TCONS_00058765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058765
Unique NameTCONS_00058765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058765 ID=TCONS_00058765|Name=TCONS_00058765|organism=Clytia hemisphaerica|type=transcript|length=3365bp
CAAAAATGTTATCTGAATTAATATAACAACGCAAATTAAAGCATATTTAT
TTCTAATGTTCATATAGTCTGGTTACCCTGGCAACTTTGACACAACACAT
CGAAACAAATATAAAAAGgcgctttttttctttgttcgatCGTTTCCCCC
TTACCACGTGATAGAGTGATCTTGTTTTTGATTGGTCTAAACGAAGAAAA
TAGCAAATCAGATTTCTCAACGGTTGTACAAATTTTGCATCTGCTTCACG
ATTTATCATTTCTGTTCTGCTGGTGAAAAGGAAATACAAGCGAACCGTTA
CGTATCGCAAAGTATATCCACTTATTTTTGACCTTGAAGACTTTTTTGAA
GGACATTTGAAACCATACAGATTAATTCAATATGCGTGAGTGTATTTCTG
TCCACATTGGCCAAGCTGGTGTCCAAATTGGAAATGCTTGCTGGGAATTG
TACTGTTTGGAACATGGAATTCAACCTGATGGTCAAATGCCTTCTGACAA
AACCATCGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAGACTG
GTGCTGGTAAACACGTCCCCAGAGCTGTCTTCATGGATTTGGAACCAACA
GTTGTTGACGAGATCAGAACCGGAACATACCGTCAACTCTTCCATCCTGA
ACAATTGATCACCGGAAAAGAAGATGCAGCAAACAATTATGCTCGTGGTC
ATTACACTGTTGGTAAAGAAATCATTGACCAATTTTGGACCGTACAAGAA
AACTTGCTGATCAATGTACTGGTCTTCAAGGATTCTTGATCTTCCACTCC
TTCGGTGGTGGCACCGGATCTGGATTCACTTCATTGTTGATGGAACGTCT
CTCAGTAGATTATGGAAAGAAATCCAAACTGGAGTTTGCAGTCTACCCAG
CACCACAAATCTCCACAGCTGTTGTTGAACCATACAACTCTGTATTGACC
ACTCACACCACTTTGGAGCACTCCGATTGTGCTTTCATGGTTGATAACGA
AGCCATCTACGATATCTGCCGACGAAACTTGGACATCGAACGTCCAACAT
ACACCAACTTGAACAGATTGATCGGTCAAATTGTCTCCTCCATTACCGCA
TCTTTGAGATTCGACGGTGCTTTGAATGTCGATTTAACTGAGTTCCAAAC
TAACTTGGTACCATACCCACGTATCCATTTCCCCTTGGCAACTTACGCTC
CAGTCATCTCTGCCGAGAAAGCTTACCATGAACAACTCACTGTCTCTGAA
ATCACCAACGCCTGTTTCGAACCAGCCAACCAGATGGTCAAATGCGATCC
TCGTCATGGTAAATACATGGCTTGTTGTCTGTTGTACCGTGGTGATGTTG
TCCCCAAAGACGTCAATGCAGCTATCGCCACCATCAAAACCAAACGAACC
ATCCAATTCGTCGATTGGTGTCCAACTGGATTCAAAGTTGGTATCAACTA
CCAACCACCAACCGTTGTCCCAGGAGGTGATCTTGCTAAAGTTCAACGTG
CTGTCTGTATGTTGTCCAACACAACTGCCGTCGCTGAAGCTTGGGCTCGT
CTTGATCATAAATTTGATTTAATGTACGCCAAACGTGCTTTTGTCCATTG
GTATGTTGGTGAAGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAG
ACATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCTCAA
GATGATGATGGCGAAGAAGAAGGAGACGAATATTAAACCTGCCACGTGAT
CCAGTCACGTGATCCCATACTCAATCTCCTCCGTATTCAACCAATACTAT
TATCCAAACCGTTATTTCTGGGCTATAAAAAAGAGCTATGATCTTGTGTT
AATATTTAACGCCTccttttatattattttttatattattttcatttaat
cTTTCATGTGAATAACGAACGTAACTAGAACTTGAAACACGTgatattca
aatattttcatactTACCTTAAcgctttaagtgccacggtcattttttct
aagttttttgaaagaaaatcgctagttcaaactttaaaggcttatatctc
cgcatctagaaggagttagaagctcgtgtATTGTCCGTTGGATAGCtaag
agtctcctctttcttttaggcgccttcggcgccgcccgatttcgGAAGGA
