TCONS_00059665-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059665-protein
Unique Name	TCONS_00059665-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	505

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059665-protein ID=TCONS_00059665-protein|Name=TCONS_00059665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MANFLVIFLFVEKFLLSVEAGYTIIYQGPGKYAYKVDQINKKIGECVTLQ
PVINFPTNGTERITWKKDTHSLIQSERIKVLADGNLQIRSLEPSDFAYYQ
ATVENTFGKATESTDLWLHVTGCGKHEKELARSSSLSCTTLCEAKCPSGW
TYVIGTSSMCAQYFAKGETWNRASENCQAIGAELTTIENEVENRFISSML
ETATGAWIGLNDRESESQYVWNFKQSSSQTYFTWGKNEPSNYNGNCNIEN
CVTMKKSNGYWNDVICDSFYPFVCQVSTSYNESDVSEWTCRGNSCFKLFN
DHLVWSEAVSRCRKIHPTAHIAAITSGSINDLVRTLIKEPTWIGLNDIRE
AGDYEWEGSDSSFSYSNWDWGEPNDIFIRDRQLSCPGEDCVQIKKFGGDV
TWHDLGCGTVLPYICERVRDRAFSTGAYVAIVIGAFLFALLVIGLAHAAY
QRKKRTAVKDIIKAAYKEDIKLRKSEVKEKQKISFRSAARMVVPSIKVYN
NLKSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037545	XLOC_037545	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059665	TCONS_00059665	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003599	Ig_sub
IPR001304	C-type_lectin-like
IPR016186	C-type_lectin-like/link
IPR013098	Ig_I-set
IPR013783	Ig-like_fold
IPR018378	C-type_lectin_CS
IPR016187	CTDL_fold
IPR007110	Ig-like_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003599	Immunoglobulin subtype	SMART	SM00409	IG_3c	coord: 36..121 e-value: 0.0077 score: 25.4
IPR001304	C-type lectin-like	SMART	SM00034	CLECT_2	coord: 284..416 e-value: 8.6E-19 score: 78.4 coord: 146..275 e-value: 1.0E-26 score: 104.7
IPR001304	C-type lectin-like	PFAM	PF00059	Lectin_C	coord: 305..417 e-value: 3.0E-10 score: 40.7 coord: 167..275 e-value: 7.9E-18 score: 65.1
IPR001304	C-type lectin-like	PROSITE	PS50041	C_TYPE_LECTIN_2	coord: 156..275 score: 21.888
IPR001304	C-type lectin-like	PROSITE	PS50041	C_TYPE_LECTIN_2	coord: 291..416 score: 21.274
IPR016186	C-type lectin-like/link domain	GENE3D	3.10.100.10		coord: 127..278 e-value: 1.2E-31 score: 109.2
IPR016186	C-type lectin-like/link domain	GENE3D	3.10.100.10		coord: 281..424 e-value: 2.1E-28 score: 98.7
IPR013098	Immunoglobulin I-set	PFAM	PF07679	I-set	coord: 57..116 e-value: 1.6E-6 score: 28.0
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 32..126 e-value: 5.4E-12 score: 45.2
IPR018378	C-type lectin, conserved site	PROSITE	PS00615	C_TYPE_LECTIN_1	coord: 390..415
None	No IPR available	CDD	cd00037	CLECT	coord: 160..276 e-value: 1.46923E-25 score: 100.002
IPR016187	C-type lectin fold	SUPERFAMILY	56436	C-type lectin-like	coord: 146..277
IPR016187	C-type lectin fold	SUPERFAMILY	56436	C-type lectin-like	coord: 287..417
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 38..117

Blast

[Close]

BLAST of TCONS_00059665-protein vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.990e-19
Identity = 81/283 (28.62%), Postives = 125/283 (44.17%), Query Frame = 0

Query:  160 CAQY-FAKGETWNRASENCQAIGAELTTIENEVENRFISSMLET-ATGAWIGLNDRESESQYVWNFKQSSSQTYFTWGKNEPSNYNGNCNIENC-VTMKKSNGYWNDVICDSFYPFVCQVSTSYNESDVSE-------------WTCRGNSCFKLFNDHLVWSEAVSRCRK-------IHPTAHIAAITSGSINDLVRTLIKEPTWIGLNDIREAGDYEWEGSDSSF-SYSNWDWGEPNDIFIRDRQLSCPGEDCVQIKKFGGDVTWHDLGCGTVLPYICERV 418
            C Q+ F    +W  A  +C+  GA+L +I    E  +I+ +L   ++  WIGLND ++   + W+   +S   Y  W  ++P N     + ENC V   +S+G W +  C    P+VC+   +                     W      C++L  +   W E+   C +       IH  A +  IT   I   V  L     WIGLND++   ++EW  SD S  S+++W   EPN+   RD       EDCV I  +G +  W+D  C   LP IC++ 
Sbjct:  248 CYQFNFQSTLSWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDLDTSGGWQWS--DNSPLKYLNWESDQPDNP----SEENCGVIRTESSGGWQNRDCSIALPYVCKKKPNATAEPTPPDRWANVKVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITK-QIKQEVEEL-----WIGLNDLKLQMNFEW--SDGSLVSFTHWHPFEPNN--FRDSL-----EDCVTI--WGPEGRWNDSPCNQSLPSICKKA 507

HSP 2 Score: 80.8777 bits (198), Expect = 6.361e-16
Identity = 62/243 (25.51%), Postives = 106/243 (43.62%), Query Frame = 0

Query:  143 EAKCPSGWTYVIGTSSMCAQYFAKGETWNRASENCQAIGAELTTIENEVENRFISSML-ETATGAWIGLNDRESESQYVWNFKQSSSQTYFTWGKNEPSNYNGNCNIENCVTMKKSNGYWNDVICDSFYPFVCQVSTSYNESDVSE-------WTCRGNSCFKLFNDHLVWSEAVSRCRKIHPTAHIAAITSGSINDLVRTLI----KEPTWIGLNDIREAGDYEWEGSDSSFSYSNWDWGEP 373
            + +C   W    G    C +  A+  +W  + + C   G +L +I +  E  FI+  + +     WIGLND + +  + W+    S  ++  W   EP+N+  +  +E+CVT+    G WND  C+   P +C+ +   ++    E       WT    SC+ L  D + +SEA   C      + +  IT+      V +LI     E  W  L D+   G + W   D    Y++W+  +P
Sbjct:  379 KVECEPSWQPFQG---HCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWS--DGSLVSFTHWHPFEPNNFRDS--LEDCVTIWGPEGRWNDSPCNQSLPSICKKAGQLSQGAAEEDHGCRKGWTWHSPSCYWLGEDQVTYSEARRLCTDH--GSQLVTITNRFEQAFVSSLIYNWEGEYFWTALQDLNSTGSFFWLSGDEVM-YTHWNRDQP 611

The following BLAST results are available for this feature:

BLAST of TCONS_00059665-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059665-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MRC2	9.990e-19	28.62	C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 ...	[more]

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TCONS_00059665-protein (polypeptide) - C. hemisphaerica