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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005008 ID=TCONS_00005008|Name=TCONS_00005008|organism=Clytia hemisphaerica|type=transcript|length=1513bp
CATGGCACTCAGAGAGCGAAGCTCATACGTAGAAAACTTCACGAGTGTAT
TGTATATACTTGTATCACATGAGCTAGTCAAAGGCTAGAGACGAACCATC
AACCTTTTTAAAGCAAGCAAATGTGGTGCCTTTAAATTTGCGATGCATTT
CAGAAGACAGATCGAATATACcgttttcatttgttttggggttttgaatt
ttcaaattctggTGGTACATCTTGGTATTGATTGCAGTATGTCATTTCGC
ATTCCTCTTCAATGTAGCGGATGCTGAGCATGATAGACGATGTGTGTTCA
TCTGCAGGATGAGATTTAGTCATTGTGACCAGAAGAAGACTATCGACGGT
GCTCCTGTCGGCGGTGGACCAAAATGCGATAAGCCAGAATTACGGCAACA
ATGTGTCCAGGACTGTGGTCTGCGATTTAAGTTAGAGAACTTCTGTCGGG
GTAAAGGAAAATCCGACTCGTGGTGCCAAGGTGTCTTCAAAGGATACtta
aaagcaaaaatgaaaagtttactTTAAAAACTATGATATGGACACCAAAT
GAAATGTTTGCTAATTTTGAAAAGGGTAGTCATTTTGGATAAGGACAGGA
GAGAGGTGATTGGAGTGTATCATTTATCTTGCATCTTGCAATGAAGGGAC
AATTTTTGTTGTTCTTGACGACAGATTGACTTCTACTTTTTATCTTTACG
ATAATAAAAAATGAGCTGTTGTGTTGTCAAGAGAAGGGAAAAGAAGAAAC
AGATGGAAAACCAATGTATAAGTATAAGTATAAGTCCCAAGGGCTAGAAA
CGAATCTTTAacttttctcaggcaagaaaaaatgaagcctATGCGCTGTA
TTTTTGACAACGGATTTAATAtagcaattcttttgtttttgagtaatatt
tttttccgaaatttagcggtaaattttagtttcaaacTGGCATTTGTgca
aaaaccaggcgagccgctcaaggccgcgcaactttggtaggatttgttgg
cttcaaatcctaccaaggagattcgcttctaacccttcgggcttatactt
cattgtggAAAACCTATACAGTTCTGTATCAAGAAAAATGTCATAGTTTA
TAATATGTCGTTTAtgcttattcatgatattcatgacgtaatgttttcta
cggaaacaaccccgttttagccagtagtgggaaacattatacaacttttg
tctagtttaaatttgccactactggctaaaaccggggtttttccgtagaa
aacattacgtaatgaatatcatgaattctcaTCAGTGCAGTGAAACATCA
TCAAATGTTTTCAAGAATGCCATCTCCTTAATTATACTAATTTTCTAATC
TATGATTGTGGATATACCATTAATTAATATATTGTTATTTTAAATAATTC
ACATTGAATTGTTAGTGTGTAAttcttttggaatttttgaTCAAAAAATG
ACCTGCGTTCATTTATTGCTTGAAGTCCAAAGATTTGAATAGAAAAGTTT
CCTGATTTCgtcg Run BLAST on NCBI transcript from alignment at sc0000050:526292..528109+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005008 ID=TCONS_00005008|Name=TCONS_00005008|organism=Clytia hemisphaerica|type=transcript|length=1818bp|location=Sequence derived from alignment at sc0000050:526292..528109+ (Clytia hemisphaerica)
CATGGCACTCAGAGAGCGAAGCTCATACGTAGAAAACTTCACGAGTGTAT
TGTATATACTTGTATCACATGAGCTAGTCAAAGGCTAGAGACGAACCATC
AACCTTTTTAAAGCAAGCAAATGTGGTGCCTTTAAATTTGCGATGCATTT
CAGAAGACAGATCGAATATACcgttttcatttgttttggggttttgaatt
ttcaaattctggTGGTAAATGTTACTTCTAATCCAGCGTTTGTAGGAAAA
GCATGCAGACCGTGGGCACAACTTATGTAGGAAAAAAGTGTCTTCAGATC
CTATAGGAGATTTGAATTAACCACTTCAATATAAAGCTTAAAGAAGGCTA
CGTGCAATTTATGAGTGGATTAGAATCCCTACTTTTCTTTACATCCCAAA
AAACCGTTACTATTCAGCTCTATTTCCCTTGAGGTTTTGTTAGGCTTAAA
