TCONS_00060263-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060263-protein
Unique NameTCONS_00060263-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060263-protein ID=TCONS_00060263-protein|Name=TCONS_00060263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MSAAPQDLTAESQKNIKEEHQDEEEAPSTKSGKIIAENVSGVVKWFNVRN
GYGFICRHDTNEDVFIHQTAVKKNNPKKYLRSVGDGEIVEFDVMEGQKGL
EAANVTGPNGEPVQGSKYAPDRRPRNRGYNRGRGRGRGGYIRRNNYNDRP
RSEGTGEEKSDNENDQDRSEADERPRRSYRGRGRGRGRGRGRGRGYSGRG
GYIRRNRDDDGEGSEHSQDGDRRGDDGERRRDNGDGDRRPRRFRRRPRRP
PQSSGDEGDHRDRGEQEERGDRDNERRDGDNERGGRGGRRRRPRRNFRPR
KPRGEGENSEGGQSERQDQQSERQDQPAKDAPPAPAQA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037906XLOC_037906Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060263TCONS_00060263Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR019844Cold-shock_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 62..71
score: 58.31
coord: 81..99
score: 53.1
coord: 41..56
score: 69.24
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 40..107
e-value: 1.2E-23
score: 82.6
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 39..107
e-value: 3.88323E-19
score: 78.7746
IPR011129Cold shock domainSMARTSM00357csp_8coord: 40..108
e-value: 6.6E-22
score: 88.8
NoneNo IPR availableGENE3D2.40.50.140coord: 32..117
e-value: 2.9E-25
score: 87.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..338
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 52..71
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 37..107

Blast
[Close]
BLAST of TCONS_00060263-protein vs. Swiss-Prot (Human)
Match: YBOX1 (Nuclease-sensitive element-binding protein 1 OS=Homo sapiens GN=YBX1 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.685e-46
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0 
Query:   26 APSTKSGKIIAENVSGVVKWFNVRNGYGFICRHDTNEDVFIHQTAVKKNNPKKYLRSVGDGEIVEFDVMEGQKGLEAANVTGPNGEPVQGSKYAPD 121
            AP+    K+IA  V G VKWFNVRNGYGFI R+DT EDVF+HQTA+KKNNP+KYLRSVGDGE VEFDV+EG+KG EAANVTGP G PVQGSKYA D
Sbjct:   46 APAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 141
The following BLAST results are available for this feature:
BLAST of TCONS_00060263-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YBOX11.685e-4676.04Nuclease-sensitive element-binding protein 1 OS=Ho... [more]
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