGAGATAATG
GAATGAGAGACTTAGCTACTGGAATTCCTTGGGAAACAATAACCTTCACA
TCAGTTGGAAGATCGAAAGCTATTTTTACAGACATTCTAAACGAATCTAA
AGAACTTGCAATATCTAAACAGACAGGAAAAACATTAATGTATATTCCCA
TGGGAGCTGAATGGAGACAGTTTGGTTTTCCAAGACAAAAAAGACCTTTA
GATTCTGTGATTTTGGATGAGAATATTTCTGAAGAAATTGTAGCTGATAT
TatggattttattaaaaatcaagCTTGGTATACCAGAAGAGGAATTCCTT
ACCGTCGAGGTTATCTTTTGCACGGACCACCAGGCTGTGGAAAAAGTAGC
TTCATAATGGCGTTAGCAGGAGAATTACAATATAACATATGCGTCATGAA
TTTGGGTGATCGCACGCTGAGTGATGACCGATTGAATCATTTGATGAGTG
TTGCTCCACAACAGAGTATCATTTTATTAGAAGACATCGATGCTGCGTTC
AGTAGGCGAGACATCGTGGATGGGAATAAAGATGGCGGTGAAAGAGGATA
CTATCCTAACCATGTGACGTTTAGCGGTTTGTTGAATTGTTTGGATGGCG
TCGCATCGACTGAAGAACGCCTCGTTTTCATGACAACCAATCACATTGAC
CGCCTTGATCCCGCCCTCATACGCCCCGGGCGAATCGACGTAAAAAAGGA
GATTGGACATGCTACCCCACATCAGTTATACCTAATGTTTAGACGTTTTT
ATCCTGAATGTTCACACGATGCGGCCGTTCGTTTTAGTGAAGATgcttca
aaaatgaaagacgATATAAGTGTAGCTCAAATTCAAGGCTACTTTTTACT
ACACAAAAATTCTGAACTAGATGCTCTGAAAAATGTGCATTTGTTAGGTG
AATGACGAAGAATGAATATTTATTTTGTATAACTGAATAGActtattttc
ttctttcctCGATGACTCATCCTAAAAATATACAAGTTCTTACTAATTTC
GTTTAAAAAAC Run BLAST on NCBI protein sequence of TCONS_00006287-protein >TCONS_00006287-protein ID=TCONS_00006287-protein|Name=TCONS_00006287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MGFSDILASLTDNPYFSAGFGLVGVGSGLAVLRKGAQAGFVLFRRHCMIT
LEVSNKDKSFDWVMQWMTQNKKNHMQHLSVSTLFHQHDSGKITTHFNYNP
SPGAHFIGYKNHWFRVERQRDNGMRDLATGIPWETITFTSVGRSKAIFTD
ILNESKELAISKQTGKTLMYIPMGAEWRQFGFPRQKRPLDSVILDENISE
EIVADIMDFIKNQAWYTRRGIPYRRGYLLHGPPGCGKSSFIMALAGELQY
NICVMNLGDRTLSDDRLNHLMSVAPQQSIILLEDIDAAFSRRDIVDGNKD
GGERGYYPNHVTFSGLLNCLDGVASTEERLVFMTTNHIDRLDPALIRPGR
IDVKKEIGHATPHQLYLMFRRFYPECSHDAAVRFSEDASKMKDDISVAQI
QGYFLLHKNSELDALKNVHLLGE Run BLAST on NCBI transcript from alignment at sc0000066:163854..167348- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006287 ID=TCONS_00006287|Name=TCONS_00006287|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at sc0000066:163854..167348- (Clytia hemisphaerica)
CATTGAGATCAGTAGAAACTTGAACATAACGCTGAGACCTCTCTATTGTT
TTCAAATGCACTTTATGCATTTTCATTTTACAGTGAATGTTTACAGTTTA
ATTTATTTCTCTATCTTTTAGGAAAGTAAAGAAATGGGATTTTCAGATAT
TTTAGCTTCTTTGACAGACAATCCTTACTTTTCTGCGGGTTTTGGTCTGG
TTGGTGTTGGAAGTGGTCTTGCGGTCCTCCGGAAAGGTGCACAGGCTGGA
TTTGTTTTGTTCAGACGTCATTGCATGATAACATTGGAAGTTTCCAATAA
AGACAAAAGTTTTGATTGGGTCATGCAGTGGATGACACAGAATAAGAAAA
ACCACATGCAGCATCTCAGTGTTTCAACACTTTTCCATCAGCATGATTCA
GGAAAAATCACCACTCACTTCAATTATAATCCTAGCCCTGGTGCTCATTT
TATTGGTTATAAAAATCATTGGTTTAGAGTTGAGAGACAGAGAGATAATG
