TCONS_00051715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051715
Unique NameTCONS_00051715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051715 ID=TCONS_00051715|Name=TCONS_00051715|organism=Clytia hemisphaerica|type=transcript|length=1572bp
ttcagtatgaaaaaaaagaatatcaaaatatcaaaaataactttaagGAA
TGGCTTCAAAGGAATGCACGATCAAAGACACACACGCATCAATAAAATGG
CTTGTGAAAATCAGCATCATTTATCACACATCCCTGGTGGTCTGTTCAGC
TCTGGTCAATATTCTATTCGAAGATTTTGATTCAAGTACTTGGACAACTG
AAGGAGAAGCGCAGGCTAGTCGTAGTGCTTCAATCACTAGCCTTGTTGTC
AAATTTGCTATCAATGGATTGACAAAATGGGATTCAGTCTATTTCAATCA
TATTGCTGGTAATTATGGTTATGAATATGAACAGATGCTTGCATTTGCAC
CTGGCTTTCCATATCTGGTTCATTGGATCCAATCTTGTTTAGAATTTATA
ATAGGTGCTAATAATGTGAATTCCAAGGCGGTTGGCATTGCCTTAAATCT
GATTTTCAATATAATTGCAACCGTTTTAATCTATAAATTAactcttaaaa
tttcaaatgttaaaagtaaaGTCAAGGATCGTTATGCAGTTGTGGCATCT
TTGGCTTTCATATTCAATCCAGCTAATATATTCATGATATCTAATTACTC
CGAATCTATGTTTGTTGCAGTACAATTTGCATTACTCTGGCTATTGGAGA
ATGAATCATTTTTCTTGGCATCTTTAATGGTCAGTATCTCTACCTTGGTT
AGATCTAACGGGCTACTAAATGTTGTTTTCTTAGTCTACTTTTACATCAA
AAGAATAATCACCAAAGaacaaatatttgaaaagtaTCAGTGTAAACACA
GCCTTGTGGAATGTCTGAAACCGTCGATCTTGTATTTACTTATCAAGTCC
TTTTACAAACATCTATTTATAATCCTTGTTTACACTACGTTGTCATTAAC
TCCATACTTGACCTGGCAGTATCATGTTTACAAAAGATTTTGCGAAATCA
CACACGTTGTGAGATCACACAATACCCACTGGTGCACTTATACGCTACCC
TTTTCATACTCCTATATTCAAAGCCATTATTGGAATGTTGGATTCCTGAA
ATATTTCACATTGTCACAAATTCCAAATTTTCTACTGGCAGCCCCGATAT
GTACCATCATATTTAGTGGCGTTTACCAAGTTTATACTCAAAACAAACAT
TCCAAAACTGATGTTTTACCTTGGTTAGGTTTAAAAGAAGTCCGATttca
ccttaaaaatgaagatgttACAATGTTACCAGCGGATAGAACCTTTGTTT
ATATGTGCCACGCCTTCTTTTTGACTGTCTTTGGTATTTTGAACGTTCAT
GTGCAGATTTTAACACGTATGATATGCTCTTCAACTCCATTTGTTTATTG
GTCTGTTGCAGAGTTGGTGACCAACCAAACGCTTGACAAATCTTTCAAAC
GAAGAGTCTTCTGTATTGTTTTAGGTTATTTTATTACGTACAATATTTTA
GGACTATTTTTACATACTAATTTTTACCCTTGgacttaaatttgaatttt
tatcattttagaaTAGTGCAATGTTTCAATAAGCTTTAGTAAGGTATATC
TTCGTCCAAATGAATGTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00051715-protein

>TCONS_00051715-protein ID=TCONS_00051715-protein|Name=TCONS_00051715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MASKECTIKDTHASIKWLVKISIIYHTSLVVCSALVNILFEDFDSSTWTT
EGEAQASRSASITSLVVKFAINGLTKWDSVYFNHIAGNYGYEYEQMLAFA
PGFPYLVHWIQSCLEFIIGANNVNSKAVGIALNLIFNIIATVLIYKLTLK
ISNVKSKVKDRYAVVASLAFIFNPANIFMISNYSESMFVAVQFALLWLLE
NESFFLASLMVSISTLVRSNGLLNVVFLVYFYIKRIITKEQIFEKYQCKH
SLVECLKPSILYLLIKSFYKHLFIILVYTTLSLTPYLTWQYHVYKRFCEI
THVVRSHNTHWCTYTLPFSYSYIQSHYWNVGFLKYFTLSQIPNFLLAAPI
CTIIFSGVYQVYTQNKHSKTDVLPWLGLKEVRFHLKNEDVTMLPADRTFV