CGGGGTGGGTGGCGGCAAAGAGGGGGGTAGGTAAGGGAAATTAAAGCAGT
CAAAAAcagtcaaaatcttaaaaaagtggatttttgtcaaatttttgcat
attttttactttttagcttaaaatctcgctgaaaagactcactttagatt
ttttttttgcgtgaccatgaagcccaatccaattcctacgagttagtcca
aaaatgacgatttctaactcaaactgggcattacaggagggcttcgccct
cttacatagcccatgtctgatatatatacgacattggcacttaaagggtg
aGAACGAACTTTGACGAGTaacaaaattctgaaaataatagtaacgtaat
ttttttattttggcgaggaaaaattaaacttttgagGAAAATCTCCTTCA
AAGTCTCTCTTTTACTATAAGGCTAGTATAAGCTACTTTAAGTCACACAT
CTgctaaattggaaaaaaaagattatttcgCTATTCTTTGTTTTATTCAA
TTGAACTAGAATCTGAGAATTTTATTTCCTAAAACTTGTACAGGCCTGAC
AAATGatccaaaatggctgaaatttaGCTCACATTTTTTCTTGAGTATAC
CCGTgaacatttcttttatttttcgaaaatttttattttaggcgCCTAGG
CACTAGTTTTTCGTGAAAACTAGGAtacaatttttgtcaaattatgGCTG
AAATTTCGCACACTTAATCCTAAGGTGAATATCTGGGagtgtttttcctt
tttctttcaaaataatttttgggaCTTGGGGTGATATGATCACTTTTAAT
GCAGATAAGTTTGGAAATAGAAGGGCTCTTAAGGgctcttaagggctctg
gtcatagtgaaaaatcaatttcagaatttgaagataaaaccttatgtttt
cgcttctttgacatgtttaagaacaaactgcttttgaaaaaatgaattta
agtaattacatcatgagtaattaaggaataagtgtggcatggaccttaat
aaaacgtcataatgACGCTATTCATTGaccaagttatagctgttttcgta
tggaaatttagtggagaaaattgccaaaaatgaggttttttggagatttt
aaagggaagatacttccacaaaaactttccgaaattgtatttttagatat
tAAATAATTACATCagctgaaccaaaaaaaaatccaaaatgtttgatttt
taccgagattagggc
Run BLAST on NCBI

protein sequence of TCONS_00058765-protein

>TCONS_00058765-protein ID=TCONS_00058765-protein|Name=TCONS_00058765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFM
VDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLT
EFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMV
KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV
GINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRA
FVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSQDDDGEEEGDEY
Run BLAST on NCBI

transcript from alignment at scaffold_313:489017..493624-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058765 ID=TCONS_00058765|Name=TCONS_00058765|organism=Clytia hemisphaerica|type=transcript|length=4608bp|location=Sequence derived from alignment at scaffold_313:489017..493624- (Clytia hemisphaerica)
CAAAAATGTTATCTGAATTAATATAACAACGCAAATTAAAGCATATTTAT
TTCTAATGTTCATATAGTCTGGTTACCCTGGCAACTTTGACACAACACAT
CGAAACAAATATAAAAAGGCGCTTTTTTTCTTTGTTCGATCGTTTCCCCC
TTACCACGTGATAGAGTGATCTTGTTTTTGATTGGTCTAAACGAAGAAAA
TAGCAAATCAGATTTCTCAACGGTTGTACAAATTTTGCATCTGCTTCACG
ATTTATCATTTCTGTTCTGCTGGTGAAAAGGAAATACAAGCGAACCGTTA
CGTATCGCAAAGTATATCCACTTATTTTTGACCTTGAAGACTTTTTTGAA
GGACATTTGAAACCATACAGATTAATTCAATATGGTAAGGAATCTTAATG
TTTTTAATATTATATTCTTTCACTTTCACATTTAAGTTAATTTTCCACTT
AATTTTTTTCTCGATTGAAAACACTGTAAACATTAACAACAGTCTGCTGT