GAATGAGAGACTTAGCTACTGGAATTCCTTGGGAAACAATAACCTTCACA
TCAGTTGGAAGATCGAAAGCTATTTTTACAGACATTCTAAACGAATCTAA
AGAACTTGCAATATCTAAACAGACAGGAAAAACATTAATGTATATTCCCA
TGGGAGCTGAATGGAGACAGTTTGGTTTTCCAAGACAAAAAAGACCTTTA
GATTCTGTGATTTTGGATGAGAATATTTCTGAAGAAATTGTAGCTGATAT
TATGGATTTTATTAAAAATCAAGCTTGGTATACCAGAAGAGGTTAGGAGA
TATTTTGGTTTTAAAATCTACTCGGATAGTTTGTACTGGCACAAATTGAG
TAAGGTTTTACAAACTGAATTCGGCTCAATTTTCTACCACTGTAGTATAT
TAAGGGTCTGTATAACTGTCGGAAAAATCCCTGTTTTGTAGCTTTGTTAT
AATATGGTTTGAACGGTAAAGAAGAAAGTACTATACAGGTTGACTTGGTG
GTCACGAGATTATTATTAGAAATCTGTAATAACTTGAAAAAAGGTCTAAT
CTTCCATTTTTTTCTCTCTTGATAGGAATTCCTTACCGTCGAGGTTATCT
TTTGCACGGACCACCAGGCTGTGGAAAAAGTAGCTTCATGTACGTTATAC
ATTTTCTGTGGTTTAGAAAACTTCACATAGGCCTTCTCAGTCAAAAGAGC
TGGACGAATAAAAACAATGATTGTTATCCCTGGAAACGATTTTTGTTCAT
CTCAAGGGACTATCAATAGATGAACAGTAAATTCTTGATGACTGTCTTTT
AGTCGTTCAAACGAACTATTTTCTGTCACTACACGGAGCAGTACAGAATT
TAAACGCTTTATTAACGATCCACCTTTGGAAAGATCTGTAACACATTTCG
TAATGTTCATAAAAGTCTCATGTCTTTATTTCAGAATGGCGTTAGCAGGA
GAATTACAATATAACATATGCGTCATGAATTTGGGTGATCGCACGCTGAG
TGATGACCGATTGAATCATTTGATGAGTGTTGCTCCACAACAGAGTATCA
TTTTATTAGAAGACATCGATGCTGCGTTCAGTAGGCGAGACATCGTGGAT
GGGAATAAAGATGGCGGTGAAAGAGGATACTATCCTAACCATGTAAGTTT
TAAATCTTATTCTTTGCAAAGAGTGTTTTAAGAGCACGACAAGATTTTTC
TGGTTTCGTTAGTATACTAAGCTTGTCCCGCCTTTAATTTGATGATAAGG
CTTAAGTTTTTACGTAATCTATAAAACCAAATGAAGTTCAAAAGGTTATC
TTTTAAAGTTTCAAATACCACCGATTGTCAACGCTGCAATGAGAATCTGC
AATTTCGCTTCTTTGCTTTCAAAGTAAATCCCTTTGTGGTTTGGAAGTTA
AGTCGGCAATCTGGTTCTTTCAATTCCCTATACAGGGTGTCCCGAAAAAA
AGTATCGAGTCGTATCACTTCTATAGAAAGAAAGTTCTTGTGTGTGTTTC
ACTAAATTTGCAATGTTTCTCAAAGTTTCTCTCTGTGTCATATTAATTGT
CACGAGACATTTTTTATGAATAACTTTTACAAAAAACAATTCTCAATAAC
TTTAACGTCATGAAAATTGTAAAGAAAGTTAATTCTTATTAATCGTAATG
ACTGTTGTAAAAACAATTATTGTGTTGGTAGATATTTTCTTATATTTTGT
TAAACCATGAAGGTAATAAATATATAGATGGAGAGAAAACGTCTCGGTAA
TGACCTAAATGGTCGTTGAAATCTTTTATAAATCTATTCAAAGCGGCTTT
TCTTTGATGTACCATCATTGGAAGCAAAAAAATACGAAATGTAAATTTAT
AAGAACAGAAAGAGGCTGGTCCGTTGATTTTGAAAAACTTACTTTTGCGA
GAAATCTTAGTTAAAATGCGATTCGAAATAGTTTCAACTGATTTAAGGAT
AAAAGAATATATTAATTTCATAAGGATATATTTTTGGGCTGGCATTTTGT
AAACATTGAGAGTCGCATCACATTATCATTAAAAGTTTCTTATCTTAAAA
TCTTCACGTCTAAGTGAGCAGCGGTTTTCATACTCTGACAAAATGATCGA
TACAAGGTTCCTAATCGTAACACATAATTCTTTTTTAAATCTATCGATGG
CCTTATGGACAGCTTCCCCTAGAAGTTTAGAGTATTGTGCTTATTATGTG
AAGTTTTTTTCAATTTTTCATGACAAGGCTATTATATTTCAATATACTTG
TTAAAAATGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGAATATTCCCACGAGTATACCCAAAATTAATCA