YMCHAFFLTVFGILNVHVQILTRMICSSTPFVYWSVAELVTNQTLDKSFK
RRVFCIVLGYFITYNILGLFLHTNFYPWT
Run BLAST on NCBI

transcript from alignment at scaffold_202:1159063..1160634

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051715 ID=TCONS_00051715|Name=TCONS_00051715|organism=Clytia hemisphaerica|type=transcript|length=1572bp|location=Sequence derived from alignment at scaffold_202:1159063..1160634 (Clytia hemisphaerica)
GAAAAACATTCATTTGGACGAAGATATACCTTACTAAAGCTTATTGAAAC
ATTGCACTAttctaaaatgataaaaattcaaatttaagtcCAAGGGTAAA
AATTAGTATGTAAAAATAGTCCTAAAATATTGTACGTAATAAAATAACCT
AAAACAATACAGAAGACTCTTCGTTTGAAAGATTTGTCAAGCGTTTGGTT
GGTCACCAACTCTGCAACAGACCAATAAACAAATGGAGTTGAAGAGCATA
TCATACGTGTTAAAATCTGCACATGAACGTTCAAAATACCAAAGACAGTC
AAAAAGAAGGCGTGGCACATATAAACAAAGGTTCTATCCGCTGGTAACAT
TGTaacatcttcatttttaaggtgaaATCGGACTTCTTTTAAACCTAACC
AAGGTAAAACATCAGTTTTGGAATGTTTGTTTTGAGTATAAACTTGGTAA
ACGCCACTAAATATGATGGTACATATCGGGGCTGCCAGTAGAAAATTTGG
AATTTGTGACAATGTGAAATATTTCAGGAATCCAACATTCCAATAATGGC
TTTGAATATAGGAGTATGAAAAGGGTAGCGTATAAGTGCACCAGTGGGTA
TTGTGTGATCTCACAACGTGTGTGATTTCGCAAAATCTTTTGTAAACATG
ATACTGCCAGGTCAAGTATGGAGTTAATGACAACGTAGTGTAAACAAGGA
TTATAAATAGATGTTTGTAAAAGGACTTGATAAGTAAATACAAGATCGAC
GGTTTCAGACATTCCACAAGGCTGTGTTTACACTGAtacttttcaaatat
ttgttCTTTGGTGATTATTCTTTTGATGTAAAAGTAGACTAAGAAAACAA
CATTTAGTAGCCCGTTAGATCTAACCAAGGTAGAGATACTGACCATTAAA
GATGCCAAGAAAAATGATTCATTCTCCAATAGCCAGAGTAATGCAAATTG
TACTGCAACAAACATAGATTCGGAGTAATTAGATATCATGAATATATTAG
CTGGATTGAATATGAAAGCCAAAGATGCCACAACTGCATAACGATCCTTG
ACtttacttttaacatttgaaattttaagagtTAATTTATAGATTAAAAC
GGTTGCAATTATATTGAAAATCAGATTTAAGGCAATGCCAACCGCCTTGG
AATTCACATTATTAGCACCTATTATAAATTCTAAACAAGATTGGATCCAA
TGAACCAGATATGGAAAGCCAGGTGCAAATGCAAGCATCTGTTCATATTC
ATAACCATAATTACCAGCAATATGATTGAAATAGACTGAATCCCATTTTG
TCAATCCATTGATAGCAAATTTGACAACAAGGCTAGTGATTGAAGCACTA
CGACTAGCCTGCGCTTCTCCTTCAGTTGTCCAAGTACTTGAATCAAAATC
TTCGAATAGAATATTGACCAGAGCTGAACAGACCACCAGGGATGTGTGAT
AAATGATGCTGATTTTCACAAGCCATTTTATTGATGCGTGTGTGTCTTTG
ATCGTGCATTCCTTTGAAGCCATTCcttaaagttatttttgatattttga
tattcttttttttcatactgaa

Coding sequence (CDS) from alignment at scaffold_202:1159063..1160634

>TCONS_00051715 ID=TCONS_00051715|Name=TCONS_00051715|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_202:1159063..1160634 (Clytia hemisphaerica)
ttaagtcCAAGGGTAAAAATTAGTATGTAAAAATAGTCCTAAAATATTGT
ACGTAATAAAATAACCTAAAACAATACAGAAGACTCTTCGTTTGAAAGAT
TTGTCAAGCGTTTGGTTGGTCACCAACTCTGCAACAGACCAATAAACAAA
