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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060920 ID=TCONS_00060920|Name=TCONS_00060920|organism=Clytia hemisphaerica|type=transcript|length=2590bpRun BLAST on NCBI protein sequence of TCONS_00060920-protein >TCONS_00060920-protein ID=TCONS_00060920-protein|Name=TCONS_00060920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp MSDVFQSHVLPNAKADLSQSELFTNEDTLDNKDKDFINNISSKSSKDLTPRun BLAST on NCBI transcript from alignment at scaffold_35:1..92269- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060920 ID=TCONS_00060920|Name=TCONS_00060920|organism=Clytia hemisphaerica|type=transcript|length=92269bp|location=Sequence derived from alignment at scaffold_35:1..92269- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_35:1..92269- >TCONS_00060920 ID=TCONS_00060920|Name=TCONS_00060920|organism=Clytia hemisphaerica|type=CDS|length=25146bp|location=Sequence derived from alignment at scaffold_35:1..92269- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060920 vs. Swiss-Prot (Human)
Match: TBC24 (TBC1 domain family member 24 OS=Homo sapiens GN=TBC1D24 PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 6.837e-39 Identity = 102/365 (27.95%), Postives = 182/365 (49.86%), Query Frame = 1
Query: 448 IPDGEEANNKQFLTYYLTTEGGNKLRRVLCVIKHLNPDITYCPLLEPIISILLHY-FDEEDTXXXXXXXXXXXXXAP-FMDQTKIENVTTDATLQDLFLKVNKKGFNRLNSFFKPEESTKNKVALFPAWRMCIFENLDFVSLTRLLDCLFAEGVKMLFRVGLYILQTFYDYSLTFQQLHCSTPHDLVATIGQYAESVTFSAEDLLKNATKINITTKQVIKMKQENNKLYKAQK--------LEWSERTIIKQVV-AVDLRQVSDIIKPNQWQELNEWLPARVQIMQPFMLFTTNKDGYNLKTLYQLCEDEEQTLVIIQTSNNEIFGAYLSASLQQRHDGRANMSYFGTGETFLFKLAPAPKAYHW 1509
+P E +N Q +Y L G +R++L + + PDI++CP L ++++LLHY DE + F +L+ + +DQ+ + ++ T DL K + + + +++ + ++ W+ +F L R+ D EG K+L+RV L IL+ F+ S D+ + A++V S E LL+ A I + +++ I++ Q N+ QK + S+R + V A + R S+I+ + +++ W+P R + QP +LF++ + GY+L Y CE E TL++I+T+ E+ GAYLS +R+ + +FGTGE F+F+L P + Y W
Sbjct: 90 LPLPEFVDNTQVPSYCLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAV------SEDVLQVYADWQRWLFGELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTV--SPEKLLEKAFAIRLFSRKEIQLLQMANEKALKQKGITVKQKSVSLSKRQFVHLAVHAENFR--SEIVSVREMRDIWSWVPERFALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGGKLGFFGTGECFVFRLQPEVQRYEW 444 The following BLAST results are available for this feature:
BLAST of TCONS_00060920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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