TCONS_00060263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060263
Unique NameTCONS_00060263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060263 ID=TCONS_00060263|Name=TCONS_00060263|organism=Clytia hemisphaerica|type=transcript|length=1823bp
gtaatttttagattttagaaaTTAAGTTTTGGTAACTCGATTTAAGTATA
TATTTTATCATTTATGAATGGTATATTTCCACAAGTTTTCGgttaaatga
aaatatttgtatATTGACCTTCTACAAATTGACGAAAGTAGTTCTAAATT
TAGTACTTTTACGTGCTTACCCCCGTACTAATCTGCGCGCTTTGTATAAA
TCCATGATATCCCTTCCACGATGCGGAGATCTCGAGAAGGAGCCAAGAGA
GAACAAGTAACATCTTTACCATCAATCTTACCATCTTTTACCATCTAAAG
CCAGTCGGCAGCTTTTGCCATCATGTCAGCTGCACCACAAGACCTGACTG
CCGAaagccagaaaaatattaaagaagAACATCAAGACGAAGAAGAAGCT
CCTTCAACTAAATCTGGCAAAATTATAGCCGAGAATGTCTCTGGCGTTGT
CAAGTGGTTCAATGTTCGTAACGGTTATGGATTTATCTGTCGCCATGATA
CAAATGAAGACGTTTTCATTCATCAAACTGCTGTAAAGAAGAACAACCCA
AAGAAGTATTTACGTAGTGTTGGTGATGGAGAGATCGTTGAATTTGATGT
CATGGAAGGACAAAAAGGCTTAGAAGCCGCCAACGTTACAGGACCAAATG
GGGAACCAGTCCAGGGTAGTAAATATGCACCCGACAGACGACCACGAAAC
CGTGGATATAACCGCGGTCGGGGACGTGGTCGTGGAGGATACATCCGACG
AAACAACTACAATGACCGACCAAGATCAGAAGGTACTGGAGAAGAGAAAA
GCGACAACGAAAATGACCAAGACAGATCTGAGGCTGATGAACGACCAAGA
CGATCATACAGAGGTCGTGGCCGTGGACGGGGCAGAGGACGTGGTCGTGG
ACGAGGTTATTCAGGACGTGGAGGATACATTCGACGCAACCGTGACGACG
ACGGTGAAGGTTCAGAACACTCACAAGACGGCGATCGTCGAGGAGATGAC
GGTGAGCGACGTCGCGATAACGGTGATGGTGATAGACGCCCACGACGATT
CCGCAGACGTCCACGACGTCCACCACAGAGCTCCGGAGACGAAGGTGATC
ATCGCGACCGAGGTGAGCAAGAAGAACGCGGAGACCGCGACAACGAACGT
AGAGACGGTGATAACGAACGTGGAGGTCGTGGCGGACGCCGTAGACGCCC
AAGACGTAACTTCCGTCCACGTAAGCCAAGAGGTGAAGGCGAAAACTCAG
AGGGCGGTCAATCTGAACGTCAAGATCAACAATCTGAACGTCAAGATCAA
CCTGCAAAGGACGCCCCACCCGCCCCCGCTCAAGCTTAAAGCTGTAAAAA
AAAACTCGAGTAGTTTTTTCAACCGTTGCGTTGTTTCATTCATATTAATC
GCAACTTTACGAacttattttttcattcaaaattcataTTTAGTACGAAG
GTGATTTTCCAACCTGTTAGAGAAGTAACCGAATATCCAAAAAGTTTCCA
TCTATGATGTTTTGGAAATAACACCAACATTGTTGATTTAGAACTTGAAC
TTGTAGTTTATATAAATGGTGTTCATTAAgaacttttttcataaatttac
gatctatatattataatattatattttttcctGCACTCTTAGAGATCGGG
TAGTgctatttcaaaaattcttgtaaaacgATATCTACGTCATTTTCTTT
ACACGATTCTTTGATATATTTTGACGTATGCAAGCCAGCTATTTGTTGTT
CATTTAAGATCATATATGCAACCATAATCTCTTTCTTATCTCTTGTTTAT
TGTCTATCGCCGACCACCGGAAC
Run BLAST on NCBI

protein sequence of TCONS_00060263-protein

>TCONS_00060263-protein ID=TCONS_00060263-protein|Name=TCONS_00060263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MSAAPQDLTAESQKNIKEEHQDEEEAPSTKSGKIIAENVSGVVKWFNVRN
