TCONS_00006071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006071
Unique NameTCONS_00006071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006071 ID=TCONS_00006071|Name=TCONS_00006071|organism=Clytia hemisphaerica|type=transcript|length=1540bp
CTCCACTAACCGTCGACTCTGCTGAAAATATACCTCAAACACCGGAAATG
AATGTGGAACTACCCGATACTGCGGATACACCGGACTCCAGAACAAACAT
TCCGCAAAGTCACGGCAAGACAATCGCCAATAAACGAAAACATATCCaCC
ACAAACCAGAAGCCACCAAAAATGCAGAAGCAGCGAAAAAACAAGATATG
TCATTCAATGATGAGATGCCAGGACAAGAAATGAACGAGGGACCAGTTGG
TAAAGTCCAAAATGCTGCTGGCGTCGAAGGTTTGGGCGGTGAGATGAATG
GTATCCCAACCGGTATGGGCGCAGGGGCGGAACCATTGGGCgcatttgaa
aatgaagacacACCACCTGGAACAGAAACACAACCTCAAAGTTTGGGCGA
AGACCAACCCAATGGACTTTCGGAATCAAACCTTGGTGAACAAGGAGGAG
CTGGAGAAATGACGAACGAagcttcagtgaaaatgaaagcacCCGCAATT
TCTATGTCTCACTCATTAGACGATCTCGATAATTCAGTCAATATCCAAGG
CGATGGAGAAATCGGAAAATATGTTCGTAACTCCCGACAAGGAGGTATGG
GAACAGGTAGCGAGAGTATGATTGGTTTGGAAGCGAAAGACCCTCCTTTC
ACAGGACATGGCCCTGAGGATGAGGAAGACGAGACTCCATCAAGAAGACA
TCTAGTTAAACAAAAGCCCAAACGCAAGAAGAATTCCtggaaaaaacctt
ttaaacAATTACAAAAGAAACAACAATAAGACACGTTTTACACCAAGGGT
TTTTATAACCTCAACAGTAAACTTATATTCAATTTTAGCTGACTAATTTC
GCTTGTATAATGCAATAGatctttaactttttgttaattttttgtctgaA
AGATAACACATTTCTTCCTATGGAGGAACTATTACACACCGTAAATTTAT
ATAATGTCGAAAACTCCTACCAGTTCCGTCACTCTTCCTTGGACTTGGAG
AGTTTATTTTTTGATTCTGCTTCACACATTATCTTCATTCCTTCTCAAAG
TGATACTTCGGCAAGTTGAAATGTTAGAAGCTGTGTTTCGATCTTTTGTT
CCACCTTTAAAAAGCCTCCAGACTTTCTTGTTGCATAGATACAAAATGCA
AACGAAAATTCCCTTTAAGCTTCTCACCAAGACAAacagaaatgaaaaaa
tcaaattcactgTCATCAATTCTTTACCTGGTATTTGTACATAGCCAATG
ATATCAATCAAACCCAACCCAATAATCAACTTTAAAGCAATTCTCACTAA
GTCAGCATTGGCTTGATCGGACTGtaaagtttttcttgtttttttcttaG
CCAAGTGTATTTTGAGCAGAGTTTTGGCTAAGGCCAGAATGGATATCAAA
TGCATGACAACCATTGGAGTGATAACAGACCACACCCTTGTGGGGGTATG
TGTGACCCAGCACATTTTATCATAACCAACGTTGACATTGCCAGCCTCGT
TCAAAATGACTGCAGGGAGTACGAAAAACAAAGGTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000062:430112..436266-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006071 ID=TCONS_00006071|Name=TCONS_00006071|organism=Clytia hemisphaerica|type=transcript|length=6155bp|location=Sequence derived from alignment at sc0000062:430112..436266- (Clytia hemisphaerica)
CTCCACTAACCGTCGACTCTGCTGAAAATATACCTCAAACACCGGAAATG
AATGTGGAACTACCCGATACTGCGGATACACCGGACTCCAGAACAAACAT
TCCGCAAAGTAAGATTCAGACTTTATTCCTGAAACAGAAAAATGTGAACA
ATAGACTGCAAACACATGTAACTGAGAACAATAATAAACGAACAGAAATC