GAGATTTTCAACTCTCGGCCTCGATTCTGATTAATTTAATAACCTAGACC
TTTCCTGACTAATGATATTAATACTGTTACAAACCTATACTTTTAAAAGA
ACATCCAAAATTTTTGAAAAAAGGACACGTTATGAAATAATCTAATCCTT
ATTATTTTTATAGCGTGAGTGTATTTCTGTCCACATTGGCCAAGCTGGTG
TCCAAATTGGAAATGCTTGCTGGGAATTGTACTGTTTGGAACATGGAATT
CAACCTGATGGTCAAATGCCTTCTGACAAAACCATCGGAGGTGGAGATGA
TTCATTCAACACTTTCTTCAGTGAGACTGGTGCTGGTAAACACGTCCCCA
GAGCTGTCTTCATGGATTTGGAACCAACAGTTGTTGGTAAGCTTCTTATT
ATCTCCAAAATTTTTGAAGCCTTCGAATGTTCTTAACTTTTTGAGTTTTA
AGCCTAAAAATTGTTCTTAACATGTTCTTATTGTGACCATTTTGTGAATA
TTTTTGACCATTTTCCTAACAAATCGGGTGTTTTTGAGTCCACAAAGCTC
TTAACATTTTTGCCAGTGAAGCCTTATGTTCTTATATAGTTTCTTCTTAT
AAAAAAAACGTCGCACACTTTCTTTGCAAGAACCTATACACTCAGAAACA
GAGGTGCCACATCTTCCACTGGGAAAAGGAAAATGTGATAGTTACCGAAA
TTATATTCGCATAGGAATTTTACTCGGTCGCTGAGAAAGGTGTGTACTTA
AAAACTTTTTCTTAACTAAAAGTTACACCTAGATCATATTACTGTACTTG
CAGTGTTTAACTTTAACGTATAAATATAATCAAATAATAGCTTGGTTGCC
TGATCTTATCTTATTTCTTCTTCATCAATTTTCAGACGAGATCAGAACCG
GAACATACCGTCAACTCTTCCATCCTGAACAATTGATCACCGGAAAAGAA
GATGCAGCAAACAATTATGCTCGTGGTCATTACACTGTTGGTAAAGAAAT
CATTGACCAAGTTTTGGACCGTACAAGNGAAGATGCAGCAAACAACTACG
CTCGTGGTCATTACACTGTTGGTAAAGAAATCATTGACCAAGTTTTGGAC
CGTACAAGAAAACTTGCTGATCAATGTACTGGTCTTCAAGGATTCTTGAT
CTTCCACTCCTTCGGTGGTGGCACCGGATCTGGATTCACTTCATTGTTGA
TGGAACGTCTCTCAGTAGATTATGGAAAGAAATCCAAACTGGAGTTTGCA
GTCTACCCAGCACCACAAATCTCCACAGCTGTTGTTGAACCATACAACTC
TGTATTGACCACTCACACCACTTTGGAGCACTCCGATTGTGCTTTCATGG
TTGATAACGAAGCCATCTACGATATCTGCCGACGAAACTTGGACATCGAA
CGTCCAACATACACCAACTTGAACAGATTGATCGGTCAAATTGTCTCCTC
CATTACCGCATCTTTGAGATTCGACGGTGCTTTGAATGTCGATTTAACTG
AGTTCCAAACTAACTTGGTACCATACCCACGTATCCATTTCCCCTTGGCA
ACTTACGCTCCAGTCATCTCTGCCGAGAAAGCTTACCATGAACAACTCAC
TGTCTCTGAAATCACCAACGCCTGTTTCGAACCAGCCAACCAGATGGTCA
AATGCGATCCTCGTCATGGTAAATACATGGCTTGTTGTCTGTTGTACCGT
GGTGATGTTGTCCCCAAAGACGTCAATGCAGCTATCGCCACCATCAAAAC
CAAACGAACCATCCAATTCGTCGATTGGTGTCCAACTGGATTCAAAGTTG
GTATCAACTACCAACCACCAACCGTTGTCCCAGGAGGTGATCTTGCTAAA
GTTCAACGTGCTGTCTGTATGTTGTCCAACACAACTGCCGTCGCTGAAGC
TTGGGCTCGTCTTGATCATAAATTTGATTTAATGTACGCCAAACGTGCTT
TTGTCCATTGGTATGTTGGTGAAGGTAAGGATCATGACGTCATTCTCTAA
AAATTATTTTCGTTAAGTATGTCTGTAGTAGCTCCCCTGGTTACTTGAGA
AAGCCGAAAGTCCTCTTTATAAAAACAGGGGAAAATCAATTTGTCCTCAA
AGGTACAATCCTTTGAACTAATGAAAATGAAAATTTCATGATTTCAAATG
AAATGTCATTATATAGTCAATTGTATACCTCTTAATGTCAAATTTTGATA
CACCTATTATCCCTGTTTTAAGAGGTAAAAACTTAAAACCAATAATTTTC
ATACAGCTTTGATTTAAGGTTTGATAAGGGTATACCTTCCTTAAACCAGT
GATATGTACATTCCATAACTGATTTGTTGATAATCTCTTTCTTTCTTTTT
CTCTCAGGTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGC
AGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCTCAAGATGATG
ATGGCGAAGAAGAAGGAGACGAATATTAAACCTGCCACGTGATCCAGTCA
CGTGATCCCATACTCAATCTCCTCCGTATTCAACCAATACTATTATCCAA
ACCGTTATTTCTGGGCTATAAAAAAGAGCTATGATCTTGTGTTAATATTT
AACGCCTCCTTTTATATTATTTTTTATATTATTTTCATTTAATCTTTCAT
GTGAATAACGAACGTAACTAGAACTTGAAACACGTGATATTCAAATATTT
TCATACTTACCTTAACGCTTTAAGTGCCACGGTCATTTTTTCTAAGTTTT
TTGAAAGAAAATCGCTAGTTCAAACTTTAAAGGCTTATATCTCCGCATCT
AGAAGGAGTTAGAAGCTCGTGTATTGTCCGTTGGATAGCTAAGAGTCTCC
TCTTTCTTTTAGGCGCCTTCGGCGCCGCCCGATTTCGGAAGGACGGGGTG
GGTGGCGGCAAAGAGGGGGGTAGGTAAGGGAAATTAAAGCAGTCAAAAAC
AGTCAAAATCTTAAAAAAGTGGATTTTTGTCAAATTTTTGCATATTTTTT
ACTTTTTAGCTTAAAATCTCGCTGAAAAGACTCACTTTAGATTTTTTTTT
TGCGTGACCATGAAGCCCAATCCAATTCCTACGAGTTAGTCCAAAAATGA
CGATTTCTAACTCAAACTGGGCATTACAGGAGGGCTTCGCCCTCTTACAT
AGCCCATGTCTGATATATATACGACATTGGCACTTAAAGGGTGAGAACGA
ACTTTGACGAGTAACAAAATTCTGAAAATAATAGTAACGTAATTTTTTTA
TTTTGGCGAGGAAAAATTAAACTTTTGAGGAAAATCTCCTTCAAAGTCTC
TCTTTTACTATAAGGCTAGTATAAGCTACTTTAAGTCACACATCTGCTAA
ATTGGAAAAAAAAGATTATTTCGCTATTCTTTGTTTTATTCAATTGAACT
AGAATCTGAGAATTTTATTTCCTAAAACTTGTACAGGCCTGACAAATGAT
CCAAAATGGCTGAAATTTAGCTCACATTTTTTCTTGAGTATACCCGTGAA
CATTTCTTTTATTTTTCGAAAATTTTTATTTTAGGCGCCTAGGCACTAGT
TTTTCGTGAAAACTAGGATACAATTTTTGTCAAATTATGGCTGAAATTTC
GCACACTTAATCCTAAGGTGAATATCTGGGAGTGTTTTTCCTTTTTCTTT
CAAAATAATTTTTGGGACTTGGGGTGATATGATCACTTTTAATGCAGATA
AGTTTGGAAATAGAAGGGCTCTTAAGGGCTCTTAAGGGCTCTGGTCATAG
TGAAAAATCAATTTCAGAATTTGAAGATAAAACCTTATGTTTTCGCTTCT
TTGACATGTTTAAGAACAAACTGCTTTTGAAAAAATGAATTTAAGTAATT
ACATCATGAGTAATTAAGGAATAAGTGTGGCATGGACCTTAATAAAACGT
CATAATGACGCTATTCATTGACCAAGTTATAGCTGTTTTCGTATGGAAAT
TTAGTGGAGAAAATTGCCAAAAATGAGGTTTTTTGGAGATTTTAAAGGGA
AGATACTTCCACAAAAACTTTCCGAAATTGTATTTTTAGATATTAAATAA
TTACATCAGCTGAACCAAAAAAAAATCCAAAATGTTTGATTTTTACCGAG
ATTAGGGC

Coding sequence (CDS) from alignment at scaffold_313:489017..493624-

>TCONS_00058765 ID=TCONS_00058765|Name=TCONS_00058765|organism=Clytia hemisphaerica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_313:489017..493624- (Clytia hemisphaerica)
GTATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTG
GAGAAAGATTACGAAGAAGTCGGTGTTGATTCTCAAGATGATGATGGCGA
AGAAGAAGGAGACGAATATTAAATGGAACGTCTCTCAGTAGATTATGGAA
AGAAATCCAAACTGGAGTTTGCAGTCTACCCAGCACCACAAATCTCCACA
GCTGTTGTTGAACCATACAACTCTGTATTGACCACTCACACCACTTTGGA
GCACTCCGATTGTGCTTTCATGGTTGATAACGAAGCCATCTACGATATCT
GCCGACGAAACTTGGACATCGAACGTCCAACATACACCAACTTGAACAGA
TTGATCGGTCAAATTGTCTCCTCCATTACCGCATCTTTGAGATTCGACGG
TGCTTTGAATGTCGATTTAACTGAGTTCCAAACTAACTTGGTACCATACC
CACGTATCCATTTCCCCTTGGCAACTTACGCTCCAGTCATCTCTGCCGAG
AAAGCTTACCATGAACAACTCACTGTCTCTGAAATCACCAACGCCTGTTT