GYGFICRHDTNEDVFIHQTAVKKNNPKKYLRSVGDGEIVEFDVMEGQKGL
EAANVTGPNGEPVQGSKYAPDRRPRNRGYNRGRGRGRGGYIRRNNYNDRP
RSEGTGEEKSDNENDQDRSEADERPRRSYRGRGRGRGRGRGRGRGYSGRG
GYIRRNRDDDGEGSEHSQDGDRRGDDGERRRDNGDGDRRPRRFRRRPRRP
PQSSGDEGDHRDRGEQEERGDRDNERRDGDNERGGRGGRRRRPRRNFRPR
KPRGEGENSEGGQSERQDQQSERQDQPAKDAPPAPAQA
Run BLAST on NCBI

transcript from alignment at scaffold_339:133890..144843-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060263 ID=TCONS_00060263|Name=TCONS_00060263|organism=Clytia hemisphaerica|type=transcript|length=10954bp|location=Sequence derived from alignment at scaffold_339:133890..144843- (Clytia hemisphaerica)
GTAATTTTTAGATTTTAGAAATTAAGTTTTGGTAACTCGATTTAAGTATA
TATTTTATCATTTATGAATGGTATATTTCCACAAGTTTTCGGTTAAATGA
AAATATTTGTATATTGACCTTCTACAAATTGACGAAAGTAGTTCTAAATT
TAGTACTTTTACGTGCTTACCCCCGTACTAATCTGCGCGCTTTGTATAAA
TCCATGATATCCCTTCCACGATGCGGAGATCTCGAGAAGGAGCCAAGAGA
GAACAAGTAACATCTTTACCATCAATCTTACCATCTTTTACCATCTAAAG
CCAGTCGGCAGCTTTTGCCATCATGTCAGCTGCACCACAAGACCTGACTG
CCGAAAGCCAGAAAAATATTAAAGAAGAACATCAAGACGAAGAAGAAGCT
CCTTCAACTAAATCTGGCAAAATTATAGGTGAGGTTACTTTAATTACTTT
CACTTTCCTTCATTTCCTGTTCTCACACTATTTTACTATTAGCTACAATA
TCCTTAGTCATCAGAGGAGAGGTTCTAGAATTTAGCCCATAGGATTCTCT
AACCAACAACCCTACCTTCTTTGGGCTGGGGATTAAAAGGGGTCTTAATG
TTGGTTCTTCCCGGTTTAGGGTCTGGTAACTGCTGGTAATGTCAAAATAT
TGGAAATGGGTTTGGGTTGGTCAGGCCAGCATACTATTGGGGTCTCAAAC
CTTTGTTTATATTGCACCCCCTATTTAAAAATCTCATGGACCAGCATATT
GCAGTAACCTGAGATCAGATTGTGATTGTTTTCTGCCCACCACGCTGAAG
CTCTAAAGGGATGGGTGAAAACATCCAGACCCGATCAATCGAACTTGTCG
AACCAATCGAACAATCAAACTAATCGAACTTCATCGAACTCTAAGATTTT
TTAAAAGATTGTGAGTGTTAGATTAAGTTAGATCAATGTGTTTCGGTCCG
ATCAGTTCGATAAACCAATTTTGTTTGACAAGTTTGTGCTACTCCACCAC
CGTATATTAGCTTCTTTTCAAAGCCAAAACAACAACAACACACTCAATAA
TATTTATTGATATTTATGAATAAAATTATTTTATTAAACAATCTTGTATT
TTATATGTAGCGAAAATGGGCCTACGGGCCTAATGTTACTTAAATATATA
GATAGATAGAGAGGTAGATTTTCCTGTATCCTTTTAGCGCCAGAGGCGGT
TTGTTGGGGCATAGTATTCCGCCACTCGGCTGCGCGCGAAATCACAACAG
AGGGGCTACGGACTTTATTCCGGAAAGACAAATATCCGGGTACAATAAAC
GTTAAGCTGTTAAGTCGGGGGAACTGTCGAAATGGCAATCGTGTCGGCAA
GTTAAAGTTTTTGCACGCGAGGGAAGATATGAAGATTTAATATCATTGAA
CTAATTGAACTGCTATAGCTTCAAAAATGGAAACATACACTCTGACGAAT
ATGCAATCTTGAAATTGTAAGGACTGCATTCGTCTAAAAGGACTGGGGAT
GACAACAAAGTTGCATGATTGTGTTTATGAATAGGGTGGCGTATCAGTTT
