XLOC_002838 (gene) - C. hemisphaerica

Overview
NameXLOC_002838
Unique NameXLOC_002838
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000050:521627..528109+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002838 ID=XLOC_002838|Name=XLOC_002838|organism=Clytia hemisphaerica|type=gene|length=6483bp|location=Sequence derived from alignment at sc0000050:521627..528109+ (Clytia hemisphaerica)
ggttgaaataaaagttggaggaaattttgaaattgatatAAAATGTTTCA AAGATGTGTTGTGAAACCACATAGCTGGTGTGTCTGTTCTGTGGATCAGA ACAGAATCTCATAGGAGATCAACCGCACACTAGAACTACAATCAAGAAAA CTCaacgaacaaaaaaaacatttaacacAAAATACTGGACTGAGAAAGAA ACACACCGAACAAAGTtgataatttgaaagaaaacacaCTATTCTTATTC AAGCACATTTACGGACAATTTACGGACGGCTGTTAATATCATCTAGAAGA TTATTTTTCCTACCCTTCTAATATACTCTGTTAGAAATAATTACTGCTTG TTAAAACGAAGAAGAGAGCAATCAACGATACAGTAGTCAGTAGAATATCA CAAGAAGAAACACAACGAAGAAATATCGTAATAGCAAACAGAGGTGGATT CCATAGGGACAATCTCTTTCATTCTACATACATTATTGAATAATCGATAT TGCCTTAAATGTTGGATGTGATATTTTGTTACTATATTACACTATCATAA ATCACGAGTTCGAGAAGAGAACACAATCCCAGCGCTACGAAAGAAAAGAC ATGGCGATCAGGTAAAGAATTTAATCTGTTTTAATTGCGACTGTTATATC TTATCGAAGCTTAAGGCAGGTATTCTTCTATGACACATCTAGGAGTTTAA GTTTTATACGCTAAAAGTTGGGAAAATCAGCTTGAATGGGCGAAGAGAAA GTTTTGGTTTTGAGAGGCCTTTTCATAGATtgtctcgttttgaaaccatt accaaggtgagGTGATTAAACTCCTTGAGTGCTCAATCGTTATTTGTATA AATATAGAGTAGACTTCTTAGgaactcctctgggaatcaattaccatagg AATATTTTGAACACGAGGCAAGAGTTGCtggtgacgtaatttatgaaaag gtctatatacACCTTGTATTTATTCTGACTCcattggagtttgaaaagtg gacgcTGTCAGGTACGAATGTTCGGTAAAATTGGGATCCTCTATTGTTTA TTTGCCACCCCAAAAGTTgtctaaaatgaccaaaagcCGAACTTGTCAGA TACACATCGtgaaattagtaaatttgggaccctgtaagctatcttcagag cctaaagaAGAGATCCTCACCAGCGGACCATCTCCGTTGTCAATTTTGAT GATTGTAGAAAtatcataattttatttgtcaGTAAAAAATTACACTACTG TCAGTTTCACGCTGAACGATTGTCAAGAACGATTGTAGAAATAAGGATTT TGGCGTCACGTTGCCAGTGAATATTAGATAAGAAAGTACGCGAGCTAAGC GGGGGAGAAATTCGGACTGAAAAACTGCTATTTTAGGGGAAGGAAAAGCG ACGCTAAAATGAGCGATCCAGTATCATTATGACACTTGTCATTCAGTTCC TCCAAAAATGTGGGAGGCATCATCCTGCCACCATACGTCACCTCACTACT GCTAAATTATCCCGCAAAAATCGAAAAGCTGTATCTTAGCGAAAtcttta ttttgttgttgagtgaCGTACTAAAGGGTCCAACGAAATAGGGGAAGAAT GATTTCAACACAAGAAATAAAACATTGTTATTTATAGAAAATAGCAACAT TCTTGATTAAAAGTATGAAGACGTGACAGGATAATTTCAATTGTTTCTCC TGACAAATAGACAATAACTTGATGACGAAAAAAGAAGAACATGGGAAGTC CACAAATAGTAAGGGGATGGAAATTAATTTGACTTGCGAGAGATATCCAT GATAAAATTTCCTTtaattttctataagaataatCGTATCAAAAATGTTA TTTCGAGAAATAAAAGAGTTTTTAAAgcaattcgatcttcaagggaacAA GAACTGTAtccgaattagagaaaaattcgaattacagagagtatttcATA TTGCTTTCCAACTGAAGGGACTAATTATTTACTTCGAAtcatagaaagat tcaaataatagaaaatCGAGTAAGTTCGCATTAGCGTAGATAGGAGggac gcaaaatttgtgtaggagagcagatttttatgacactgtgattatctatt