TCTTATTCCCAAAGCAACCAAACAGCTGTTTGCTTCCGATGATAAATCAG
AATAGAACAAAAGGCATTGACTCTCCATCTATCTTTATTACCTTCATGGT
TAAACACACGCAACAGCCTTCTACTCAAAATCATGTTCGAACTCGATATA
TATTTTCGGGACACCCTCTATCAAATTCTTTTTGATAAATCTTTTAGGTG
ACGTTTAGCGGTTTGTTGAATTGTTTGGATGGCGTCGCATCGACTGAAGA
ACGCCTCGTTTTCATGACAACCAATCACATTGACCGCCTTGATCCCGCCC
TCATACGCCCCGGGCGAATCGACGTAAAAAAGGAGATTGGACATGCTACC
CCACATCAGTTATACCTAATGTTTAGACGTTTTTATCCTGAATGTTCACA
CGATGCGGCCGTTCGTTTTAGTGAAGATGCTTCAAAAATGAAAGACGATA
TAAGTGTAGCTCAAATTCAAGGCTACTTTTTACTACACAAAAATTCTGAA
CTAGATGCTCTGAAAAATGTGCATTTGTTAGGTGAATGACGAAGAATGAA
TATTTATTTTGTATAACTGAATAGACTTATTTTCTTCTTTCCTCGATGAC
TCATCCTAAAAATATACAAGTTCTTACTAATTTCGTTTAAAAAAC Coding sequence (CDS) from alignment at sc0000066:163854..167348- >TCONS_00006287 ID=TCONS_00006287|Name=TCONS_00006287|organism=Clytia hemisphaerica|type=CDS|length=5088bp|location=Sequence derived from alignment at sc0000066:163854..167348- (Clytia hemisphaerica)
GTGACGTTTAGCGGTTTGTTGAATTGTTTGGATGGCGTCGCATCGACTGA
AGAACGCCTCGTTTTCATGACAACCAATCACATTGACCGCCTTGATCCCG
CCCTCATACGCCCCGGGCGAATCGACGTAAAAAAGGAGATTGGACATGCT
ACCCCACATCAGTTATACCTAATGTTTAGACGTTTTTATCCTGAATGTTC
ACACGATGCGGCCGTTCGTTTTAGTGAAGATGCTTCAAAAATGAAAGACG
ATATAAGTGTAGCTCAAATTCAAGGCTACTTTTTACTACACAAAAATTCT
GAACTAGATGCTCTGAAAAATGTGCATTTGTTAGGTGAATGAAATGGCGT
TAGCAGGAGAATTACAATATAACATATGCGTCATGAATTTGGGTGATCGC
ACGCTGAGTGATGACCGATTGAATCATTTGATGAGTGTTGCTCCACAACA
GAGTATCATTTTATTAGAAGACATCGATGCTGCGTTCAGTAGGCGAGACA
TCGTGGATGGGAATAAAGATGGCGGTGAAAGAGGATACTATCCTAACCAT
GAATTCCTTACCGTCGAGGTTATCTTTTGCACGGACCACCAGGCTGTGGA
AAAAGTAGCTTCATATGGGATTTTCAGATATTTTAGCTTCTTTGACAGAC
AATCCTTACTTTTCTGCGGGTTTTGGTCTGGTTGGTGTTGGAAGTGGTCT
TGCGGTCCTCCGGAAAGGTGCACAGGCTGGATTTGTTTTGTTCAGACGTC
ATTGCATGATAACATTGGAAGTTTCCAATAAAGACAAAAGTTTTGATTGG
GTCATGCAGTGGATGACACAGAATAAGAAAAACCACATGCAGCATCTCAG
TGTTTCAACACTTTTCCATCAGCATGATTCAGGAAAAATCACCACTCACT
TCAATTATAATCCTAGCCCTGGTGCTCATTTTATTGGTTATAAAAATCAT
TGGTTTAGAGTTGAGAGACAGAGAGATAATGGAATGAGAGACTTAGCTAC
TGGAATTCCTTGGGAAACAATAACCTTCACATCAGTTGGAAGATCGAAAG
CTATTTTTACAGACATTCTAAACGAATCTAAAGAACTTGCAATATCTAAA
CAGACAGGAAAAACATTAATGTATATTCCCATGGGAGCTGAATGGAGACA
GTTTGGTTTTCCAAGACAAAAAAGACCTTTAGATTCTGTGATTTTGGATG
AGAATATTTCTGAAGAAATTGTAGCTGATATTATGGATTTTATTAAAAAT
CAAGCTTGGTATACCAGAAGAGGTGACGTTTAGCGGTTTGTTGAATTGTT
TGGATGGCGTCGCATCGACTGAAGAACGCCTCGTTTTCATGACAACCAAT
CACATTGACCGCCTTGATCCCGCCCTCATACGCCCCGGGCGAATCGACGT
AAAAAAGGAGATTGGACATGCTACCCCACATCAGTTATACCTAATGTTTA