CGAACCAGCCAACCAGATGGTCAAATGCGATCCTCGTCATGGTAAATACA
TGGCTTGTTGTCTGTTGTACCGTGGTGATGTTGTCCCCAAAGACGTCAAT
GCAGCTATCGCCACCATCAAAACCAAACGAACCATCCAATTCGTCGATTG
GTGTCCAACTGGATTCAAAGTTGGTATCAACTACCAACCACCAACCGTTG
TCCCAGGAGGTGATCTTGCTAAAGTTCAACGTGCTGTCTGTATGTTGTCC
AACACAACTGCCGTCGCTGAAGCTTGGGCTCGTCTTGATCATAAATTTGA
TTTAATGTACGCCAAACGTGCTTTTGTCCATTGGTATGTTGGTGAAGGTA
TGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTGGAG
AAAGATTACGAAGAAGTCGGTGTTGATTCTCAAGATGATGATGGCGAAGA
AGAAGGAGACGAATATTAAATGGAACGTCTCTCAGTAGATTATGGAAAGA
AATCCAAACTGGAGTTTGCAGTCTACCCAGCACCACAAATCTCCACAGCT
GTTGTTGAACCATACAACTCTGTATTGACCACTCACACCACTTTGGAGCA
CTCCGATTGTGCTTTCATGGTTGATAACGAAGCCATCTACGATATCTGCC
GACGAAACTTGGACATCGAACGTCCAACATACACCAACTTGAACAGATTG
ATCGGTCAAATTGTCTCCTCCATTACCGCATCTTTGAGATTCGACGGTGC
TTTGAATGTCGATTTAACTGAGTTCCAAACTAACTTGGTACCATACCCAC
GTATCCATTTCCCCTTGGCAACTTACGCTCCAGTCATCTCTGCCGAGAAA
GCTTACCATGAACAACTCACTGTCTCTGAAATCACCAACGCCTGTTTCGA
ACCAGCCAACCAGATGGTCAAATGCGATCCTCGTCATGGTAAATACATGG
CTTGTTGTCTGTTGTACCGTGGTGATGTTGTCCCCAAAGACGTCAATGCA
GCTATCGCCACCATCAAAACCAAACGAACCATCCAATTCGTCGATTGGTG
TCCAACTGGATTCAAAGTTGGTATCAACTACCAACCACCAACCGTTGTCC
CAGGAGGTGATCTTGCTAAAGTTCAACGTGCTGTCTGTATGTTGTCCAAC
ACAACTGCCGTCGCTGAAGCTTGGGCTCGTCTTGATCATAAATTTGATTT
AATGTACGCCAAACGTGCTTTTGTCCATTGGTATGTTGGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037011XLOC_037011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058765-proteinTCONS_00058765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058765-exon-scaffold_313-1575043694:493241..493624TCONS_00058765-exon-scaffold_313-1575043694:493241..493624Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1575043694:492739..492961TCONS_00058765-exon-scaffold_313-1575043694:492739..492961Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1575043694:492115..492239TCONS_00058765-exon-scaffold_313-1575043694:492115..492239Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1575043694:491151..492032TCONS_00058765-exon-scaffold_313-1575043694:491151..492032Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1575043694:489017..490767TCONS_00058765-exon-scaffold_313-1575043694:489017..490767Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1510915933:493241..493624TCONS_00058765-exon-scaffold_313-1510915933:493241..493624Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1510915933:492739..492961TCONS_00058765-exon-scaffold_313-1510915933:492739..492961Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1510915933:492115..492239TCONS_00058765-exon-scaffold_313-1510915933:492115..492239Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1510915933:491151..492032TCONS_00058765-exon-scaffold_313-1510915933:491151..492032Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1510915933:489017..490767TCONS_00058765-exon-scaffold_313-1510915933:489017..490767Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1491911889:493241..493624TCONS_00058765-exon-scaffold_313-1491911889:493241..493624Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1491911889:492739..492961TCONS_00058765-exon-scaffold_313-1491911889:492739..492961Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1491911889:492115..492239TCONS_00058765-exon-scaffold_313-1491911889:492115..492239Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1491911889:491151..492032TCONS_00058765-exon-scaffold_313-1491911889:491151..492032Clytia hemisphaericaexon
TCONS_00058765-exon-scaffold_313-1491911889:489017..490767TCONS_00058765-exon-scaffold_313-1491911889:489017..490767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:489017..493624 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.4633	35.3202	45.996	42.5994	6411.48	4932.67	3352.6	3471.23	1844.4	2299.54	1433.19	1906.76	30.4118	30.8584	10.1539	10.1769	43.978	52.33	82.1896	79.5908	56.1426	55.745	48.0867	46.6539	92.7542	82.3735	37.8787	36.9708	18.0689	16.5034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
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BLAST of TCONS_00058765 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 305/315 (96.83%), Postives = 314/315 (99.68%), Query Frame = 3 
Query:  732 ILDRTRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 1676
            +LDR RKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY
Sbjct:  118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432

HSP 2 Score: 244.588 bits (623), Expect = 0.000e+0
Identity = 110/116 (94.83%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:  382 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFMDLEPTVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIID 729
            MRECIS+H+GQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF+DLEPTV+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIID
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIID 116
The following BLAST results are available for this feature:
BLAST of TCONS_00058765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+096.83Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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