TCONS_00061910-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061910-protein
Unique NameTCONS_00061910-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061910-protein ID=TCONS_00061910-protein|Name=TCONS_00061910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MAFACQRNSYLKELVSKVVTCTQVKNGYEVILNDTVFFPEGGGQPDDHGK
IGDVNVSRVIRRGPKAIHVTDGPLREGDELKCSIDWKRRFDHMQQHSGQH
LLSAVLDAKFGFKTTSWDLGKSVSHVELNTPKISSKQMSEVEDECNERIR
NAKNVQVHYLTKEQAMDLEEVKTRGLPDDVIEPIRVIEIHGVEKNMCCGT
HVENLSELQMIKLLHTESMRGGIRVFFLVGDRVLNKVAIGYDVEKKLTKL
LSCGIDEHSDSVEKLKGNLRVSQKSNKNYLKELGKFEAKEHSLKAKETSY
IFHFREDADMDYIFSFLNGLAEESKDWIVFVSAGTVKNGGQFVLRGPEQK
IAKISSEIVKTIEGKGGGKKGQFQGKANSFKKVDEVENIIQGAVNES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038821XLOC_038821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061910TCONS_00061910Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012947tRNA_SAD
IPR018164Ala-tRNA-synth_IIc_N
IPR018165Ala-tRNA-synth_IIc_core
IPR009000Transl_B-barrel
IPR018163Thr/Ala-tRNA-synth_IIc_edit
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016876ligase activity, forming aminoacyl-tRNA and related compounds
GO:0000166nucleotide binding
GO:0004813alanine-tRNA ligase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006419alanyl-tRNA aminoacylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006419 alanyl-tRNA aminoacylation
biological_process GO:0043039 tRNA aminoacylation
molecular_function GO:0004813 alanine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012947Threonyl/alanyl tRNA synthetase, SADSMARTSM00863tRNA_SAD_4coord: 184..226
e-value: 2.9E-8
score: 43.5
IPR012947Threonyl/alanyl tRNA synthetase, SADPFAMPF07973tRNA_SADcoord: 184..224
e-value: 1.4E-8
score: 34.6
NoneNo IPR availableGENE3D3.30.980.10coord: 85..239
e-value: 1.6E-35
score: 121.9
IPR018164Alanyl-tRNA synthetase, class IIc, N-terminalPFAMPF01411tRNA-synt_2ccoord: 24..88
e-value: 2.3E-7
score: 29.7
IPR018165Alanyl-tRNA synthetase, class IIc, core domainPROSITEPS50860AA_TRNA_LIGASE_II_ALAcoord: 1..224
score: 15.058
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 2..83
IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domainSUPERFAMILY55186ThrRS/AlaRS common domaincoord: 85..230

Blast
[Close]
BLAST of TCONS_00061910-protein vs. Swiss-Prot (Human)
Match: AASD1 (Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens GN=AARSD1 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 7.792e-115
Identity = 177/409 (43.28%), Postives = 259/409 (63.33%), Query Frame = 0 
Query:    1 MAFACQRNSYLKELVSKVVTCT-------------QVKNGYEVILNDTVFFPEGGGQPDDHGKIGDVNVSRVIRRGPKAIHVTDGPLREGDELKCSIDWKRRFDHMQQHSGQHLLSAVLDAKFGFKTTSWDLGKSVSHVELNTPKISSKQMSEVEDECNERIRNAKNVQVHYLTKEQAMDLEEVKTRGLPDDVIEPIRVIEIHGVEKNMCCGTHVENLSELQMIKLLHTE-SMRGGIRVFFLVGDRVLNKVAIGYDVEKKLTKLLSCGIDEHSDSVEKLKGNLRVSQKSNKNYLKELGKFEAKEHSLKAKET--SYIFHFREDADMDYIFSFLNGLAEE--SKDWIVFVSAGTVKNGGQFVLRGPEQKIAKISSEIVKTIEGKGGGKKGQFQGKANSFKKVDEVENIIQ 391
            MAF CQR+SY +E  + VV+C              +V +G++V+L DTV FPEGGGQPDD G I D++V RV RRG +A H T  PL  G ++   +DW+RRFDHMQQHSGQHL++AV D  F  KTTSW+LG+  S +EL+TP ++++Q++ +E   NE+IR+   V V  L+ +   ++E+V  RGLPDD   PIRV+ I GV+ NMCCGTHV NLS+LQ+IK+L TE   +    + FL G+RVL  +   +  EK LT LL CG ++H ++V+KL+ + ++ QK+N N L++L    A  HSL+        +   R++ D +    F+N +A E  S++ ++F++ G  K GG F+L GP   +  +   + + +EGKG GKKG+FQGKA    +  E + ++Q
Sbjct:    1 MAFWCQRDSYAREFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDP-EVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIA--HSLRNSPDWGGVVILHRKEGDSE----FMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVETLGPRVAEVLEGKGAGKKGRFQGKATKMSRRMEAQALLQ 402
The following BLAST results are available for this feature:
BLAST of TCONS_00061910-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AASD17.792e-11543.28Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens... [more]
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