GACGTTTTTATCCTGAATGTTCACACGATGCGGCCGTTCGTTTTAGTGAA
GATGCTTCAAAAATGAAAGACGATATAAGTGTAGCTCAAATTCAAGGCTA
CTTTTTACTACACAAAAATTCTGAACTAGATGCTCTGAAAAATGTGCATT
TGTTAGGTGAATGAAATGGCGTTAGCAGGAGAATTACAATATAACATATG
CGTCATGAATTTGGGTGATCGCACGCTGAGTGATGACCGATTGAATCATT
TGATGAGTGTTGCTCCACAACAGAGTATCATTTTATTAGAAGACATCGAT
GCTGCGTTCAGTAGGCGAGACATCGTGGATGGGAATAAAGATGGCGGTGA
AAGAGGATACTATCCTAACCATGAATTCCTTACCGTCGAGGTTATCTTTT
GCACGGACCACCAGGCTGTGGAAAAAGTAGCTTCATATGGGATTTTCAGA
TATTTTAGCTTCTTTGACAGACAATCCTTACTTTTCTGCGGGTTTTGGTC
TGGTTGGTGTTGGAAGTGGTCTTGCGGTCCTCCGGAAAGGTGCACAGGCT
GGATTTGTTTTGTTCAGACGTCATTGCATGATAACATTGGAAGTTTCCAA
TAAAGACAAAAGTTTTGATTGGGTCATGCAGTGGATGACACAGAATAAGA
AAAACCACATGCAGCATCTCAGTGTTTCAACACTTTTCCATCAGCATGAT
TCAGGAAAAATCACCACTCACTTCAATTATAATCCTAGCCCTGGTGCTCA
TTTTATTGGTTATAAAAATCATTGGTTTAGAGTTGAGAGACAGAGAGATA
ATGGAATGAGAGACTTAGCTACTGGAATTCCTTGGGAAACAATAACCTTC
ACATCAGTTGGAAGATCGAAAGCTATTTTTACAGACATTCTAAACGAATC
TAAAGAACTTGCAATATCTAAACAGACAGGAAAAACATTAATGTATATTC
CCATGGGAGCTGAATGGAGACAGTTTGGTTTTCCAAGACAAAAAAGACCT
TTAGATTCTGTGATTTTGGATGAGAATATTTCTGAAGAAATTGTAGCTGA
TATTATGGATTTTATTAAAAATCAAGCTTGGTATACCAGAAGAGGTGACG
TTTAGCGGTTTGTTGAATTGTTTGGATGGCGTCGCATCGACTGAAGAACG
CCTCGTTTTCATGACAACCAATCACATTGACCGCCTTGATCCCGCCCTCA
TACGCCCCGGGCGAATCGACGTAAAAAAGGAGATTGGACATGCTACCCCA
CATCAGTTATACCTAATGTTTAGACGTTTTTATCCTGAATGTTCACACGA
TGCGGCCGTTCGTTTTAGTGAAGATGCTTCAAAAATGAAAGACGATATAA
GTGTAGCTCAAATTCAAGGCTACTTTTTACTACACAAAAATTCTGAACTA
GATGCTCTGAAAAATGTGCATTTGTTAGGTGAATGAAATGGCGTTAGCAG
GAGAATTACAATATAACATATGCGTCATGAATTTGGGTGATCGCACGCTG
AGTGATGACCGATTGAATCATTTGATGAGTGTTGCTCCACAACAGAGTAT
CATTTTATTAGAAGACATCGATGCTGCGTTCAGTAGGCGAGACATCGTGG
ATGGGAATAAAGATGGCGGTGAAAGAGGATACTATCCTAACCATGAATTC
CTTACCGTCGAGGTTATCTTTTGCACGGACCACCAGGCTGTGGAAAAAGT
AGCTTCATATGGGATTTTCAGATATTTTAGCTTCTTTGACAGACAATCCT
TACTTTTCTGCGGGTTTTGGTCTGGTTGGTGTTGGAAGTGGTCTTGCGGT
CCTCCGGAAAGGTGCACAGGCTGGATTTGTTTTGTTCAGACGTCATTGCA
TGATAACATTGGAAGTTTCCAATAAAGACAAAAGTTTTGATTGGGTCATG
CAGTGGATGACACAGAATAAGAAAAACCACATGCAGCATCTCAGTGTTTC
AACACTTTTCCATCAGCATGATTCAGGAAAAATCACCACTCACTTCAATT
ATAATCCTAGCCCTGGTGCTCATTTTATTGGTTATAAAAATCATTGGTTT
AGAGTTGAGAGACAGAGAGATAATGGAATGAGAGACTTAGCTACTGGAAT
TCCTTGGGAAACAATAACCTTCACATCAGTTGGAAGATCGAAAGCTATTT
TTACAGACATTCTAAACGAATCTAAAGAACTTGCAATATCTAAACAGACA
GGAAAAACATTAATGTATATTCCCATGGGAGCTGAATGGAGACAGTTTGG
TTTTCCAAGACAAAAAAGACCTTTAGATTCTGTGATTTTGGATGAGAATA
TTTCTGAAGAAATTGTAGCTGATATTATGGATTTTATTAAAAATCAAGCT
TGGTATACCAGAAGAGGTGACGTTTAGCGGTTTGTTGAATTGTTTGGATG
