TCONS_00060532-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060532-protein
Unique NameTCONS_00060532-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060532-protein ID=TCONS_00060532-protein|Name=TCONS_00060532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MILTGFINSKEKKQTKMQVQDSKMQWDPIWAKVHRWLEQALSTLEPTETH
PATSSQVAWTHLNSALILKFEFQASSGMLPTDNFNPPDPNLAALQQSNMQ
TPGSPAASQMQPSPQMQPQATPELTTLQPALNQNSITAVKVKLFYKGDEM
GEKIVDNPRGLRIAFNPPPPLPDDVVRQDASEVVSHIYGPFQAEQIYFPP
SQNPEIINVLEMTKRGLVLQARNGEILATRLCRAKIFYSDSTTPSIEPRE
LPREHTTPIFDYVNDFLPKFKQYVQGQGPLPTAERYFSFAQRCPNQQSIS
NLFVYVSVTHVLAQRQINQVQSQTNDILVSDPNMLDFIAAQIEGLSIDNT
GINPL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038074XLOC_038074Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060532TCONS_00060532Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019471Interferon_reg_factor-3
IPR017855SMAD_dom-like
IPR008984SMAD_FHA_domain
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019471Interferon regulatory factor-3SMARTSM01243IRF_3_2coord: 136..321
e-value: 3.0E-35
score: 133.1
IPR019471Interferon regulatory factor-3PFAMPF10401IRF-3coord: 139..320
e-value: 3.4E-28
score: 98.6
IPR017855SMAD domain-likeGENE3D2.60.200.10coord: 122..345
e-value: 1.3E-33
score: 115.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..120
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 130..328

Blast
[Close]
BLAST of TCONS_00060532-protein vs. Swiss-Prot (Human)
Match: IRF6 (Interferon regulatory factor 6 OS=Homo sapiens GN=IRF6 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.703e-17
Identity = 62/234 (26.50%), Postives = 109/234 (46.58%), Query Frame = 0 
Query:  136 ITAVKVKLFYKGDEMGEKI-VDNPRGLRIAFNPPPPLPDDVVRQDASEVVSHIYGPFQAEQIYFPPSQNPEII----------NVLEMTKRGLVLQARNGEILATRLCRAKIFYSDSTTPS-IEPRELPREHTTPIF---DYVNDFLPKFKQYVQGQGPLPTAERYFSFAQRCPNQQSISNLFVYVSVTHVLAQRQINQV---------QSQTNDILVSDPNMLDFIAAQIEGL 345
            +T + +K  Y+G E G+ + V NP+G R+ +    P+PD             ++GP   EQ+ FP    PE I           +L++  RGL+L+     I A RLC+ K+++S    PS + P  + R+    +F    +++D +   K  ++ Q P    E Y  F +  P+ + +    + V V  V+A R I ++          S +  + +S P++ D I AQ++ L
Sbjct:  223 MTDLDIKFQYRGKEYGQTMTVSNPQGCRLFYGDLGPMPDQ----------EELFGPVSLEQVKFP---GPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSLVAPNLIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPF---EIYLCFGEEWPDGKPLERKLILVQVIPVVA-RMIYEMFSGDFTRSFDSGSVRLQISTPDIKDNIVAQLKQL 439
The following BLAST results are available for this feature:
BLAST of TCONS_00060532-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRF62.703e-1726.50Interferon regulatory factor 6 OS=Homo sapiens GN=... [more]
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