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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060532 ID=TCONS_00060532|Name=TCONS_00060532|organism=Clytia hemisphaerica|type=transcript|length=3985bpRun BLAST on NCBI protein sequence of TCONS_00060532-protein >TCONS_00060532-protein ID=TCONS_00060532-protein|Name=TCONS_00060532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp MILTGFINSKEKKQTKMQVQDSKMQWDPIWAKVHRWLEQALSTLEPTETHRun BLAST on NCBI transcript from alignment at scaffold_344:185906..198346+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060532 ID=TCONS_00060532|Name=TCONS_00060532|organism=Clytia hemisphaerica|type=transcript|length=12441bp|location=Sequence derived from alignment at scaffold_344:185906..198346+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_344:185906..198346+ >TCONS_00060532 ID=TCONS_00060532|Name=TCONS_00060532|organism=Clytia hemisphaerica|type=CDS|length=7476bp|location=Sequence derived from alignment at scaffold_344:185906..198346+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060532 vs. Swiss-Prot (Human)
Match: IRF1 (Interferon regulatory factor 1 OS=Homo sapiens GN=IRF1 PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 1.164e-27 Identity = 67/166 (40.36%), Postives = 91/166 (54.82%), Query Frame = 3
Query: 246 RQRLRPWLIDQINEGKTPGLDWVNKEQMMFKIPWKHFGRPGVDEYNDAMLFRNWALHTKKWNEGERT-DISTWKTRFRCALTKLQDIVELSNLHQTEGDDPYRVYQF-------KRKETDQNAS-SRQQNAMGSNMGQSSQMAGASPIYPGAY-RDPSSYQFPGGM 713
R R+RPWL QIN + PGL W+NKE+M+F+IPWKH + G D DA LFR+WA+HT ++ GE+ D TWK FRCA+ L DI E+ + + +G RVY+ +RKE +S + A + G SS + + D SSY PG M
Sbjct: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYM 170 The following BLAST results are available for this feature:
BLAST of TCONS_00060532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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