TCONS_00005149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005149
Unique NameTCONS_00005149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005149 ID=TCONS_00005149|Name=TCONS_00005149|organism=Clytia hemisphaerica|type=transcript|length=2594bp
ttattatttacATTTTGTGACGTTGAGTTGATGATAATTAGGACCAGACA
TTTGTTACTAGGTCAAGAGCTTAGTTTTAAGGGCTTAGAGCACGAAATTA
GATTATAATTAATGTTTTTGTCTTGAGAAAGACGTGAATAAGCCCGTATA
AGGAATTTTTGTTTATCGAAGGATCTAAGATAAACAGACGAGCATAGCGT
TCTATTTGGGTTTTATTGATCTGATTTGATGATAAGACGTGATAAGTTCG
TTCGCTATGTAGAAGTATCGCTAAGGAAGAGGTTTCGAAGTGTTGTCAAG
AAGCAAAAACAAGGAAAACTTTCTATGATCTGTGATTCTGAAACGTTCTA
AAATCAAGTGGTTTATGTCGAGATTTCAAAATGGATATTAGCAGGCCGAC
GTCAAAATATTTCGATTTCGATCACTTTATAGGGATGACTGGCAAAACAC
TTGGTATCACCGAATCCGCAAGTCTCTTCAACATGAAGGAGTTTTATAAG
TGGGAATTCAACGATGACGAAGAATCAGACGACCGCCACATCATTCATAA
ATGGTCGCGCGACCGCATCAAGAAAATGCACGGATTACGAAAATCGTACA
TGAGCTTTTTGGTGTATTCATTCCATTTAACAACATTGAAAAGTTTCATt
gagaatttcaatttcatggtGATCCTTCAGATGATCTTAGCTGCTGGTGC
CGTTTGGTTGTTCGATTATTTTGACATTTATTTCAATTTCCATATCGGAC
TGTTTGTTTCACCCATCGTATTTCCTCTGGCTTTCTCAATAAACACTGAC
TTTCAACGGAGAGAAAAGGTATTGGACGATTTAGCTAACTTTAAATCTTC
ATCCATGGTTTTCTTCTTTTGTATGAGGGAATGGAGAAGTGCTTCAGGTT
TGGAGGAAGCTTGGTTAAAAGACATCAAACAAAAGGTCCATAGTATGATG
TTCAACTTGAGAGAATATTTATTGACAGATAAAATGAAAAGACGTGACAT
TATAGCACGCATAATGTATGAGGACTTCAGTGATATTTCACAATTGATCG
AGAAAGTTCGCGCCAGCAAATTACCCGCCAATCCTGCCATTGTATCAAGG
TCCGTACATTTATTGAACATGTTATGTCTGTCATTCGAACGTTTACGAGT
CATTCGAGAATATCGATCTCCAAGATCCATTCGATCTTTCAACAAAGTGT
TAATTTTACTTTTACCCATAATCCTTTGCCCATATTTCGTTTATTTGGGA
CGATTGGGTAAGAAGGAGATTAGCATCGGAAACTGGGGGCCTTACTACAT
CGCAGTGCTCGTTGCAACAGTATTCGGTGCACTACAAGGAGTCCAAGACA
AATTGGACGACCCTTTTGATGGAATGTCAGAGGACGATATAAACTTGGAC
ACAATTGATGAATGGACTTTCAACTCCTTGAAGTCAGCTGCCGAGAGAAG
CATTTATACTATTGGTAGATTTCAAGTGAAGAAAGAACAGACCGAGAAAC
CACGATCGAAGAGTATTGTTCAAATGTTACACGAGTTAGAAGCTGAAGAA
TGCCCGGAGTCTGACTATGAAGCTCCAATTCTGAAAGCGTCGAAAAGCCC
GTTTAATAATCGGAAAACAGGGAAAAGCcttttcagaaaaagttttaatc
aaaaatcaaagagaCGCGCGGTCGTTCGAAGTCAGACGTTTACCGGCTCT
GATAAATGGAAGGAAGGACGTAAAAGGTTCAGTTCGACAACTTCACAAGC
GTGGGCCCCTGAAAATCACCCGTATGCAGAAGTTCTTGAGAAGATGTCAG
GTGACAGTCGTATTGAACGTAAACACACAGTACGTCACCACCCGATCGCA
GCACGGCAACAAAGTCATGAGCCGCATCCCACACCGAAAGATACGGACCT
TCAACGGAAAAGCGTCTCCGAAGCTTCTTTAAACACGATTCTCAAAAACG
AAAATGACCAAGACTCAGATACAGGTGAACATCGAAAGAGTTTGGGTGTA
AAGTTTCAAAACGAGACTGAGTTATTCACTTATGACGAACGAAATAGTTT
GAACAGTGGTTCCAACAGTCGGCTACCTCTtctaaatgaagaaaaagaga
aagaagaacAGGACAATCGCTTCAAAACGACGAAACTCGAAATGTCACCT
TTGAAAAACGGGGCACGATTTCATAAGAGTGTAGTACCCTCTATGAGCGT
GAATAGCGCTGATGATGAACTAACGCAAGTCATTGTGGATTCCAGCCCTC
CAACTAAAGAAGACAATGTCTTCGCttagatatttttttgaatttcttag
tTGACCTAAGTCCTTTATTTGGAATGTTTTTGAGcggtaattttgaattt
