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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059665 ID=TCONS_00059665|Name=TCONS_00059665|organism=Clytia hemisphaerica|type=transcript|length=1901bpRun BLAST on NCBI protein sequence of TCONS_00059665-protein >TCONS_00059665-protein ID=TCONS_00059665-protein|Name=TCONS_00059665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp MANFLVIFLFVEKFLLSVEAGYTIIYQGPGKYAYKVDQINKKIGECVTLQRun BLAST on NCBI transcript from alignment at scaffold_330:102475..107815+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059665 ID=TCONS_00059665|Name=TCONS_00059665|organism=Clytia hemisphaerica|type=transcript|length=5341bp|location=Sequence derived from alignment at scaffold_330:102475..107815+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_330:102475..107815+ >TCONS_00059665 ID=TCONS_00059665|Name=TCONS_00059665|organism=Clytia hemisphaerica|type=CDS|length=13662bp|location=Sequence derived from alignment at scaffold_330:102475..107815+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059665 vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.155e-18 Identity = 81/283 (28.62%), Postives = 125/283 (44.17%), Query Frame = 3
Query: 627 CAQY-FAKGETWNRASENCQAIGAELTTIENEVENRFISSMLET-ATGAWIGLNDRESESQYVWNFKQSSSQTYFTWGKNEPSNYNGNCNIENC-VTMKKSNGYWNDVICDSFYPFVCQVSTSYNESDVSE-------------WTCRGNSCFKLFNDHLVWSEAVSRCRK-------IHPTAHIAAITSGSINDLVRTLIKEPTWIGLNDIREAGDYEWEGSDSSF-SYSNWDWGEPNDIFIRDRQLSCPGEDCVQIKKFGGDVTWHDLGCGTVLPYICERV 1403
C Q+ F +W A +C+ GA+L +I E +I+ +L ++ WIGLND ++ + W+ +S Y W ++P N + ENC V +S+G W + C P+VC+ + W C++L + W E+ C + IH A + IT I V L WIGLND++ ++EW SD S S+++W EPN+ RD EDCV I +G + W+D C LP IC++
Sbjct: 248 CYQFNFQSTLSWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDLDTSGGWQWS--DNSPLKYLNWESDQPDNPSE----ENCGVIRTESSGGWQNRDCSIALPYVCKKKPNATAEPTPPDRWANVKVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITK-QIKQEVEEL-----WIGLNDLKLQMNFEW--SDGSLVSFTHWHPFEPNN--FRDSL-----EDCVTI--WGPEGRWNDSPCNQSLPSICKKA 507 HSP 2 Score: 81.2629 bits (199), Expect = 8.614e-16 Identity = 62/243 (25.51%), Postives = 106/243 (43.62%), Query Frame = 3
Query: 576 EAKCPSGWTYVIGTSSMCAQYFAKGETWNRASENCQAIGAELTTIENEVENRFISSML-ETATGAWIGLNDRESESQYVWNFKQSSSQTYFTWGKNEPSNYNGNCNIENCVTMKKSNGYWNDVICDSFYPFVCQVSTSYNESDVSE-------WTCRGNSCFKLFNDHLVWSEAVSRCRKIHPTAHIAAITSGSINDLVRTLI----KEPTWIGLNDIREAGDYEWEGSDSSFSYSNWDWGEP 1268
+ +C W G C + A+ +W + + C G +L +I + E FI+ + + WIGLND + + + W+ S ++ W EP+N+ + +E+CVT+ G WND C+ P +C+ + ++ E WT SC+ L D + +SEA C + + IT+ V +LI E W L D+ G + W D Y++W+ +P
Sbjct: 379 KVECEPSWQPFQG---HCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWS--DGSLVSFTHWHPFEPNNFRDS--LEDCVTIWGPEGRWNDSPCNQSLPSICKKAGQLSQGAAEEDHGCRKGWTWHSPSCYWLGEDQVTYSEARRLCTDH--GSQLVTITNRFEQAFVSSLIYNWEGEYFWTALQDLNSTGSFFWLSGDEVM-YTHWNRDQP 611 The following BLAST results are available for this feature:
BLAST of TCONS_00059665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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