TCONS_00062308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062308
Unique NameTCONS_00062308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062308 ID=TCONS_00062308|Name=TCONS_00062308|organism=Clytia hemisphaerica|type=transcript|length=634bp
GTTAAGTTAAATTCAAGCCAGTTCAATGGTAATAGGTTCATGTTTGGTAG
AGTcaataaatttcttaaaatccgATGATGTCATTCCAAGAGTCGCCGTA
TTTTCCATTGGATGGGAATAAACCATTCGATTCTCAGCTAACAAATCAGA
ATCCacaatcaatcgaacgtcaCNGAATAAACCATTCGATTCTCAGCTAA
CAAATCAGAATCCACGATCAATCGAACGTCATTATTCGAATCATTAAAAA
TAGCCAATGGGGTTGCACAACCTTGAGCTACGCCcaatttttcaatcatg
attGCTTCGTCAGCAAATCTTAAGCCCCCTGGAGCACCAACTGTCTTAGC
TACTTCAGCTAATTTGACTTCTTTCGAATGAACAGCTGTCAACAGccata
atttctttttcttgtctTTCAAGAACAAATTCTTGGTGACAAGTCCATCT
TCGATACCGGTTAAATGTTTCATCATCTCGTCAACCGTAAAAACAGCCGG
GTGTTCAATCACTTTATGTTGTATGTTGTTGTTGGTTAGAATTTCCATTA
ATGCATTGCGTCCTCGTCCAGCAgccattttatttttctatttaaatttt
tatttcttattaTTTTCACTGTAGAATAAACAAA
Run BLAST on NCBI

protein sequence of TCONS_00062308-protein

>TCONS_00062308-protein ID=TCONS_00062308-protein|Name=TCONS_00062308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MAAGRGRNALMEILTNNNIQHKVIEHPAVFTVDEMMKHLTGIEDGLVTKN
LFLKDKKKKLWLLTAVHSKEVKLAEVAKTVGAPGGLRFADEAIMIEKLGV
AQGCATPLAIFNDSNNDVRLIVDSDLLAENRMVYXVTFD
Run BLAST on NCBI

transcript from alignment at scaffold_362:387553..388186

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062308 ID=TCONS_00062308|Name=TCONS_00062308|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at scaffold_362:387553..388186 (Clytia hemisphaerica)
TTTGTTTATTCTACAGTGAAAAtaataagaaataaaaatttaaatagaaa
aataaaatggcTGCTGGACGAGGACGCAATGCATTAATGGAAATTCTAAC
CAACAACAACATACAACATAAAGTGATTGAACACCCGGCTGTTTTTACGG
TTGACGAGATGATGAAACATTTAACCGGTATCGAAGATGGACTTGTCACC
AAGAATTTGTTCTTGAAagacaagaaaaagaaattatggCTGTTGACAGC
TGTTCATTCGAAAGAAGTCAAATTAGCTGAAGTAGCTAAGACAGTTGGTG
CTCCAGGGGGCTTAAGATTTGCTGACGAAGCaatcatgattgaaaaattg
GGCGTAGCTCAAGGTTGTGCAACCCCATTGGCTATTTTTAATGATTCGAA
TAATGACGTTCGATTGATCGTGGATTCTGATTTGTTAGCTGAGAATCGAA
TGGTTTATTCNGtgacgttcgattgattgtGGATTCTGATTTGTTAGCTG
AGAATCGAATGGTTTATTCCCATCCAATGGAAAATACGGCGACTCTTGGA
ATGACATCATcggattttaagaaatttattgACTCTACCAAACATGAACC
TATTACCATTGAACTGGCTTGAATTTAACTTAAC

Coding sequence (CDS) from alignment at scaffold_362:387553..388186

>TCONS_00062308 ID=TCONS_00062308|Name=TCONS_00062308|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_362:387553..388186 (Clytia hemisphaerica)
atggcTGCTGGACGAGGACGCAATGCATTAATGGAAATTCTAACCAACAA
CAACATACAACATAAAGTGATTGAACACCCGGCTGTTTTTACGGTTGACG
AGATGATGAAACATTTAACCGGTATCGAAGATGGACTTGTCACCAAGAAT
TTGTTCTTGAAagacaagaaaaagaaattatggCTGTTGACAGCTGTTCA
TTCGAAAGAAGTCAAATTAGCTGAAGTAGCTAAGACAGTTGGTGCTCCAG
GGGGCTTAAGATTTGCTGACGAAGCaatcatgattgaaaaattgGGCGTA
GCTCAAGGTTGTGCAACCCCATTGGCTATTTTTAATGATTCGAATAATGA
CGTTCGATTGATCGTGGATTCTGATTTGTTAGCTGAGAATCGAATGGTTT
ATTCNGtgacgttcgattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039047XLOC_039047Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062308-proteinTCONS_00062308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062308-exon-scaffold_362-1491911889:387553..388186TCONS_00062308-exon-scaffold_362-1491911889:387553..388186Clytia hemisphaericaexon
TCONS_00062308-exon-scaffold_362-1510915933:387553..388186TCONS_00062308-exon-scaffold_362-1510915933:387553..388186Clytia hemisphaericaexon
TCONS_00062308-exon-scaffold_362-1575043694:387553..388186TCONS_00062308-exon-scaffold_362-1575043694:387553..388186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:387553..388186 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9631	24.828	32.1358	30.2377	70.2458	55.7761	58.0617	63.7008	41.1515	44.9606	26.8944	25.1846	13.4909	7.78355	17.3962	26.0447	54.7073	36.7399	5.23554	9.28579	20.2583	21.8491	53.2165	49.9478	11.0239	13.0382	38.8032	24.0653	33.0771	34.5499
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007214YbaK/aa-tRNA-synth-assoc-dom
Vocabulary: Molecular Function
TermDefinition
GO:0002161aminoacyl-tRNA editing activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0002161 aminoacyl-tRNA editing activity
Blast
[Close]
BLAST of TCONS_00062308 vs. Swiss-Prot (Human)
Match: PRXD1 (Putative prolyl-tRNA synthetase associated domain-containing protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 9.634e-22
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = -3 
Query:  198 MAAGRGRNALMEILTNNNIQHKVIEHPAVFTVDEMMKHLTGIEDGLVTXXXXXXXXXXXXXXLTAVHSKEVKLAEVAKTVG-APGGLRFADEAIMIEKLGVAQGCATPLAIFNDSNNDVRLIVDSDLL 578
            MA      AL + L    I  +V+EHP VFTV+EMM H+  ++            KKK  WL+T +H +++ L E+AK +G   G LRFADE  M+EKL V QGCATPLA+F D   DV+ ++DS  L
Sbjct:    1 MAGAELGAALEQRLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQINLNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDG-GDVKFVLDSAFL 127
The following BLAST results are available for this feature:
BLAST of TCONS_00062308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRXD19.634e-2244.53Putative prolyl-tRNA synthetase associated domain-... [more]
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