tgagaaGGTATGCTCCTTGTGAGAATTTTCACTTGTTTCTTGTTGTACTT
CACTTGCAAGCAAAGGATTTTGGATTTCTTAACCCGACAAACCGTAGTAA
CCTACTTATTCAAAACCTTTCAAGTCTGAACGAGTctgaaaaaatttctt
cctcACAGTTCACATCTTTTTGACGGTGGTATCAAAACCACAAAAAATTA
GTTTATTAATAAATTTCTTTTCCAAATACCACCTTGTTTGTATA
Run BLAST on NCBI

transcript from alignment at sc0000051:640178..643634+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005149 ID=TCONS_00005149|Name=TCONS_00005149|organism=Clytia hemisphaerica|type=transcript|length=3457bp|location=Sequence derived from alignment at sc0000051:640178..643634+ (Clytia hemisphaerica)
ttattatttacATTTTGTGACGTTGAGTTGATGATAATTAGGACCAGACA
TTTGTTACTAGGTCAAGAGCTTAGTTTTAAGGGCTTAGAGCACGAAATTA
GATTATAATTAATGTTTTTGTCTTGAGAAAGACGTGAATAAGCCCGTATA
AGGAATTTTTGTTTATCGAAGGATCTAAGATAAACAGACGAGCATAGCGT
TCTATTTGGGTTTTATTGATCTGATTTGATGATAAGACGTGATAAGTTCG
TTCGCTATGTAGAAGTATCGCTAAGGAAGAGGTTTCGAAGTGTTGTCAAG
AAGCAAAAACAAGGAAAACTTTCTATGATCTGTGATTCTGAAACGTTCTA
AAATCAAGTGGTTTATGTCGAGATTTCAAAATGGATATTAGCAGGCCGAC
GTCAAAATATTTCGATTTCGATCACTTTATAGGGTATGTAAGAAAAAGCA
TGGTTGTTGACTATGTAAAAGAGAAAGTATTTTTAATTAACTTTCGATCA
AACAATCTACCGGAATCTGCTTATATTTCAATGAAATGTGATTTGTCTTG
TGAGTTCAAGTTGATATCTTGTAGTAGAGATCAGATAGTTGTGGCTGTTT
AGTTTGGAGTGAGAGTGAGGCAATCGATACTACTGttttggagaattttt
tcaGGGAACTATGCAAATAAAGGAAGATAATGAGGCTGAAAGTCCAAATC
AAACCTTTCAGATTATATTCAGTTAACACGTTAATGTGAAAAACAGTACT
TTTCGAATATCAAAATACATTGTAAACTTTAAACCAGTTCTTAAAAGTTA
ATTTGAACACACTTGTTGAAGGAgggtttttcagaaaattatccAACCTG
aatttttgttgaaagtttGTGATAGATAGCCATGAGGAAGTAAGTGATTA
CTGTGTGTTCGACTTTGGATCGTAAGAAAGTGTTTGATGGGAAAATAGAA
AGATTATTGACTTTCACAGCAAAGAGATACTTGAAAAAATAGCGGAAAAT
GCCTTTCAGTCAAATTTGTACACcgacttttttctattgtttatatgTGA
CCTTAAAACGTCAAAGTAAACCTCAAACTGAGAAGGTTGGGATCTAGCTA
AAGGGAAATGCATATAATCTGGACAAAAGCAAAAGGATCAGTATAAATTC
AGGTCTTATTGAAATTATGTTGTGTCTTCTGAAATGAGCTTGGTACTGAA
CAAAATGTATTTATTTCTTGATAGGATGACTGGCAAAACCCTTGGTATCA
CCGAATCTNGTTTGGTACTGAACAAAATGTATTTGTTTCTTGATAGGATG
ACTGGCAAAACACTTGGTATCACCGAATCCGCAAGTCTCTTCAACATGAA
GGAGTTTTATAAGTGGGAATTCAACGATGACGAAGAATCAGACGACCGCC
ACATCATTCATAAATGGTCGCGCGACCGCATCAAGAAAATGCACGGATTA
CGAAAATCGTACATGAGCTTTTTGGTGTATTCATTCCATTTAACAACATT
GAAAAGTTTCATtgagaatttcaatttcatggtGATCCTTCAGATGATCT
TAGCTGCTGGTGCCGTTTGGTTGTTCGATTATTTTGACATTTATTTCAAT
TTCCATATCGGACTGTTTGTTTCACCCATCGTATTTCCTCTGGCTTTCTC
AATAAACACTGACTTTCAACGGAGAGAAAAGGTATTGGACGATTTAGCTA
ACTTTAAATCTTCATCCATGGTTTTCTTCTTTTGTATGAGGGAATGGAGA
AGTGCTTCAGGTTTGGAGGAAGCTTGGTTAAAAGACATCAAACAAAAGGT
CCATAGTATGATGTTCAACTTGAGAGAATATTTATTGACAGATAAAATGA
AAAGACGTGACATTATAGCACGCATAATGTATGAGGACTTCAGTGATATT
TCACAATTGATCGAGAAAGTTCGCGCCAGCAAATTACCCGCCAATCCTGC
CATTGTATCAAGGTCCGTACATTTATTGAACATGTTATGTCTGTCATTCG
AACGTTTACGAGTCATTCGAGAATATCGATCTCCAAGATCCATTCGATCT