TTGACTTTCTGGCGCACAACAAGATTCTTGTTGTAAAAGATGTACAATTT
TCAAGCGCCTTTAGAGGTTTACTGTGCGCGTTAGAAAATTAGAACAGCTG
TTATCAGGTTAACTTGCAGTGGCTCGCACGTTAGATTTAGGAATGAAAAC
TACCGATATGTTTAAACTTTTCAATATATCTCCAGAACGAAAAGACTTTG
AAATTCTGTAAAAAAAGTTCAAACTCCTAAATAATTTTACTATGTTCTGT
GGAAAAATTGTACTGTAAGGCAACTACTTTTTTATTTTCTGGTTTACGGA
CATTTGGAGATGATCTTTTGGACCGGAGGATAGAAAAAAAATAAAAATAA
AATTGCTCTTTTCAAACTTTAATATTGGAAAAAATTAAAAAAATATGTTT
TGAGAAAACTTAAATACATTAAAGAATGTTTTTAGTAGGGAAATTGTGTT
CAAGTTATTAAAGACCTGGACACTGACCCCTTTACTTGCCCTTTTTACTT
TTATAAAATGTAATTTTCTATAAAGTTTCCTTTTATGGCTGTTCAGTACA
AGGTCGGAAGAGCATAAATTAATAAAATACCGGGTGCGCCACAAAAAAGT
TTCTCTCTTTAAAACTAATTTTCTAGAAATCTAAAGATTTTAAAAGAACC
ATTCCTACTTTACTGGAAAGAAGAAAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATAAACTTAAATTTTGATGGGTCATTTATTAAATTCGATTCATTAGAT
CAAAAGTTATGCTCAATTGAATAAAAAAGTTACTTTCTGAAATTGTTAAA
AAACGTTGAAAATCGACCTATCAAATTAAACAGAAGCATAATCAATGATA
CATCATTATCCTTCGTTTCGGTCATTAAAAATGATAATTAGCTGTCTAAA
TGACCTTTTGTTATGTAAAGGAAAGTTAAATTTCAATAAAAGGCAGAAAA
TTCGTCGAAAAAGGCAAAAAAATCTGGTAAAATTCATGAAAATACATAAA
ATATTAGTTTCGAGGTAAATCCAGCCTTACATAGACTTTATCCAATCTAA
AACCGAAAATCGGAGGAAAATTTCGGTAAAAGTAAATTCAAGTGATTTTG
ATGAAGATTTTAAACCCTTTCGGCCTTTCAGTCTCGAAATGTTATGTGTT
TAATCACTGAAAAATGCTTTTAATCATGTAAAGGTTATTGCGATTGCCAA
TTTTAATATAGAAATTTGATAGGTCGATTTTCAACGTTTTCGAACACTTT
CAGATAGTAACTTTTTTATTCAATTGAGCATAACTTTTGATCTAATGAAT
CGAATTTAATAAATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCC
AGTAAAATAGAAATGGTTCTTTTAAAATCTTTAGATTTCTAGAAGATTAG
TTTTAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTATTTGTAAAATCCA
ATTTTATTTTTATTTTATTTTTGCAAAGGAAACGTCGGTGATTCCGTAAA
CCAGAAAATAAAAAAGTAATTGCCTAACCATTAGTGAAATATAAATCTCC
TGCATTTCCAAAAATTTTCTGATTTCCTGAAAAAAAAATCGATTTTCCTT
GGATTTTGTGGGGGAAAAAAAACCGATTTCGAAAAAATTGGATTGACAGC
TACGTGGCCCAGTGGTATAGACAATATGTTTTGTAATCGAAAACATGTAG
GTTCGAACTGGTGTAAAGTATCAAAAAGTTATGAAAAAATCTCTAAGTCT
CAGTGTATCTTGAAGATCTGGCTGTAAGTCGTGTTTTCTCTCAATCTTGT
TTTGAAGTGAGAATTATTTTTTGTTCCAGATCACATGGAATTTTTGTCAT
CCAATCATATCGTGTGATTTCACTTTCGCTTTCTCTAGTCCAAAAAGACA
GGGGATTTGAGTCACGTGAAGACATGTGATTTGAGTCACGTGAAGACATG
TGATTTGAGTTATGTGACATCTGTCTTTAAAAACTGGTGCAAAATACAAT
AGAAATAAGCTGTCTACATGGTGTCAGCCCCCCCCACAGAAATCTGAAGG
GCACCTAGGCCAGGTTAGTAGAGGGGGGCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACAAATGAAAAAAG
AACAAAAAGTGTCAATTCAAAAAAAAATTTTTTGGCTGAATGGGGGTACC
