TCONS_00058765-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058765-protein
Unique NameTCONS_00058765-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058765-protein ID=TCONS_00058765-protein|Name=TCONS_00058765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFM
VDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLT
EFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMV
KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV
GINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRA
FVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSQDDDGEEEGDEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037011XLOC_037011Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058765TCONS_00058765Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 39..59
score: 59.18
coord: 25..38
score: 68.58
coord: 227..255
score: 54.81
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 194..207
score: 93.16
coord: 232..248
score: 83.89
coord: 168..189
score: 90.07
coord: 269..285
score: 84.78
coord: 8..19
score: 83.19
coord: 61..73
score: 88.95
coord: 121..136
score: 81.09
coord: 207..226
score: 89.41
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 95..240
e-value: 4.0E-59
score: 212.4
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 113..230
e-value: 2.5E-60
score: 201.3
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 110..238
e-value: 2.5E-51
score: 173.1
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 1..93
e-value: 0.0048
score: -29.6
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 2..60
e-value: 2.6E-11
score: 44.0
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..112
e-value: 1.2E-49
score: 168.5
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..92
NoneNo IPR availableGENE3D1.10.287.600coord: 231..282
e-value: 4.4E-31
score: 106.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..298
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 1..282
e-value: 0.0
score: 628.414
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 93..283

Blast
[Close]
BLAST of TCONS_00058765-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 286/298 (95.97%), Postives = 293/298 (98.32%), Query Frame = 0 
Query:    1 MERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSQDDDGEEEGDEY 298
            MERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTV+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS   DGE+EG+EY
Sbjct:  154 MERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA--DGEDEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00058765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+095.97Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
back to top