TTCAACAAAGTGTTAATTTTACTTTTACCCATAATCCTTTGCCCATATTT
CGTTTATTTGGGACGATTGGGTAAGAAGGAGATTAGCATCGGAAACTGGG
GGCCTTACTACATCGCAGTGCTCGTTGCAACAGTATTCGGTGCACTACAA
GGAGTCCAAGACAAATTGGACGACCCTTTTGATGGAATGTCAGAGGACGA
TATAAACTTGGACACAATTGATGAATGGACTTTCAACTCCTTGAAGTCAG
CTGCCGAGAGAAGCATTTATACTATTGGTAGATTTCAAGTGAAGAAAGAA
CAGACCGAGAAACCACGATCGAAGAGTATTGTTCAAATGTTACACGAGTT
AGAAGCTGAAGAATGCCCGGAGTCTGACTATGAAGCTCCAATTCTGAAAG
CGTCGAAAAGCCCGTTTAATAATCGGAAAACAGGGAAAAGCcttttcaga
aaaagttttaatcaaaaatcaaagagaCGCGCGGTCGTTCGAAGTCAGAC
GTTTACCGGCTCTGATAAATGGAAGGAAGGACGTAAAAGGTTCAGTTCGA
CAACTTCACAAGCGTGGGCCCCTGAAAATCACCCGTATGCAGAAGTTCTT
GAGAAGATGTCAGGTGACAGTCGTATTGAACGTAAACACACAGTACGTCA
CCACCCGATCGCAGCACGGCAACAAAGTCATGAGCCGCATCCCACACCGA
AAGATACGGACCTTCAACGGAAAAGCGTCTCCGAAGCTTCTTTAAACACG
ATTCTCAAAAACGAAAATGACCAAGACTCAGATACAGGTGAACATCGAAA
GAGTTTGGGTGTAAAGTTTCAAAACGAGACTGAGTTATTCACTTATGACG
AACGAAATAGTTTGAACAGTGGTTCCAACAGTCGGCTACCTCTtctaaat
gaagaaaaagagaaagaagaacAGGACAATCGCTTCAAAACGACGAAACT
CGAAATGTCACCTTTGAAAAACGGGGCACGATTTCATAAGAGTGTAGTAC
CCTCTATGAGCGTGAATAGCGCTGATGATGAACTAACGCAAGTCATTGTG
GATTCCAGCCCTCCAACTAAAGAAGACAATGTCTTCGCttagatattttt
ttgaatttcttagtTGACCTAAGTCCTTTATTTGGAATGTTTTTGAGcgg
taattttgaattttgagaaGGTATGCTCCTTGTGAGAATTTTCACTTGTT
TCTTGTTGTACTTCACTTGCAAGCAAAGGATTTTGGATTTCTTAACCCGA
CAAACCGTAGTAACCTACTTATTCAAAACCTTTCAAGTCTGAACGAGTct
gaaaaaatttcttcctcACAGTTCACATCTTTTTGACGGTGGTATCAAAA
CCACAAAAAATTAGTTTATTAATAAATTTCTTTTCCAAATACCACCTTGT
TTGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002935XLOC_002935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005149-exon-sc0000051-1491911889:640178..640610TCONS_00005149-exon-sc0000051-1491911889:640178..640610Clytia hemisphaericaexon
TCONS_00005149-exon-sc0000051-1510915933:640178..640610TCONS_00005149-exon-sc0000051-1510915933:640178..640610Clytia hemisphaericaexon
TCONS_00005149-exon-sc0000051-1575043694:640178..640610TCONS_00005149-exon-sc0000051-1575043694:640178..640610Clytia hemisphaericaexon
TCONS_00005149-exon-sc0000051-1491911889:641474..643634TCONS_00005149-exon-sc0000051-1491911889:641474..643634Clytia hemisphaericaexon
TCONS_00005149-exon-sc0000051-1510915933:641474..643634TCONS_00005149-exon-sc0000051-1510915933:641474..643634Clytia hemisphaericaexon
TCONS_00005149-exon-sc0000051-1575043694:641474..643634TCONS_00005149-exon-sc0000051-1575043694:641474..643634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:640178..643634 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	1.30417	3.12888	1.32745	0	1.25375	0	0.309959	7.53372	4.77746	0	0	0	0	0	0	0	0	0.400241	0.963846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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