TAACTCAAAGCAATTTCTCAAGGGGACCTAAATTGCTGGGGGCACCATGC
TCAATGGGGGCACCTGAAAAGTGGGCTNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTGAATGGGGGTACCTAACTCAAAGCAATTTCTCAAGGGGACCTAA
ATTGCTGGGGGCACCATGCTCAATTGGGGCACCTGAAAAGTGGGCTGAAA
CCATGGTCTACCAGGTGTCATACTACTGGCTACAGTAACTGAAAGCAAAC
AATTGAAGCTGATGTTTTTGGTTTTTCTGAAGGACGAAGGTATAGGAAGG
TTTATTAAAGGCGGCTTGAAGCTGGGACTATTTATTTAAGAGATATGGGG
TGATATTAAGCATTTTACTTAGAAACAATAATTCCATTGCCATCTTTGCC
ATGAGCGAGGGAGACATATTGATTACCTCTGCTGAAAAATTCCAGATTTA
AACTGAAAACCAATTCTTGCAAGTCAGTGAAAATTTAAAAATGTTGGTTT
TTGACAGTTTCTAATCCTTAAAAGCAAAATTTTGTAAAAGTTATGCAATC
CATGCTTGTATTTCTTTAGGGTTTACCCATTCGTTGTCAAGATAATTTTT
ATTTTAAACTGATTGCTTTATGAAATAAAAAGACACAATAAAAAATTGAT
TATCCTACGCAAACAAGTAGGGAAATAAAGGCAAAAACAGGTCTGTACCT
CTAGAGACCAAACAGTGGAGAGGATGTGAATTATTTAAAAGATGTATTTC
CATAGTATTTGTCAAACAAAAATGCAATATAATTGGCAAATTTTGACTTT
AGTGAGACACATTCTTTCTTTCACTTTGCTGGTATAGTTGTATGTCCTCT
TACAAAACTTCATTGAAATTTTAGACCTGTAGACCCAGGGGACATTCAAT
CTGTAGCCTACAATCTGGACCCGTGCAGAAAGAAAATTTGACCACAATTT
GGAAAAAATTAGGGCCTCAGAATTGAGTTTTACAGCTATCTTCCAATTCT
GGGTGACGTAAGTTTTTTTTTTGCAAGACAATTTTCTCAAAAAAATTACA
CTTTGCGGGACATTTTCGCGAGCTAAGGATAATATTTTGCGAATTAGCCT
CTTTTTACCTACTTTCCTTCATTTTTCAAAGAGCTTAGGTAAAAATCAAT
CTGGTTTTGAAGTCGCAAGGGACCATATAGTTGTTTGGATGTTCTTTTGA
ATAACTTATTACTCTCAGGTACCTAATAGCCGCGGGGCTGCTAATTAATT
TTAGAAAATTTTCCACCCAGGACAAACCCCCCCTCCAAAAGTTCCCTCTT
TTGCTCTGATTCTTCTGTATTAGCCTCCTTTTCGAAAACTTTCCACCCAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCAAAAAAGTGAAGAAAG
AGTCTTGTAAAATTTTGCTTTGGCATTGCTGAATACTGACCTGGATTCAC
AGGGCTGCGAAAGTTATTGAATTCCTTTTCCATGGAATAACACAAGTTGG
CAGCTAGGCGACTGATTACAAAAGTTGCAAAGGAATTAAAAGGCCTTACT
CTTAGGTGCCAAATAAACGGGCCCCCCCGCTTGTTAATTTTTCGATTTTT
TTCCAACCCCCCTGGACCTTATTAGGACCCCCCCGTTTATTAATTTTTGA
AAAAATTCCCTGCTATCAAAAGGAAAGTTAACTAGATAAAAATATAAACA
AATGACTGTCATAAGTTCTGAAGGTTAAAAAGAGTTCATCCATTACCTAT
GACATATGTTTCCTAAAGGAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTCCATTTTAGCTGCTCAGGGTCC
TATTAGCAAGGTTGAAATTTTTTGCAGGACACATCCTGCGTATCTTTCAG
CTTTGGCTGAAGGAAAGTGCCGTGGGCAAACAAAGGTTGAGGAAAATCCT
TTTATTTGACATGTGATATAACTAGCTACGAGTCTCACTCGATACAACTT
TCGGATTTCACATTAGTTTCTTTTTCTTAATCTTCTACTCTCTTCTTTTT
CAGCCGAGAATGTCTCTGGCGTTGTCAAGTGGTTCAATGTTCGTAACGGT
TATGGATTTATCTGTCGCCATGATACAAATGAAGACGTTTTCATTCATCA
AACTGCTGTAAAGAAGAACAACCCAAAGAAGTATTTACGTAGTGTTGGTG
