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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056520 ID=TCONS_00056520|Name=TCONS_00056520|organism=Clytia hemisphaerica|type=transcript|length=1652bp
AGTAAGTGTGTCCAGTCATATCAAAACAAcactagaaaaattaaaattta
gaaGTGGGTTGTGTTGTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATG
ACATGACTATAACCGTGTTTGTTCTGTAATTCTGCCTACTTCATAACCAA
ATATTATTCCAACAATACACGGTCACATCCATAAAAAGTATGATGTAAAG
TTTAGTATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGG
TGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATA
CTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGC
AAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGC
AGAAGATGATCCAAACTGTcccatttcaaattttgaattcaaagatGAGA
ATGATAGTACAGTAGAGTATTCTATATCAGATCCGGAATCTATAGACATA
GACTCGCTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATT
AATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAA
tagagaaaattgaaaaaaataactataCTCCATATGCTAAATATGTTTTA
TTGCGAAATAAAATTGAtaagaaatcatcaaaacatattCCTTTAGCtaa
gcaaaaagaattttttgcaaACAGTAAATTGCGCTTAAAGATTGATCATG
TAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAA
GAAGAACTGCCAGAATTACTAGTACTCCCgtcatcagaaagcaaagttaa
GGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTG
ACTCTTCCCCTGGTGgcagaaaaaagaagaagaagaaaaggatcaaTTGT
GCAACATCATAAGAATTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGA
ATTTTGTTTACAGAAGCAGGGTTTTGCTTTGTGTTTTGCATGGATGGCAA
ATGACAAGGTAAACTCTGGGAGAGTTAAAGAATAATGCAGTAGTATTTTT
agtttgttttatatttttgctttttgaaagcACAGGATAATAAGTTATGT
TTTAACTCTTTAATATTATTAGCTCTATAAGACAGGCTATTTGATGAGAG
CACTCTACAAAATGAAAGTGTCTGTTACTTATTGGTATTGAATTTTATTG
ACTTTCCATAGCTTGTGAATGTGATGACTCAGTTAAAATTTTAGTTATAA
TATCCTTTTAAGAGTTATCTATCTTTATTATTTATGAAATTCACATacag
tatttttgtttatttataatCATTTATATTACGTGTCATGCAGTGCTCTA
CCTTATTTTTAACAGAACAGTAATCTCTTGAGAGgaattgataaaaataa
aaattttcactttgtttTAGTCAATCTTTGATTTACTTAATTAGTTATAC
ATCATTTGATGATGATTTTGTGTTATTGCGTTCTAGTTGCCGCTCTGAAA
TTAGGAAATTTATAatcatatttttatttgattttcttaattaaacttta
gttttaaaaaagaacttttgtattttgaagCTATATTTTACTTGAAATAG
TT Run BLAST on NCBI transcript from alignment at scaffold_276:709556..714486- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056520 ID=TCONS_00056520|Name=TCONS_00056520|organism=Clytia hemisphaerica|type=transcript|length=4931bp|location=Sequence derived from alignment at scaffold_276:709556..714486- (Clytia hemisphaerica)
AGTAAGTGTGTCCAGTCATATCAAAACAACACTAGAAAAATTAAAATTTA
GAAGTGGGTTGTGTTGTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATG
ACATGACTATAACCGTGTTTGTTCTGTAATTCTGCCTACTTCATAACCAA
ATATTATTCCAACAATACACGGTCACATCCATAAAAAGTATGATGTAAAG
GTATAAACACATTTCTTGTTTCTTGCATTTTGATTTTAGTATAGTAAGAT
AGTCTATCGGTGTTGTCAACAGTCTGTCCCTGTGACAAGGTACCCTGTGA
CAAACAAAAACAAGAACCTGACACCTGAAATAGCTAAATACAACCTGATG
GTTTGGGGGAGAATGATGGTCATGGAGAAGGGTTTGATTGTAGACTTCTC
CTTACCTCTCCTTCTCCTAGCTTTTGATGTGGTGATAAACAGGGTTTTGA
AGATTTCTGATTATAATTTTCCATAGAGGGGCTTTTTCATACATTTTTCT
AGAATTACACAATCATTGAAGGATTCAGGGGTCATGTCATTATCTGAAAT