GCGTCGCATCGACTGAAGAACGCCTCGTTTTCATGACAACCAATCACATT
GACCGCCTTGATCCCGCCCTCATACGCCCCGGGCGAATCGACGTAAAAAA
GGAGATTGGACATGCTACCCCACATCAGTTATACCTAATGTTTAGACGTT
TTTATCCTGAATGTTCACACGATGCGGCCGTTCGTTTTAGTGAAGATGCT
TCAAAAATGAAAGACGATATAAGTGTAGCTCAAATTCAAGGCTACTTTTT
ACTACACAAAAATTCTGAACTAGATGCTCTGAAAAATGTGCATTTGTTAG
GTGAATGAAATGGCGTTAGCAGGAGAATTACAATATAACATATGCGTCAT
GAATTTGGGTGATCGCACGCTGAGTGATGACCGATTGAATCATTTGATGA
GTGTTGCTCCACAACAGAGTATCATTTTATTAGAAGACATCGATGCTGCG
TTCAGTAGGCGAGACATCGTGGATGGGAATAAAGATGGCGGTGAAAGAGG
ATACTATCCTAACCATGAATTCCTTACCGTCGAGGTTATCTTTTGCACGG
ACCACCAGGCTGTGGAAAAAGTAGCTTCATATGGGATTTTCAGATATTTT
AGCTTCTTTGACAGACAATCCTTACTTTTCTGCGGGTTTTGGTCTGGTTG
GTGTTGGAAGTGGTCTTGCGGTCCTCCGGAAAGGTGCACAGGCTGGATTT
GTTTTGTTCAGACGTCATTGCATGATAACATTGGAAGTTTCCAATAAAGA
CAAAAGTTTTGATTGGGTCATGCAGTGGATGACACAGAATAAGAAAAACC
ACATGCAGCATCTCAGTGTTTCAACACTTTTCCATCAGCATGATTCAGGA
AAAATCACCACTCACTTCAATTATAATCCTAGCCCTGGTGCTCATTTTAT
TGGTTATAAAAATCATTGGTTTAGAGTTGAGAGACAGAGAGATAATGGAA
TGAGAGACTTAGCTACTGGAATTCCTTGGGAAACAATAACCTTCACATCA
GTTGGAAGATCGAAAGCTATTTTTACAGACATTCTAAACGAATCTAAAGA
ACTTGCAATATCTAAACAGACAGGAAAAACATTAATGTATATTCCCATGG
GAGCTGAATGGAGACAGTTTGGTTTTCCAAGACAAAAAAGACCTTTAGAT
TCTGTGATTTTGGATGAGAATATTTCTGAAGAAATTGTAGCTGATATTAT
GGATTTTATTAAAAATCAAGCTTGGTATACCAGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006287-exon-sc0000066-1575043694:166558..167348 | TCONS_00006287-exon-sc0000066-1575043694:166558..167348 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1575043694:166210..166273 | TCONS_00006287-exon-sc0000066-1575043694:166210..166273 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1575043694:165707..165914 | TCONS_00006287-exon-sc0000066-1575043694:165707..165914 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1575043694:163854..164301 | TCONS_00006287-exon-sc0000066-1575043694:163854..164301 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1510915933:166558..167348 | TCONS_00006287-exon-sc0000066-1510915933:166558..167348 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1510915933:166210..166273 | TCONS_00006287-exon-sc0000066-1510915933:166210..166273 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1510915933:165707..165914 | TCONS_00006287-exon-sc0000066-1510915933:165707..165914 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1510915933:163854..164301 | TCONS_00006287-exon-sc0000066-1510915933:163854..164301 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1491911889:166558..167348 | TCONS_00006287-exon-sc0000066-1491911889:166558..167348 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1491911889:166210..166273 | TCONS_00006287-exon-sc0000066-1491911889:166210..166273 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1491911889:165707..165914 | TCONS_00006287-exon-sc0000066-1491911889:165707..165914 | Clytia hemisphaerica | exon |
| TCONS_00006287-exon-sc0000066-1491911889:163854..164301 | TCONS_00006287-exon-sc0000066-1491911889:163854..164301 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:163854..167348 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0034551 | mitochondrial respiratory chain complex III assembly |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0034551 |
mitochondrial respiratory chain complex III assembly |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00006287 vs. Swiss-Prot (Human)
Match: BCS1 (Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1) HSP 1 Score: 462.611 bits (1189), Expect = 4.672e-159 Identity = 239/423 (56.50%), Postives = 316/423 (74.70%), Query Frame = 2
Query: 134 MGFSDILASLTDNPYXXXXXXXXXXXXXXXXXRKGAQAGFVLFRRHCMITLEVSNKDKSFDWVMQWMTQNKKNHMQHLSVSTLFHQHDSGKITTHFNYNPSPGAHFIGYKNHWFRVERQRDNGMRDLATGIPWETITFTSVGRSKAIFTDILNESKELAISKQTGKTLMYIPMGAEWRQFGFPRQKRPLDSVILDENISEEIVADIMDFIKNQAWYTRRGIPYRRGYLLHGPPGCGKSSFIMALAGELQYNICVMNLGDRTLSDDRLNHLMSVAPQQSIILLEDIDAAFSRRDIVDGN--KDGGERGYYPNHVTFSGLLNCLDGVASTEERLVFMTTNHIDRLDPALIRPGRIDVKKEIGHATPHQLYLMFRRFYPECSHDAAVRFSEDASKMKDDISVAQIQGYFLLHKNSELDALKNVHLL 1396
M SD + +L DNPYF AGFGLVGVG+ LA+ RKG Q G V FRRH MITLEV +D+S+ W++ W+T++ QHLSV T + QH+SG+I+T F + PSPG HFI Y+ W RVER R+ M DL TG PWE++TFT++G + +F +IL E++ELA+ ++ GKT+MY +G+EWR FG+PR++RPL+SV+L + +++ IV D+ +FI N WYT RGIPYRRGYLL+GPPGCGKSSFI ALAGEL+++IC+++L D +LSDDRLNHL+SVAPQQS++LLED+DAAF RD+ N K G +TFSGLLN LDGVASTE R+VFMTTNH+DRLDPALIRPGR+D+K+ +G+ + QL MF+RFYP + A F+E + + IS AQ+QGYF+L+KN + A+ N L
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGVQLGLVAFRRHYMITLEVPARDRSYAWLLSWLTRHS-TRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYRGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFGYPRRRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGL-----GRLTFSGLLNALDGVASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLRATNQISPAQVQGYFMLYKNDPVGAIHNAESL 417
The following BLAST results are available for this feature:
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