GTAATTTTAAACAGTTCACAGgaaagtaaaagtaaaacttAACGACTCAC
TATTTCTAATCTCTCATAGGTACATCTTGGTATTGATTGCAGTATGTCAT
TTCGCATTCCTCTTCAATGTAGCGGATGCTGAGCATGATAGACGATGTGT
GTTCATCTGCAGGATGAGATTTAGTCATTGTGACCAGAAGAAGACTATCG
ACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGATAAGCCAGAATTACGG
CAACAATGTGTCCAGGACTGTGGTCTGCGATTTAAGTTAGAGAACTTCTG
TCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAAGGTGTCTTCAAAGGAT
ACttaaaagcaaaaatgaaaagtttactTTAAAAACTATGATATGGACAC
CAAATGAAATGTTTGCTAATTTTGAAAAGGGTAGTCATTTTGGATAAGGA
CAGGAGAGAGGTGATTGGAGTGTATCATTTATCTTGCATCTTGCAATGAA
GGGACAATTTTTGTTGTTCTTGACGACAGATTGACTTCTACTTTTTATCT
TTACGATAATAAAAAATGAGCTGTTGTGTTGTCAAGAGAAGGGAAAAGAA
GAAACAGATGGAAAACCAATGTATAAGTATAAGTATAAGTCCCAAGGGCT
AGAAACGAATCTTTAacttttctcaggcaagaaaaaatgaagcctATGCG
CTGTATTTTTGACAACGGATTTAATAtagcaattcttttgtttttgagta
atatttttttccgaaatttagcggtaaattttagtttcaaacTGGCATTT
GTgcaaaaaccaggcgagccgctcaaggccgcgcaactttggtaggattt
gttggcttcaaatcctaccaaggagattcgcttctaacccttcgggctta
tacttcattgtggAAAACCTATACAGTTCTGTATCAAGAAAAATGTCATA
GTTTATAATATGTCGTTTAtgcttattcatgatattcatgacgtaatgtt
ttctacggaaacaaccccgttttagccagtagtgggaaacattatacaac
ttttgtctagtttaaatttgccactactggctaaaaccggggtttttccg
tagaaaacattacgtaatgaatatcatgaattctcaTCAGTGCAGTGAAA
CATCATCAAATGTTTTCAAGAATGCCATCTCCTTAATTATACTAATTTTC
TAATCTATGATTGTGGATATACCATTAATTAATATATTGTTATTTTAAAT
AATTCACATTGAATTGTTAGTGTGTAAttcttttggaatttttgaTCAAA
AAATGACCTGCGTTCATTTATTGCTTGAAGTCCAAAGATTTGAATAGAAA
AGTTTCCTGATTTCgtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005008-exon-sc0000050-1491911889:526292..526505 | TCONS_00005008-exon-sc0000050-1491911889:526292..526505 | Clytia hemisphaerica | exon |
| TCONS_00005008-exon-sc0000050-1510915933:526292..526505 | TCONS_00005008-exon-sc0000050-1510915933:526292..526505 | Clytia hemisphaerica | exon |
| TCONS_00005008-exon-sc0000050-1575043694:526292..526505 | TCONS_00005008-exon-sc0000050-1575043694:526292..526505 | Clytia hemisphaerica | exon |
| TCONS_00005008-exon-sc0000050-1491911889:526811..528109 | TCONS_00005008-exon-sc0000050-1491911889:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005008-exon-sc0000050-1510915933:526811..528109 | TCONS_00005008-exon-sc0000050-1510915933:526811..528109 | Clytia hemisphaerica | exon |
| TCONS_00005008-exon-sc0000050-1575043694:526811..528109 | TCONS_00005008-exon-sc0000050-1575043694:526811..528109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:526292..528109 + |
Blast
The following BLAST results are available for this feature:
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