ATGGAGAGATCGTTGAATTTGATGTCATGGAAGGACAAAAAGGCTTAGAA
GCCGCCAACGTTACAGGACCAAATGGGGAACCAGTCCAGGGTAGTAAATA
TGCACCCGACAGACGACCACGAAACCGTGGATATAACCGCGGTCGGGGAC
GTGGTCGTGGAGGATACATCCGACGAAACAACTACAATGACCGACCAAGA
TCAGAAGGTACTGGAGAAGAGAAAAGCGACAACGAAAATGACCAAGACAG
ATCTGAGGCTGATGAACGACCAAGACGATGTAAGAACTTTTTCTCATTAG
TAAAAAAGGTTAGACAAGTACAATAGTTGACTTTTTGCCCAATGTGTTTG
ATGAGAGAACATCACTTATGATTTTTACTGACTTTAACACTAATGGTTCG
ATGTAGTTGAAAGATATTAGTGGCTGACGCACTGAGTTTCACCTTGCTTT
CAAATGATGTTTTTTCTCCTTAGCATACAGAGGTCGTGGCCGTGGACGGG
GCAGAGGACGTGGTCGTGGACGAGGTTATTCAGGACGTGGAGGATACATT
CGACGCAACCGTGACGACGACGGTGAAGGTTCAGAACACTCACAAGACGG
CGATCGTCGAGGAGATGACGGTGAGCGACGTCGCGATAACGGTGATGGTG
ATAGACGCCCACGACGATTCCGCAGACGTCCACGGTAAGAGGCCTTTATT
TATATCTTTGATTCAAATAGCTGAGTTCTCTGAAGTAAAGAGTGCAAGTC
TCGGTAACGCTTTTTCTTCCAAGACATCCTCCTGAACGATGCTTGTTCTA
GGATTTTACACAATTTTTCAATATGTAATGTCTCTTGTCATTACAGACGT
CCACCACAGAGCTCCGGAGACGAAGGTGATCATCGCGACCGAGGTGAGCA
AGAAGAACGCGGAGACCGCGACAACGAACGTAGAGACGGTGATAACGAAC
GTGGAGGTCGTGGCGGACGCCGTAGACGCCCAAGACGTAACTTCCGTCCA
CGTAAGCCAAGAGGTGAAGGCGAAAACTCAGAGGGCGGTCAATCTGAACG
TCAAGATCAACAATCTGAACGTCAAGATCAACCTGCAAAGGACGCCCCAC
CCGCCCCCGCTCAAGCTTAAAGCTGTAAAAAAAAACTCGAGTAGTTTTTT
CAACCGTTGCGTTGTTTCATTCATATTAATCGCAACTTTACGAACTTATT
TTTTCATTCAAAATTCATATTTAGTACGAAGGTGATTTTCCAACCTGTTA
GAGAAGTAACCGAATATCCAAAAAGTTTCCATCTATGATGTTTTGGAAAT
AACACCAACATTGTTGATTTAGAACTTGAACTTGTAGTTTATATAAATGG
TGTTCATTAAGAACTTTTTTCATAAATTTACGATCTATATATTATAATAT
TATATTTTTTCCTGCACTCTTAGAGATCGGGTAGTGCTATTTCAAAAATT
CTTGTAAAACGATATCTACGTCATTTTCTTTACACGATTCTTTGATATAT
TTTGACGTATGCAAGCCAGCTATTTGTTGTTCATTTAAGATCATATATGC
AACCATAATCTCTTTCTTATCTCTTGTTTATTGTCTATCGCCGACCACCG
GAAC

Coding sequence (CDS) from alignment at scaffold_339:133890..144843-

>TCONS_00060263 ID=TCONS_00060263|Name=TCONS_00060263|organism=Clytia hemisphaerica|type=CDS|length=4068bp|location=Sequence derived from alignment at scaffold_339:133890..144843- (Clytia hemisphaerica)
ACGTCCACCACAGAGCTCCGGAGACGAAGGTGATCATCGCGACCGAGGTG
AGCAAGAAGAACGCGGAGACCGCGACAACGAACGTAGAGACGGTGATAAC
GAACGTGGAGGTCGTGGCGGACGCCGTAGACGCCCAAGACGTAACTTCCG
TCCACGTAAGCCAAGAGGTGAAGGCGAAAACTCAGAGGGCGGTCAATCTG
AACGTCAAGATCAACAATCTGAACGTCAAGATCAACCTGCAAAGGACGCC
CCACCCGCCCCCGCTCAAGCTTAACATACAGAGGTCGTGGCCGTGGACGG
GGCAGAGGACGTGGTCGTGGACGAGGTTATTCAGGACGTGGAGGATACAT