CCAGGAGACAGTCTTTTCGAAGAACGCCACGCTCTTTTGAATAACTGACA
ATTCCAGCATACATTTTTATAGTATGATAATGTCATATAATAATTGATTT
GTCTTTTACAACACAGCTGTTACCAGTTACCGTCAACTGCTCTAACTTGG
GACTATCTGACAAACAGCAATTCAGCCACCATTTCACCAAACCTCCAAAG
TCAGAAAGTCCTTTGATTTGAGTTAATGAAGGACGTATTAAAAAATACAC
GATTTCTCTTTCGCACCGAGTAGGCTTTAAATCGAAATATGAAAAAAATC
TCATAGTGGAACACATGCAAATGTCTGGAAAAAAGAAGACCAAGTTAGTG
GCAAAACAATCAGTCAGGCACATCCTGGCAAATGAACGGGGTGAGCATTT
GCATGGGGTATTCGTCACCCAGTGTAAATGAGATAGGACGTCTCAGGCTA
AAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATCTATGCAATTCTTTGAAATGAAGCAAAATA
TTTCCAACCCGGTTCAATTAAACTGGGTATTCGGCGCTATTACGTCACTT
TCGTTTTCGACCCCGTTCATTTTGCCAATGGTCGCAAGTGAAAAATACCC
CGTTCATTTGCCAGGATGTGCCTGACTGACAATGGAGCGTTTGACGTCAC
TCGCGTGGCAAGTTAAACACTGATATTTGTTAATCCCATCAGGCGATAGG
CGGTTAGGCAGTGGGCATTCTCTTATTCTCTTATCAGCGTCTGGTCATTT
TGAATAAAAAAAAAAAGTTAAAAAGGGCGCGCTATCCATCAGTGAAAGTT
ATCGTGACATGTTATGACAGAAAGTATGATTGATTAACTTGGTGGAGGTA
GCAAAACAAACTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAGA
CCAGAATATCAACAGTCCCTTGTTTTGACCAATCGCCCCAAGTTAGAGCA
GTTGACGGTACCTAGAGACAAGATGATTTAGAGTAATTTGTTATTCAGAC
TATCGCGTTCTCCTAAACAACTATTGCATTCATCAGAGGGACAAAAAGAT
TATAATAGTTGCTTGGGAGACCACAACGGTCTATTGCATAACTTATTACT
CCACACTTCAGTGGATACAATGGGATAAGTAAAGGAAGCGAGAAATTAGA
TATGACCTATGAATAAGTTTTGTTCAAATTGGCATGTTAACATTCTCCCG
AATTTGCATGCGATATCACTGCGAATCTTCTCGTGCTGCGTCCTATAAAG
TATTAGCTGAGGTAGTAGGGTTATATTTCCATAAATTGGAGCAGATAATT
TCCGGTCCAAAGTGTTTGAGTAATTAATATGGGGAACTGAGTCAATAGGT
CGTTGCGTTCTCCTAAACGACTATAAAAAGAATAGCAGATTTGACCATTA
TTTTATTGCCTTTTCGTGATTTATGCAATAGACCTTTCCTGTAATTCCTT
AAAAACAAGTACTATATTTCTTTCCTTGAGTTATCATGATTTGAAACCAT
TTGAAAAATACCTCTCTAGTTTAGTATGGCAAAGACTTCATCACGTCCTA
ACAGTACTTATGATGACGGTGAAGTTATTGGATTGCCAGTGAAGTTTGGC
AGCGGTAGATGGAAAAATACTAAACAAGTGTCAGGAACAAGATTCAAAAT
ATGTTTATGTGGAAAAAGCAAAGTTGGAAAGACATCAATCTTTATGAGAC
TTCAGGGATTGGATTTTGCAGAAGATGATCCAAACTGTCCCATTTCAAAT
TTTGAATTCAAAGATGAGAATGATAGTACAGTAGAGGTAAGATTTTGGAA
ATGACCAGAGAAAAAGTATATAACATTGAACCCAGTAGACTTGAACTACA
AAGCGCTTATTTCTTTTTTAATTGTTGGGAAAATATTCTTATTAGAACAT
AATCTCGTATCTTATGTCAATATTTCTTGTAGCCTCTTATTCACAAATCA
AGCTTTTTCATTATTGTATCTTTCCATTTCAGTATTCTATATCAGATCCG
GAATCTATAGACATAGACTCGCTGACATTTGGGGACCATTACCGAAATGC
ACACTGTGTTGTATTAATATATGATGTCACTGACTTTAGTTCTTTGGATT
ATTTGAGCTATGAAATAGAGAAAATTGAAAAAAATAACTATACTCCATAT
GCTAAATATGTTTTATTGCGAAATAAAATTGATAAGAAATCATCAAAACA
TATTCCTTTAGCTAAGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCT
TAAAGATTGATCATGTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATA
TTAGAATTCTTCAAAGAAGAACTGCCAGAATTACTAGTACTCCCGTCATC
AGAAAGCAAAGTTAAGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAG
GGCTAGATGCAACTGACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAG
AAAAGGATCAATTGTGCAACATCATAAGAATTTCATAAAGATTTACTTCA
GAAAAAGCTTCCAGAATTTTGTTTACAGAAGCAGGCGTTTTGCTTTGTGT
TTTGCATGGATGGCAAATGACAAGGTAAACTCTGGGAGATTTAAAGAATA
ATGCAGTAGTATTTTTAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACA
GGATAATAAGTTATGTTTTAACTCTTTAATATTATTAGCTCTATAAGACA