TGGAGTTGAAGAGCATATCATACGTGTTAAAATCTGCACATGAACGTTCA
AAATACCAAAGACAGTCAAAAAGAAGGCGTGGCACATATAAACAAAGGTT
CTATCCGCTGGTAACATTGTaacatcttcatttttaaggtgaaATCGGAC
TTCTTTTAAACCTAACCAAGGTAAAACATCAGTTTTGGAATGTTTGTTTT
GAGTATAAACTTGGTAAACGCCACTAAATATGATGGTACATATCGGGGCT
GCCAGTAGAAAATTTGGAATTTGTGACAATGTGAAATATTTCAGGAATCC
AACATTCCAATAATGGCTTTGAATATAGGAGTATGAAAAGGGTAGCGTAT
AAGTGCACCAGTGGGTATTGTGTGATCTCACAACGTGTGTGATTTCGCAA
AATCTTTTGTAAACATGATACTGCCAGGTCAAGTATGGAGTTAATGACAA
CGTAGTGTAAACAAGGATTATAAATAGATGTTTGTAAAAGGACTTGATAA
GTAAATACAAGATCGACGGTTTCAGACATTCCACAAGGCTGTGTTTACAC
TGAtacttttcaaatatttgttCTTTGGTGATTATTCTTTTGATGTAAAA
GTAGACTAAGAAAACAACATTTAGTAGCCCGTTAGATCTAACCAAGGTAG
AGATACTGACCATTAAAGATGCCAAGAAAAATGATTCATTCTCCAATAGC
CAGAGTAATGCAAATTGTACTGCAACAAACATAGATTCGGAGTAATTAGA
TATCATGAATATATTAGCTGGATTGAATATGAAAGCCAAAGATGCCACAA
CTGCATAACGATCCTTGACtttacttttaacatttgaaattttaagagtT
AATTTATAGATTAAAACGGTTGCAATTATATTGAAAATCAGATTTAAGGC
AATGCCAACCGCCTTGGAATTCACATTATTAGCACCTATTATAAATTCTA
AACAAGATTGGATCCAATGAACCAGATATGGAAAGCCAGGTGCAAATGCA
AGCATCTGTTCATATTCATAACCATAATTACCAGCAATATGATTGAAATA
GACTGAATCCCATTTTGTCAATCCATTGATAGCAAATTTGACAACAAGGC
TAGTGATTGAAGCACTACGACTAGCCTGCGCTTCTCCTTCAGTTGTCCAA
GTACTTGAATCAAAATCTTCGAATAGAATATTGACCAGAGCTGAACAGAC
CACCAGGGATGTGTGATAAATGATGCTGATTTTCACAAGCCATTTTATTG
ATGCGTGTGTGTCTTTGATCGTGCATTCCTTTGAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032746XLOC_032746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051715-proteinTCONS_00051715-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051715-exon-scaffold_202-1491911889:1159063..1160634TCONS_00051715-exon-scaffold_202-1491911889:1159063..1160634Clytia hemisphaericaexon
TCONS_00051715-exon-scaffold_202-1510915933:1159063..1160634TCONS_00051715-exon-scaffold_202-1510915933:1159063..1160634Clytia hemisphaericaexon
TCONS_00051715-exon-scaffold_202-1575043694:1159063..1160634TCONS_00051715-exon-scaffold_202-1575043694:1159063..1160634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1159063..1160634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86745	5.27957	2.88821	2.53733	3.12406	1.66427	1.84055	2.28703	1.22832	1.33129	1.92508	0.970775	0.917492	1.16856	1.46324	1.69717	1.1724	1.92267	0.359704	0.521176	0.981492	1.1416	9.81885	7.35304	1.81651	2.21979	0.999352	1.25699	4.73802	4.91559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007315PIG-V/Gpi18
Vocabulary: Molecular Function
TermDefinition