TCGACGCAACCGTGACGACGACGGTGAAGGTTCAGAACACTCACAAGACG
GCGATCGTCGAGGAGATGACGGTGAGCGACGTCGCGATAACGGTGATGGT
GATAGACGCCCACGACGATTCCGCAGACGTCCACGCCGAGAATGTCTCTG
GCGTTGTCAAGTGGTTCAATGTTCGTAACGGTTATGGATTTATCTGTCGC
CATGATACAAATGAAGACGTTTTCATTCATCAAACTGCTGTAAAGAAGAA
CAACCCAAAGAAGTATTTACGTAGTGTTGGTGATGGAGAGATCGTTGAAT
TTGATGTCATGGAAGGACAAAAAGGCTTAGAAGCCGCCAACGTTACAGGA
CCAAATGGGGAACCAGTCCAGGGTAGTAAATATGCACCCGACAGACGACC
ACGAAACCGTGGATATAACCGCGGTCGGGGACGTGGTCGTGGAGGATACA
TCCGACGAAACAACTACAATGACCGACCAAGATCAGAAGGTACTGGAGAA
GAGAAAAGCGACAACGAAAATGACCAAGACAGATCTGAGGCTGATGAACG
ACCAAGACGATATGTCAGCTGCACCACAAGACCTGACTGCCGAAAGCCAG
AAAAATATTAAAGAAGAACATCAAGACGAAGAAGAAGCTCCTTCAACTAA
ATCTGGCAAAATTATAGACGTCCACCACAGAGCTCCGGAGACGAAGGTGA
TCATCGCGACCGAGGTGAGCAAGAAGAACGCGGAGACCGCGACAACGAAC
GTAGAGACGGTGATAACGAACGTGGAGGTCGTGGCGGACGCCGTAGACGC
CCAAGACGTAACTTCCGTCCACGTAAGCCAAGAGGTGAAGGCGAAAACTC
AGAGGGCGGTCAATCTGAACGTCAAGATCAACAATCTGAACGTCAAGATC
AACCTGCAAAGGACGCCCCACCCGCCCCCGCTCAAGCTTAACATACAGAG
GTCGTGGCCGTGGACGGGGCAGAGGACGTGGTCGTGGACGAGGTTATTCA
GGACGTGGAGGATACATTCGACGCAACCGTGACGACGACGGTGAAGGTTC
AGAACACTCACAAGACGGCGATCGTCGAGGAGATGACGGTGAGCGACGTC
GCGATAACGGTGATGGTGATAGACGCCCACGACGATTCCGCAGACGTCCA
CGCCGAGAATGTCTCTGGCGTTGTCAAGTGGTTCAATGTTCGTAACGGTT
ATGGATTTATCTGTCGCCATGATACAAATGAAGACGTTTTCATTCATCAA
ACTGCTGTAAAGAAGAACAACCCAAAGAAGTATTTACGTAGTGTTGGTGA
TGGAGAGATCGTTGAATTTGATGTCATGGAAGGACAAAAAGGCTTAGAAG
CCGCCAACGTTACAGGACCAAATGGGGAACCAGTCCAGGGTAGTAAATAT
GCACCCGACAGACGACCACGAAACCGTGGATATAACCGCGGTCGGGGACG
TGGTCGTGGAGGATACATCCGACGAAACAACTACAATGACCGACCAAGAT
CAGAAGGTACTGGAGAAGAGAAAAGCGACAACGAAAATGACCAAGACAGA
TCTGAGGCTGATGAACGACCAAGACGATATGTCAGCTGCACCACAAGACC
TGACTGCCGAAAGCCAGAAAAATATTAAAGAAGAACATCAAGACGAAGAA
GAAGCTCCTTCAACTAAATCTGGCAAAATTATAGACGTCCACCACAGAGC
TCCGGAGACGAAGGTGATCATCGCGACCGAGGTGAGCAAGAAGAACGCGG
AGACCGCGACAACGAACGTAGAGACGGTGATAACGAACGTGGAGGTCGTG
GCGGACGCCGTAGACGCCCAAGACGTAACTTCCGTCCACGTAAGCCAAGA
GGTGAAGGCGAAAACTCAGAGGGCGGTCAATCTGAACGTCAAGATCAACA
ATCTGAACGTCAAGATCAACCTGCAAAGGACGCCCCACCCGCCCCCGCTC
AAGCTTAACATACAGAGGTCGTGGCCGTGGACGGGGCAGAGGACGTGGTC
GTGGACGAGGTTATTCAGGACGTGGAGGATACATTCGACGCAACCGTGAC
GACGACGGTGAAGGTTCAGAACACTCACAAGACGGCGATCGTCGAGGAGA
TGACGGTGAGCGACGTCGCGATAACGGTGATGGTGATAGACGCCCACGAC
GATTCCGCAGACGTCCACGCCGAGAATGTCTCTGGCGTTGTCAAGTGGTT
CAATGTTCGTAACGGTTATGGATTTATCTGTCGCCATGATACAAATGAAG