cataatataaaagaataattacagtgtcacaaaaatctgctctccttcAC AAATTTTGaccttgtctacgctactggttGGAGAGTCTGCTGTAGTAATT TGAAGCTTTATAAGCCAAAACGTTTGCCAGTGTTTCTTACAATGTCAACT ACCGGAACGCCAACTGCATTCACGCACAGACATGAATAAAAGGGGAGGTG TATTCTCATTAGAATTCACATCATTGAAAATGAGGAAATCCTGGACATGT TGTCTTAGATATCCTCTCTCCACCTACACATCATGGATGAGATAATGTGT ATTGCACTAATATGACGCAAGAGAAGGATCTTTATATTATTCTTTACAGT TTCAAAGAGTGGACACTTAGCAGTATGTGTAGATTTTCTTATTAGACTAT GCATAGTCTAaaacgaatcactatctaagaaataagcccaaagccgaaga aaattcgcaagcggtttttttttgccgaaaagagtttacagtcggtagag tttgccagtcttcgaaactctcctgccgatttttttttccgtatacgacc atattttcccgcctttactatcactgtaacggacgatatcATCGTCCAAC TTTTTATATGACGTCagcaaataattttcaaatctgCGTTTTCAGGATAT TTTCTAGTTGCAGAAAAAGTGGATCTTGTACATTTTGCATTCATTGCCCT TGTAAAAGTGAGTGTTAGAGTCTTCAAGATGGGGTACTCCGAAAGGCACT TGTAAAGTTGTAACTTCACAGTGTTGCCGAATCAGAAGAAGTTTATACAG CCTATGCAGGTCTCACTTTGTTTTTGGCATTTGGTATTTTGAAAGGTAAG ACCATAGTGCATTCTTAAAGACTTGGAAATTTCCAAAATCCGGCAATATA CTTTCCTCTCTTTCGCTATTAACAAAGCTTAAAATGATCAACTCTTTACG AGTTATGAGAATGAAAAGTGTCAGAGTTTTTGCATTTCTAGTCCATACAC CTTTTCGCCCGTAGCCGCCCATTGCCGCGCGttcattttttaccacccta agGCCGTCCCAGTtattttttcgcacctatagacaataatagaaaaaaag actggggcgGTTTTATGGTGGTAagacggacaaaaaaatgcccacgcggc aattggcggctacggtcgaaaagttgTATTGCAGTCATGTGAATCCGTAT CTGTCGAGAAAGCGATTTTCCACAGTTTCCAAAGCCAGTCAGGTTAAAGA GAAATGGTTTTTCCAAATGACGTCAACCTATTCTTCTCAACATTCAGGAA CTTTGAAATATGTTCAATAAACTGCATTTAATGTAAAAAGAATGCTAAAT TTTAGGATGCGATTTGTTACATTTCATTTCAATGGAATGCACACAGACAA GGGAAATAATAGACCATACCCAAGTGACGTCAAACCATTCAGGAACTTTG CAaatgttttcaatttcattttcataaatATGACATCGCTTTTTTGTGTA GTTTTCAAAGACAAGGATATTCAGCTTTTCTTGGATTTCTATGgtatttc agtcccattcacaaattttgtaaaagttttaaaaaaggaAGAGTCCCACA ACGTAGGGTCTATTTTTTCGGACCTCAGCAGCACACTCCACTCGGTCGAC AAGGATAATACCCCCGGAAGTTCCAAGTGACGTGTTTCTAAAGGAGATGG ATTCTCCATAATGGAGGTAAAAGAAAAGTACCCACTAGCAGCAAATCCCC ACACCCCTTTTTGTCTAAGTCCCCCCCCATACCCGGGCCTGGAACACACC GTAAAATCAATATCTATTCTATTTAACACATAAATCGTCAAACAATGACG ATAAAAGGACAGAGACTCTTCTCTCTGTTATACAGTTGCTAAAGCCATCG TCATGACACAAAACCCGGTAAGATCGGATTCAACAAACGGGTTTCTCTCT CCAGGTTTCCGAGTTAAGACATTTCTTGTTGCTTAGAGAAACCCAAAATT GTCAAGTCAATGAAAATATGACATTAAAATAACATCcaaatataatttta taatgatAATCCTTCAAACCACAACCTTTGTGTTTCAATTAAAATGGAGA AGTGTTTGGCGGGTTAGAGCGCTAGTGTATTACATGGGTGAGCTTCGTAT TAAAGACATTGAGACATTCTATCGATTGATCCCACGTGTTGTAGGGACAA TCGGATCTTCAAACCCTCTTAACTGCATTGACATGAAAGGGGTCAGTAAT TTGAACCTCTGGTTTATACAGCAGTAGCAATTGCTTAGGAAGCCAGATAT GGTATAAACCCACAGGCAGAATTTGCGATGGTTTCTAAGCTAAAACAAGC AGGGAAACCACCACTGAAAGATATCCAGCCCTAAAAAACTACCACTCCGT AACttcaagttttcaaatatttgcgATTTCAAATTCGCGTACACACCCTA