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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061910 ID=TCONS_00061910|Name=TCONS_00061910|organism=Clytia hemisphaerica|type=transcript|length=1655bpRun BLAST on NCBI protein sequence of TCONS_00061910-protein >TCONS_00061910-protein ID=TCONS_00061910-protein|Name=TCONS_00061910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp MAFACQRNSYLKELVSKVVTCTQVKNGYEVILNDTVFFPEGGGQPDDHGKRun BLAST on NCBI transcript from alignment at scaffold_361:871334..877845+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061910 ID=TCONS_00061910|Name=TCONS_00061910|organism=Clytia hemisphaerica|type=transcript|length=6512bp|location=Sequence derived from alignment at scaffold_361:871334..877845+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:871334..877845+ >TCONS_00061910 ID=TCONS_00061910|Name=TCONS_00061910|organism=Clytia hemisphaerica|type=CDS|length=15522bp|location=Sequence derived from alignment at scaffold_361:871334..877845+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061910 vs. Swiss-Prot (Human)
Match: AASD1 (Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens GN=AARSD1 PE=1 SV=2) HSP 1 Score: 311.612 bits (797), Expect = 1.167e-99 Identity = 177/409 (43.28%), Postives = 259/409 (63.33%), Query Frame = 1
Query: 187 MAFACQRNSYLKELVSKVVTCT-------------QVKNGYEVILNDTVFFPEGGGQPDDHGKIGDVNVSRVIRRGPKAIHVTDGPLREGDELKCSIDWKRRFDHMQQHSGQHLLSAVLDAKFGFKTTSWDLGKSVSHVELNTPKISSKQMSEVEDECNERIRNAKNVQVHYLTKEQAMDLEEVKTRGLPDDVIEPIRVIEIHGVEKNMCCGTHVENLSELQMIKLLHTE-SMRGGIRVFFLVGDRVLNKVAIGYDVEKKLTKLLSCGIDEHSDSVEKLKGNLRVSQKSNKNYLKELGKFEAKEHSLKAKET--SYIFHFREDADMDYIFSFLNGLAEE--SKDWIVFVSAGTVKNGGQFVLRGPEQKIAKISSEIVKTIEXXXXXXXXXXXXXANSFKKVDEVENIIQ 1359
MAF CQR+SY +E + VV+C +V +G++V+L DTV FPEGGGQPDD G I D++V RV RRG +A H T PL G ++ +DW+RRFDHMQQHSGQHL++AV D F KTTSW+LG+ S +EL+TP ++++Q++ +E NE+IR+ V V L+ + ++E+V RGLPDD PIRV+ I GV+ NMCCGTHV NLS+LQ+IK+L TE + + FL G+RVL + + EK LT LL CG ++H ++V+KL+ + ++ QK+N N L++L A HSL+ + R++ D + F+N +A E S++ ++F++ G K GG F+L GP + + + + +EGKG GKKG+FQGKA + E + ++Q
Sbjct: 1 MAFWCQRDSYAREFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDP-EVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIA--HSLRNSPDWGGVVILHRKEGDSE----FMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVETLGPRVAEVLEGKGAGKKGRFQGKATKMSRRMEAQALLQ 402 The following BLAST results are available for this feature:
BLAST of TCONS_00061910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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