TTCAAAAGAATGCGAACACCCGATACCGTAGATACACCGACCATGGACGT
TGATACCCCGAACACACCGGACACTCCCGAATTCGACGTAAATGTAAACT
CGACAAAGAATACTCCAGACAGTACCGGATTTCAATTTTCCGGTGATGAT
GACCCAAGTTATACGGAAGTTGATAACGGAAAATTAAGACCAATCCATTT
TATAGCGAACCCGTTTTCTAACGTAACTGAAACGACAGGAGCGGTTTCCG
TGCGCTGGAAACCGTACAATAAGAACACGTCGCGTATCACTATTCATGGT
GCACGGATGCACGATGAAATTGAAGCCAAAACACAAGAAGAAGATGCCGA
GAATAAAAATATGATAGGAGAAGAAACTCAAATCTCCCTTGATAAAGAAA
ATGCTAAACTTTTCAAAAACTCTACTTTTGATAATACAATGTTGGATTAT
TTTTTCAACCAATATAACAAAAAGTCCTTTTTACCTAAGCTTCTCTCAAA
GAACAAATCTACTACTTCTAAATCTACGCTATTTTTGAATATGAAGTTTT
AATATTTCTAACAAAATATCAATATATCTTTTTGGTAAGCTTTTTAAATT
TTTAAATTTTATCGGACATAAGCTCTCTGCTACGTCGACCAGTTATAGAT
ACTTCGGCCTTGATTTACTACAGTATTAACAAGTTTACGTAACATCTTTA
CTTTAACATTGATTTAATATTTAGGAGTTCACGTAACACATACAAAGATA
CGTTAAAATACCTTAAAATGCGCGTTATTCAAATCTTTAAAATCATTTTG
ATCCCATTATTAATTAGACTAGCAAACTAGTCTGTTAATTAATCATGTCA
GAGGGTGGGAACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGCTGCGT
AGGAGAGCGAACAAAAGTTGGTGAGAGGCTGCTGATTAAGCTTTCAGCCC
TTGCCGCCGACAAAATTTCTTCTTACGCTTACCTAACTCCTACGCTCACT
TTTCCCACGTGATACCGTTCCAGCCCGACTGGCGTGCCAGTCTAATTATT
AATATGCTGGTCCACTCTCTTTTTTCAGGTCACGGCAAGACAATCGCCAA
TAAACGAAAACATATCCGTAAGTTAGTACCCATTCCCAATTTTTCACCAT
TTGAAAACATTTTGGTATTTCACAACCATTCAGGATATCAATTTTTCTGA
TTCTTTAAAAAAATAAAAGTAAATTTTCCCACTATTTCACTTTATCTTGA
GTTATAAAGCAAAAAAGTTTTGTTTTTTACCAAAGCTGAGGCTACAGGCT
GGTGTTTTTAGGCGATTTGAACTGATTTTTTTGAAGCCACTTTTGTAATT
TTTTAAGCGACATTTTTCTAGCGTTATAGTGTACTTACTGATAGCAGAAA
AATTTGACGTGCTACATTTTACAATTTTTCATGCGTTTTTACAACGCAAT
GTGAATGGCATTGCAGCCTGTAAAATCGTATAAGTGTAGTCTTATTCTTA
TAGTATCCTTATCATTTTATTTTGTAGACCACAAACCAGAAGCCACCAAA
AATGCAGAAGCAGCGAAAAAACAAGGTACACTAAATTCTTATGTTGTTAA
TGTTAATATACTCAACCTCTTTATAATGAATTGCTTTAAGATTTATATCT
GTTGGTGCTTTTAAGACTTATCTGTTCTTCATCTGTTGGGAGTATTTTTT
AATTTCAAGAAATATTCGATTCCCAACTATCTTTCCTTTGTATCCATGAA
TTTCTATTACTGTAAGCTTCCCTATTCTTAACAGTCAAGATTACGTCATT
CACAAACAGGATGAACTGTTTTAGGGAACATAAGCTTCCATCCAAATTCT
TTCCAAACACTGTTTCAAATAGGATAAATGTCTTGTGACTTATGTATATC
ATGATATAATTTTTCTTGTGGTAATGATTATCTGTTTATTACTTTCTCTA
GATATGTCATTCAATGATGAGATGCCAGGACAAGAAATGAACGAGGGACC
AGTTGGTGAGTTAGTGAAGATTATATATAACAATGATGCTGGCTCGTTTT
GGACCTTCTATTACATTACTACACTCATTGAGTTTAAAGGGGTAGAAAGT
CTTTCACAAGCGAGAAAAAGTGAAGTCTTAAGATCAACGCTGCATTTAGA
ATGAGGGATTGAATCTAGTGCTTTTTTGTTTTCATTCAAGCACGCATTTT
TTGAAATTTGGCGATAAATCCGGCATTTCTGTCATCCAAGAGTTTCGCAT
CCATTGCGGCTTAAAACTCAATTACGCCTGAGAATGTTTTATTAAGGTTG