ACGTTTTCATTCATCAAACTGCTGTAAAGAAGAACAACCCAAAGAAGTAT
TTACGTAGTGTTGGTGATGGAGAGATCGTTGAATTTGATGTCATGGAAGG
ACAAAAAGGCTTAGAAGCCGCCAACGTTACAGGACCAAATGGGGAACCAG
TCCAGGGTAGTAAATATGCACCCGACAGACGACCACGAAACCGTGGATAT
AACCGCGGTCGGGGACGTGGTCGTGGAGGATACATCCGACGAAACAACTA
CAATGACCGACCAAGATCAGAAGGTACTGGAGAAGAGAAAAGCGACAACG
AAAATGACCAAGACAGATCTGAGGCTGATGAACGACCAAGACGATATGTC
AGCTGCACCACAAGACCTGACTGCCGAAAGCCAGAAAAATATTAAAGAAG
AACATCAAGACGAAGAAGAAGCTCCTTCAACTAAATCTGGCAAAATTATA
GACGTCCACCACAGAGCTCCGGAGACGAAGGTGATCATCGCGACCGAGGT
GAGCAAGAAGAACGCGGAGACCGCGACAACGAACGTAGAGACGGTGATAA
CGAACGTGGAGGTCGTGGCGGACGCCGTAGACGCCCAAGACGTAACTTCC
GTCCACGTAAGCCAAGAGGTGAAGGCGAAAACTCAGAGGGCGGTCAATCT
GAACGTCAAGATCAACAATCTGAACGTCAAGATCAACCTGCAAAGGACGC
CCCACCCGCCCCCGCTCAAGCTTAACATACAGAGGTCGTGGCCGTGGACG
GGGCAGAGGACGTGGTCGTGGACGAGGTTATTCAGGACGTGGAGGATACA
TTCGACGCAACCGTGACGACGACGGTGAAGGTTCAGAACACTCACAAGAC
GGCGATCGTCGAGGAGATGACGGTGAGCGACGTCGCGATAACGGTGATGG
TGATAGACGCCCACGACGATTCCGCAGACGTCCACGCCGAGAATGTCTCT
GGCGTTGTCAAGTGGTTCAATGTTCGTAACGGTTATGGATTTATCTGTCG
CCATGATACAAATGAAGACGTTTTCATTCATCAAACTGCTGTAAAGAAGA
ACAACCCAAAGAAGTATTTACGTAGTGTTGGTGATGGAGAGATCGTTGAA
TTTGATGTCATGGAAGGACAAAAAGGCTTAGAAGCCGCCAACGTTACAGG
ACCAAATGGGGAACCAGTCCAGGGTAGTAAATATGCACCCGACAGACGAC
CACGAAACCGTGGATATAACCGCGGTCGGGGACGTGGTCGTGGAGGATAC
ATCCGACGAAACAACTACAATGACCGACCAAGATCAGAAGGTACTGGAGA
AGAGAAAAGCGACAACGAAAATGACCAAGACAGATCTGAGGCTGATGAAC
GACCAAGACGATATGTCAGCTGCACCACAAGACCTGACTGCCGAAAGCCA
GAAAAATATTAAAGAAGAACATCAAGACGAAGAAGAAGCTCCTTCAACTA
AATCTGGCAAAATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037906XLOC_037906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060263-exon-scaffold_339-1575043694:144416..144843TCONS_00060263-exon-scaffold_339-1575043694:144416..144843Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1575043694:135215..135640TCONS_00060263-exon-scaffold_339-1575043694:135215..135640Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1575043694:134810..135020TCONS_00060263-exon-scaffold_339-1575043694:134810..135020Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1575043694:133890..134647TCONS_00060263-exon-scaffold_339-1575043694:133890..134647Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1510915933:144416..144843TCONS_00060263-exon-scaffold_339-1510915933:144416..144843Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