GO:0004584dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006506GPI anchor biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006506 GPI anchor biosynthetic process
molecular_function GO:0004584 dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
Blast
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BLAST of TCONS_00051715 vs. Swiss-Prot (Human)
Match: PIGV (GPI mannosyltransferase 2 OS=Homo sapiens GN=PIGV PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.052e-51
Identity = 158/529 (29.87%), Postives = 252/529 (47.64%), Query Frame = 2 
Query:   86 ASIKWLVKISIIYHTSLVVCSALVNILFEDFDSSTWTTEGEAQASRSASITSLVVKFAINGLTKWDSVYFNHIAGNYGYEYEQMLAFAPGFPYLVHWIQSCLEFIIGANNVNS-KAVGIA-LNLIFNIIATVLIYKLTLKISNVKSKVKDRYAVVASLAFIFNPANIFMISNYSESMFVAVQFALLWLLENESFFLASLMVSISTLVRSNGLLNVVFLVYFYIKRIITKEQIFEKYQCKH--SLVECLKP-SILYLLIKSFYKHLFIILVYTTLSLTPYLTWQYHVYKRFC------------------EITHVVRSHNTHWCTYTLPFSYSYIQSHYWNVGFLKYFTLSQIPNFLLAAPICTIIFSGVYQVYTQNKHSKTDVLPW----LGLKEVRFH--LKNEDVTMLPADRTFVYMCHAFFLTVFGILNVHVQILTRMICSSTPFVYWSVAELVTNQ-TLDKSFK--------------------------------RRVFCIVLGYFITYNILGLFLHTNFYPWT 1486
             S K +++ ++      ++  AL N +  D  +  ++    A     +     +V+  + GL+ WD+ +F  IA  +GY YE   AF PGFP  +      L  + G  ++ S   + +A LN +F ++A V ++ L   + +   +     +  A+L F  +PAN+F+ + YSE++F  + F+ +  LE    + + L+ + +T VRSNGL++V FL++                QC+   S +  L P   L+ L+ S +  +F      TL L P+  +QY+ Y +FC                  +   +   +   WC + +P  YSYIQ  YWNVGFLKY+ L Q+PNFLLAAP+  ++    +   T +        PW    LGL+  + +  L+  D+  L + + FVY+ HA  L +FG L +HVQ+LTR + SSTP +YW  A L+ +Q  L +S K                                  V   +LGYF+TY +LGL LH NF PWT
Sbjct:    6 PSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLA----PSGFVDQLVEGLLGGLSHWDAEHFLFIA-EHGYLYEHNFAFFPGFPLALLVGTELLRPLRGLLSLRSCLLISVASLNFLFFMLAAVALHDLGCLVLHCPHQ-----SFYAALLFCLSPANVFLAAGYSEALFALLTFSAMGQLERGRVWTSVLLFAFATGVRSNGLVSVGFLMH---------------SQCQGFFSSLTMLNPLRQLFKLMASLFLSVF------TLGL-PFALFQYYAYTQFCLPGSARPIPEPLVQLAVDKGYRIAEGNEPPWCFWDVPLIYSYIQDVYWNVGFLKYYELKQVPNFLLAAPVAILVAWATWTYVTTH--------PWLCLTLGLQRSKNNKTLEKPDLGFL-SPQVFVYVVHAAVLLLFGGLCMHVQVLTRFLGSSTPIMYWFPAHLLQDQEPLLRSLKTVPWKPLAEDSPPGQKVPRNPIMGLLYHWKTCSPVTRYILGYFLTYWLLGLLLHCNFLPWT 493
The following BLAST results are available for this feature:
BLAST of TCONS_00051715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGV9.052e-5129.87GPI mannosyltransferase 2 OS=Homo sapiens GN=PIGV ... [more]
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