GGCTATTTGATGAGAGCACTCTACAAAATGACTTTATTGACTTTCCATAG
CTTGTGAATGTGATGACNCCAGAGAAAAAGTATATAACATTGAACCCAGT
AGACTTGAACTACAAAGCGCTTATTTCTTTTTTAATTGTTGGGAAAATAT
TCTTATTAGAACATAATCTCGTATCTTATGTCAATATTTCTTGTAGCCTC
TTATTCACAAATCAAGCTTTTTCATTATTGTATCTTTCCATTTCAGTATT
CTATATCAGATCCGGAATCTATAGACATAGACTCGCTGACATTTGGGGAC
CATTACCGAAATGCACACTGTGTTGTATTAATATATGATGTCACTGACTT
TAGTTCTTTGGATTATTTGAGCTATGAAATAGAGAAAATTGAAAAAAATA
ACTATACTCCATATGCTAAATATGTTTTATTGCGAAATAAAATTGATAAG
AAATCATCAAAACATATTCCTTTAGCTAAGCAAAAAGAATTTTTTGCAAA
CAGTAAATTGCGCTTAAAGATTGATCATGTAGTTGAAACCTCTGCAAAAA
CAAATGAAGGCATATTAGAATTCTTCAAAGAAGAACTGCCAGAATTACTA
GTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCTTTGATCGCCTTGTTAG
TGATTCCCAACAAGGGCTAGATGCAACTGACTCTTCCCCTGGTGGCAGAA
AAAAGAAGAAGAAGAAAAGGATCAATTGTGCAACATCATAAGAATTTCAT
AAAGATTTACTTCAGAAAAAGCTTCCAGAATTTTGTTTACAGAAGCAGGG
TTTTGCTTTGTGTTTTGCATGGATGGCAAATGACAAGGTAAACTCTGGGA
GAGTTAAAGAATAATGCAGTAGTATTTTTAGTTTGTTTTATATTTTTGCT
TTTTGAAAGCACAGGATAATAAGTTATGTTTTAACTCTTTAATATTATTA
GCTCTATAAGACAGGCTATTTGATGAGAGCACTCTACAAAATGAAAGTGT
CTGTTACTTATTGGTATTGAATTTTATTGACTTTCCATAGCTTGTGAATG
TGATGACTCAGTTAAAATTTTAGTTATAATATCCTTTTAAGAGTTATCTA
TCTTTATTATTTATGAAATTCACATACAGTATTTTTGTTTATTTATAATC
ATTTATATTACGTGTCATGCAGTGCTCTACCTTATTTTTAACAGAACAGT
AATCTCTTGAGAGGAATTGATAAAAATAAAAATTTTCACTTTGTTTTAGT
CAATCTTTGATTTACTTAATTAGTTATACATCATTTGATGATGATTTTGT
GTTATTGCGTTCTAGTTGCCGCTCTGAAATTAGGAAATTTATAATCATAT
TTTTATTTGATTTTCTTAATTAAACTTTAGTTTTAAAAAAGAACTTTTGT
ATTTTGAAGCTATATTTTACTTGAAATAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056520-exon-scaffold_276-1575043694:714287..714486 | TCONS_00056520-exon-scaffold_276-1575043694:714287..714486 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1575043694:711901..712167 | TCONS_00056520-exon-scaffold_276-1575043694:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1575043694:709556..710740 | TCONS_00056520-exon-scaffold_276-1575043694:709556..710740 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1510915933:714287..714486 | TCONS_00056520-exon-scaffold_276-1510915933:714287..714486 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1510915933:711901..712167 | TCONS_00056520-exon-scaffold_276-1510915933:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1510915933:709556..710740 | TCONS_00056520-exon-scaffold_276-1510915933:709556..710740 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1491911889:714287..714486 | TCONS_00056520-exon-scaffold_276-1491911889:714287..714486 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1491911889:711901..712167 | TCONS_00056520-exon-scaffold_276-1491911889:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056520-exon-scaffold_276-1491911889:709556..710740 | TCONS_00056520-exon-scaffold_276-1491911889:709556..710740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:709556..714486 - |
Blast
The following BLAST results are available for this feature:
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