ACTAAGAAAAAATGCCAATCGCCTACCGGCGCAGGGCCGAAAAAATCTCG TAGGTATTATGCCAGTGGCACTTCAAGGGTTAACAACAGCAAACTGCTAT ACGTCACGATCTAAACATGGCACTCAGAGAGCGAAGCTCATACGTAGAAA ACTTCACGAGTGTATTGTATATACTTGTATCACATGAGCTAGTCAAAGGC TAGAGACGAACCATCAACCTTTTTAAAGCAAGCAAATGTGGTGCCTTTAA ATTTGCGATGCATTTCAGAAGACAGATCGAATATACcgttttcatttgtt ttggggttttgaattttcaaattctggTGGTAAATGTTACTTCTAATCCA GCGTTTGTAGGAAAAGCATGCAGACCGTGGGCACAACTTATGTAGGAAAA AAGTGTCTTCAGATCCTATAGGAGATTTGAATTAACCACTTCAATATAAA GCTTAAAGAAGGCTACGTGCAATTTATGAGTGGATTAGAATCCCTACTTT TCTTTACATCCCAAAAAACCGTTACTATTCAGCTCTATTTCCCTTGAGGT TTTGTTAGGCTTAAAGTAATTTTAAACAGTTCACAGgaaagtaaaagtaa aacttAACGACTCACTATTTCTAATCTCTCATAGGTACATCTTGGTATTG ATTGCAGTATGTCATTTCGCATTCCTCTTCAATGTAGCGGATGCTGAGCA TGATAGACGATGTGTGTTCATCTGCAGGATGAGATTTAGTCATTGTGACC AGAAGAAGACTATCGACGGTGCTCCTGTCGGCGGTGGACCAAAATGCGAT AAGCCAGAATTACGGCAACAATGTGTCCAGGACTGTGGTCTGCGATTTAA GTTAGAGAACTTCTGTCGGGGTAAAGGAAAATCCGACTCGTGGTGCCAAG GTGTCTTCAAAGGATACttaaaagcaaaaatgaaaagtttactTTAAAAA CTATGATATGGACACCAAATGAAATGTTTGCTAATTTTGAAAAGGGTAGT CATTTTGGATAAGGACAGGAGAGAGGTGATTGGAGTGTATCATTTATCTT GCATCTTGCAATGAAGGGACAATTTTTGTTGTTCTTGACGACAGATTGAC TTCTACTTTTTATCTTTACGATAATAAAAAATGAGCTGTTGTGTTGTCAA GAGAAGGGAAAAGAAGAAACAGATGGAAAACCAATGTATAAGTATAAGTA TAAGTCCCAAGGGCTAGAAACGAATCTTTAacttttctcaggcaagaaaa aatgaagcctATGCGCTGTATTTTTGACAACGGATTTAATAtagcaattc ttttgtttttgagtaatatttttttccgaaatttagcggtaaattttagt ttcaaacTGGCATTTGTgcaaaaaccaggcgagccgctcaaggccgcgca actttggtaggatttgttggcttcaaatcctaccaaggagattcgcttct aacccttcgggcttatacttcattgtggAAAACCTATACAGTTCTGTATC AAGAAAAATGTCATAGTTTATAATATGTCGTTTAtgcttattcatgatat tcatgacgtaatgttttctacggaaacaaccccgttttagccagtagtgg gaaacattatacaacttttgtctagtttaaatttgccactactggctaaa accggggtttttccgtagaaaacattacgtaatgaatatcatgaattctc aTCAGTGCAGTGAAACATCATCAAATGTTTTCAAGAATGCCATCTCCTTA ATTATACTAATTTTCTAATCTATGATTGTGGATATACCATTAATTAATAT ATTGTTATTTTAAATAATTCACATTGAATTGTTAGTGTGTAAttcttttg gaatttttgaTCAAAAAATGACCTGCGTTCATTTATTGCTTGAAGTCCAA AGATTTGAATAGAAAAGTTTCCTGATTTCgtcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005006TCONS_00005006Clytia hemisphaericatranscript
TCONS_00005007TCONS_00005007Clytia hemisphaericatranscript
TCONS_00005008TCONS_00005008Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005007-proteinTCONS_00005007-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:521627..528109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.67 0.33 0.48 0.25 0.74 0.91 42.42 46.16 65.53 52.75 25.98 59.9 1.57 1.72 11.13 6.99 1 2.78 0.36 0.11 0.74 0.76 0.19 0.45 0.46 0.76 0.35 0.98 0.44 0.38