ACATGTTTTGGACATGTTTTTCCATTCTTAATTTAAGTTATCATATAGAT
TTTTGATTAATTACTTTCTAGGTAAAGTCCAAAATGCTGCTGGCGTCGAA
GGTTTGGGCGGTGAGATGAATGGTATCCCAACCGGTATGGGCGCAGGGGC
GGAACCATTGGGCGCATTTGAAAATGAAGACACACCACCTGGAACAGAAA
CACAACCTCAAAGTTTGGGCGAAGACCAACGTACGTTATTTTATTTAACC
TTGATAAGATATACTTTCTAACTCTATGGCATGGGGAACAGGGGGGTCGA
TAGTAAAATCTCAGACATAATGACGTTTACTACGGTGGTGGTGTGACGAG
AAATAGAAAAAAACTTTTACTACCCAGGGTAGTTAAATACTAAAATGGGT
GGTATCTATGGGTTAAATGTTGAAAAAATTTACTACCTGGGTAGTTAAAA
CTGGTAAAATTAGCAAATTTTAGCTATTTTTGTAATTCTTTTAATTTTTT
GGATGGCTTTACTGAAAAAATCTTCTGTTGGAAAGTTGTTTGCTGCAAAC
CAAAAATTCTCGAAATTTTTTGTCAATATAAAAAAGACTTTAATTCTATG
GGCAAAACATTAATTTTTGCATTAAGTGAAAAATGTGTCACAGAATCATT
TTTTAGCTTTTTTTGTAAAATCAAGCCGAAAAGCAACCGAAAAATAGGTG
GTCTCCATGACAAATTGTCCCGAAAACTTTTACTACCAGGGTAGTAAAAT
ACCTCTTCCAAGAGTCTGGGTGGTGGTATGTAAAAATTCATAAAAATCCT
TTTACTACTCATATATGTCTGAGATTTTACTATCGACCACCCCCCCTGTG
AGGGATATTATTGAAATTGAAAAGTCAAAACAAAGAAAAGCCAAGGTAGA
GTTTAAAATTTATAACAGAGTGTGTTTCTTTGAGCCATAACCTTATAAGG
AAATGAATTTTTGCCCCCCCCCCCCTACGCCTCTTAAGATCCACCATTTC
AATAATTCACGGTAAAGAGATGAAATAAAAATAGATTTTCACCTTCAATT
CGCCCGATAGTCACTATAGTCATTTGTAGAATTATCCTTATTGTGAATCA
CACTCTCATTTTATATTCAGCCAATGGACTTTCGGAATCAAACCTTGGTG
AACAAGGAGGAGCTGGAGAAATGACGAACGAAGCTTCAGTGAAAATGAAA
GCACCCGCAATTTCTATGTCTCACTCATTAGACGATCTCGATAATTCAGT
CAATATCCAAGGCGATGGAGAAATCGGTGAGTACTTGCTGCCATTGACTT
TTGATCTGTACAAACCAACATACCCTCTTATTGGGATGATGAAATGATCA
AGGGAAAAGCTTTATAAGATTACAAGCAAGTGGAATAATTTTCTGTTTTG
AACACTATAAATTTAAACAATGTTCACTAGTTTCCAAACTTGTTAAGACC
TAGGTAATCTTGATATCCAGGCTGTATACTTTTTTTTACTTTTTTTAATG
TTTCTAGTTTACCGCCTCGTCTTCCTTAAAGCAAGCTATATTCCAATCAG
AAGGTTATGCATAAATTAAAAATCAGCCTACACTGTGTTCGCCAGCATCT
AGGAAACATTTAAGTAAGAAAATAAACTACAGCTTTGATAACCAGGCTAG
GATCTCAGGAATAAAATCTATTTACTCTGAATATACGAATTAATATTTCC
TTTCTTTCCCTTTAGGAAAATATGTTCGTAACTCCCGACAAGGAGGTATG
GGAACAGGTAGCGAGAGTATGATTGGTTTGGAAGCGAAAGACCCTCCTTT
CACAGGACATGGCCCTGAGGATGGTGAGTAAGTAACCTCTCTTTGTTTTT
GTTTATCATAGTTTGGTAAATCAATTTTGAACGTCAACATCGATGGCAAA
ATTGCTTAAATTCCTTATTTTGTCCACATGACACCGAAATACCGTCATTT
TTTCTTCAAACGCCGAACCGCCGACAGAAGAAAGGGCCAATACCGTCACA
TCGTAAAACCTGTACAAAGTCAATGTCCCCTTCATAAGCTCTTTTTATAC
CCTTTTGATAAACCCGCTGGCAGCTAAATTAAGCAACTAGAAGTTCGAAT
TTAATATTTTTGCAGATGCTGAGCCTGACCTTTCATGTCAAAAAAGTCTC
GAAAACACTGAAAACACTTTGTCCGAAACACTTTTTCTGAACCTTTCATG
CTTTTTTGGGGTGTTGTTGGCAAAAATCATTTCCCAGAAACACCTTACCT
CTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCATAA
ATCAACTCTCAATTTTCTCCATAAAATCCAAGCCAAANTCTCGAGGTGGT
GTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCCTAAATCAACTCTCA
ATTTTCTCTATAAAATCCAAGCCAAAATGCATTACCTGAAACACCGGCAA
GTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAAGGTGTTTTTCAAGAC
GATTTTGAAGCTCTTGCCGTGTCCTTTCGGGACCAATCAGATAAAAATCG
GGTTTAAAATCGGGTTAGAAATCGGGAAAAAATCGGGGAAAATAGCCAGT
TGGGACTTTTTTTAACAGTCGGCTTCAACAGGACATTCGGTGTTTCTAAA
AACTTTTAAGACTGAACCATTCGTGTTCAAAAGTGTTTTCTGCAAACCGG
GTAAGCAGTGTTTTTTTAAAGACATGAAAGGTTCAGGCTCGCTATAATAT
AATATTTTCTAAATTTCTTTCAATATTTCCTTCTCAGAGGAAGACGAGAC
TCCATCAAGAAGACATCTAGTTAAACAAAAGCCCAAACGCAAGAAGAATT
CCTGGAAAAAACCTTTTAAACAATTACAAAAGAAACAACAATAAGACACG
TTTTACACCAAGGGTTTTTATAACCTCAACAGTAAACTTATATTCAATTT
TAGCTGACTAATTTCGCTTGTATAATGCAATAGATCTTTAACTTTTTGTT
AATTTTTTGTCTGAAAGATAACACATTTCTTCCTATGGAGGAACTATTAC
ACACCGTAAATTTATATAATGTCGAAAACTCCTACCAGTTCCGTCACTCT
TCCTTGGACTTGGAGAGTTTATTTTTTGATTCTGCTTCACACATTATCTT
CATTCCTTCTCAAAGTGATACTTCGGCAAGTTGAAATGTTAGAAGCTGTG
TTTCGATCTTTTGTTCCACCTTTAAAAAGCCTCCAGACTTTCTTGTTGCA
TAGATACAAAATGCAAACGAAAATTCCCTTTAAGCTTCTCACCAAGACAA
ACAGAAATGAAAAAATCAAATTCACTGTCATCAATTCTTTACCTGGTATT
TGTACATAGCCAATGATATCAATCAAACCCAACCCAATAATCAACTTTAA
AGCAATTCTCACTAAGTCAGCATTGGCTTGATCGGACTGTAAAGTTTTTC
TTGTTTTTTTCTTAGCCAAGTGTATTTTGAGCAGAGTTTTGGCTAAGGCC
AGAATGGATATCAAATGCATGACAACCATTGGAGTGATAACAGACCACAC
CCTTGTGGGGGTATGTGTGACCCAGCACATTTTATCATAACCAACGTTGA
CATTGCCAGCCTCGTTCAAAATGACTGCAGGGAGTACGAAAAACAAAGGT
AAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003453XLOC_003453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006071-exon-sc0000062-1575043694:436159..436266TCONS_00006071-exon-sc0000062-1575043694:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434950..434988TCONS_00006071-exon-sc0000062-1575043694:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434492..434539TCONS_00006071-exon-sc0000062-1575043694:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:434062..434115TCONS_00006071-exon-sc0000062-1575043694:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:433537..433695TCONS_00006071-exon-sc0000062-1575043694:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:432491..432646TCONS_00006071-exon-sc0000062-1575043694:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:431944..432051TCONS_00006071-exon-sc0000062-1575043694:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1575043694:430112..430979TCONS_00006071-exon-sc0000062-1575043694:430112..430979Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:436159..436266TCONS_00006071-exon-sc0000062-1510915933:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434950..434988TCONS_00006071-exon-sc0000062-1510915933:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434492..434539TCONS_00006071-exon-sc0000062-1510915933:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:434062..434115TCONS_00006071-exon-sc0000062-1510915933:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:433537..433695TCONS_00006071-exon-sc0000062-1510915933:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:432491..432646TCONS_00006071-exon-sc0000062-1510915933:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:431944..432051TCONS_00006071-exon-sc0000062-1510915933:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1510915933:430112..430979TCONS_00006071-exon-sc0000062-1510915933:430112..430979Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:436159..436266TCONS_00006071-exon-sc0000062-1491911889:436159..436266Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434950..434988TCONS_00006071-exon-sc0000062-1491911889:434950..434988Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434492..434539TCONS_00006071-exon-sc0000062-1491911889:434492..434539Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:434062..434115TCONS_00006071-exon-sc0000062-1491911889:434062..434115Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:433537..433695TCONS_00006071-exon-sc0000062-1491911889:433537..433695Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:432491..432646TCONS_00006071-exon-sc0000062-1491911889:432491..432646Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:431944..432051TCONS_00006071-exon-sc0000062-1491911889:431944..432051Clytia hemisphaericaexon
TCONS_00006071-exon-sc0000062-1491911889:430112..430979TCONS_00006071-exon-sc0000062-1491911889:430112..430979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:430112..436266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0259928	0.12072	0.0295265	0.335568	0	0	0	2.05369	1.79168	0	0.49516	3.94485	3.14611	3.34208	5.56789	5.61694	4.59346	0.296954	0.279355	4.14875	4.5285	6.76727	4.77671	3.75474	4.72621	0	0.690908	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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