1510915933:135215..135640TCONS_00060263-exon-scaffold_339-1510915933:135215..135640Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1510915933:134810..135020TCONS_00060263-exon-scaffold_339-1510915933:134810..135020Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1510915933:133890..134647TCONS_00060263-exon-scaffold_339-1510915933:133890..134647Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1491911889:144416..144843TCONS_00060263-exon-scaffold_339-1491911889:144416..144843Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1491911889:135215..135640TCONS_00060263-exon-scaffold_339-1491911889:135215..135640Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1491911889:134810..135020TCONS_00060263-exon-scaffold_339-1491911889:134810..135020Clytia hemisphaericaexon
TCONS_00060263-exon-scaffold_339-1491911889:133890..134647TCONS_00060263-exon-scaffold_339-1491911889:133890..134647Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060263-proteinTCONS_00060263-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:133890..144843 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3165.37	3237.36	2885.03	2885.03	2403.89	1862.16	2084.26	2139.16	1991.45	2142.64	1661.72	1986.13	1925.82	1898.98	2477.63	2474.53	3241.44	3292.89	1875.17	1750.23	2917.23	3020.37	3469.81	3111.78	2730.74	2656.05	1957.24	1873.69	2664.94	2712.17
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR019844Cold-shock_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00060263 vs. Swiss-Prot (Human)
Match: YBOX1 (Nuclease-sensitive element-binding protein 1 OS=Homo sapiens GN=YBX1 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.316e-43
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 2 
Query:  398 APSTKSGKIIAENVSGVVKWFNVRNGYGFICRHDTNEDVFIHQTAVKKNNPKKYLRSVGDGEIVEFDVMEGQKGLEAANVTGPNGEPVQGSKYAPD 685
            AP+    K+IA  V G VKWFNVRNGYGFI R+DT EDVF+HQTA+KKNNP+KYLRSVGDGE VEFDV+EG+KG EAANVTGP G PVQGSKYA D
Sbjct:   46 APAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 141
The following BLAST results are available for this feature:
BLAST of TCONS_00060263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YBOX12.316e-4376.04Nuclease-sensitive element-binding protein 1 OS=Ho... [more]
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