TCONS_00051020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051020
Unique NameTCONS_00051020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051020 ID=TCONS_00051020|Name=TCONS_00051020|organism=Clytia hemisphaerica|type=transcript|length=1109bp
CCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATT
CAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAATGGCATC
TACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTT
ACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAATCTCAG
CCAATTACCTTACTCTTATTGGATATCCCACCAATGATGCCAGTCTTGGA
AGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTTACTTCATGAAG
TCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGATGCTGCC
ATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCT
TTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATC
AATACGCAAAGAAGACGGTCAAGattttggTTGTAGGAAACCCAGCAAAC
ACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAA
TTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTTCACAGGTTG
CAATGAGACTCGGTATCAAAACATGTGACGTCAGCAAGGTTATCATTTGG
GGAAACCACTCATCCACACAATACCCTGATGTTCAACACGGGTTCGTCAA
TCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTGTTAAAGATGATAATT
GGATTCAAGGAGAATTCTTAAGGACTGTTCAAACGCGTGGTGCGGCCATC
ATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTG
TGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATGA
GCATGGGTGTTATCACTGACGGCACACATTACGGAATCCCTGAAGATATC
GTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATACACAATCGT
CGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAG
CTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAG
GAATGAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_192:47912..53249-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051020 ID=TCONS_00051020|Name=TCONS_00051020|organism=Clytia hemisphaerica|type=transcript|length=5338bp|location=Sequence derived from alignment at scaffold_192:47912..53249- (Clytia hemisphaerica)
CCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATT
CAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAATGGTAAG
ATTCTTTTTATTTTCGTTTGATTTTTCTTGATAAAAAACTGGACAGTTTG
CGTTTACAACCCACGATATGGCCAGAAAATAACTCAAACAATTTTGGTTT
TTGTTTGGGCCAACAGCAAAACATTCTTTTGGTCCAAATATTGATGTTTT
ATGTCCAAGTTTGGGTCACAAAAAGTTTTATTTTTAACTCCAAAAGCCCA
GCCCAAACACGTCTCAACACGAATATACACAGACCAGTTCAGACCATAAA
ATATGACCCATATAAACACGCACACAAAACTTTTGAAATTTTCGCCTCTG
AATGAAAAACTACTAACTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTT
CAAAATCCCCAAGGGGTTGTGGTTGTGGGAATCATATGACGTTTTGCTTT
TCTGCTTCTTTTGCACCTTCATCTTCCCATTGGGCTATTCCATTTTTAAA
CCATACAGGGGTATTGACGAACTTTTCCAGGGGGGTCTGAGCCTTGATTT
TCCAGGGGGTTCTCTCCTCCTAAACTGGCATCAATAGACCTTTTCGCCTT
TCCGTCCGCCATCTTGAATTGTATGCAAAAATACAGGAACAAAAATGTCG
TGGTTGGATTTAGTTGAAATGTATGCAAAACATATGCAAGTTTACACAAA
GATTAAAAAGACAACAAAGCATCTTATAAATAAATATTATAATCATTANG
GCCGATGGCTTTTTCCTTTTTCACAAAATTTCACTTTCCATCCAGGCGTG
TCGACCTAATTTTCCAGGGGATAGTTTGTTATCCAAAATTTCCAGGGGGG
TTAGTGAAAAAAGTTTGTCAATACCCCCTGTATAATTTTTTTTTGGAATA
GCCCAATATTGTATTTGAATTTTCTGGATTTTTCAATTTTTGGTTTAAAT
TTTTTTAAACAATCAGCACTCAGGAAGGTCAAAGTTTGCCAGAGGACATG
GTCCATCAGATGACATAGGTGTGTCGCCCTATTTGGTCAGAAAAATAAAA
AATAAATATAAAAACTCTTTAAAAAAGTTATTTTTAACTTCCTACGAATT
TCCATTTTATTTATTACAAATTTGGCTTCGAAAACACTATTTGATATTCC
CTGGAGCAGCACAAACTTGTTGAACTGAATTGGGTTATAAAACTGATCAA
ACACTCACGATTTTTTACAAAATTTCAATTATTGATTTATTACTGTGAGA
TCGGGTAACTTGCATCAGTGGAGGCTAACATGCATTGCCATCAAATGAGT
GACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACACAGCTCCGC
TCGCAATCTACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTATTA
AGTCATTCATTTGAGGGCTATGCATGTTTGCCTCCAATGATGCAAGTTAC
CCGATCTCACGGTAAATGTCAAGAGTTGGGTCAAGCTTGATTTAAAGATT
AGTTCAATAAGTTTGATTGATCGTGACTTCACTTTTTTTATAGGCAAAAG
CTTGTTAATCCTCGTTAATCCTGGGTCAGAGCAGGATTAATATTTGGCCA
ATTTAATCAGAATTTAATCCAGATTTAAGCCTATTTTTTTTCGAACAACT
GACGATTCTGCATTAATCGGCGCTAACAGGCGCTAATCGAGATTTAATCG
AAAATTAAGCTAATCGGCCGCTAATCCACTTTTGAACAACCGTGCCCTTG
ACAATAAAAATTGAGTTTTGAATTCTTTTATATTTCAGGCATCTACTGAA
CCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCT
CTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAATCTCAGGTTGGTC
TTATTGATTATTTTGTTATAATAGAAAGTTTTAACATTTTAAATTGATGT
TGATACTTCATATCAATCAAATAATCCTGTTCTAAGCAATGATCAGTCTA
CATCATTCTCCATACCCTCAAGAGAGTCAAAAAATATTGTGTCTGATATT
TCCCTGTTCTCTTTTTATTCTAGCCAATTACCTTACTCTTATTGGATATC
CCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAATTACAAGATTG
CTCTCTTCCCTTACTTCATGGTAAGTTCAGCCATCGTTATCATCAAAAAT
TAAGAATTGTTTTTATTTATTTACTAAACAGTTGGTTGACAAGTCTTTGG
CATTCGATTTTTTTTGTGAAATGGTTTGGTTTTTAATCTCTCTTCTCCTA
ATTAGAATTCTTCAATTTTACTAAAATAACAAGAGAATTTTGAAGGAGAG
TTTTTGGTATTTATCGTAATCTGTTTAATGTTTATTATTTGTAGAAGTCG
TTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGATGCTGCCATC
TTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTT
GAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAAT
ACGCAAAGAAGACGGTCAAGGTACATTTTTCTTTACTTCCTCTTCCCATG
ATAAATGTAAACAACATTGTGACAAATTGCACTTCTTGTTTGTTGGCCAC
AATATCCTTCCTCTATTCTTGAACAACAAGATTCGAACTCCTCCCTAGTA
ATGCCCCTCTTCAGCCCCTCTCAATCCCCGATCAAATTTCAATATTTTCT
TAACTTTTTTTAATGGATATGTTGTAAAAGATTTTTTAGAATGTAACCGT
CAATTCTTTTCATTTCATTTAAAAAATATTTTACCTGTAAGTTAATTAAT
TTAATGTTTCTTACTTTTTCTTTAGATTTTGGTTGTAGGAAACCCAGCAA
ACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAA
AATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTTCACAGGT
AATTTCGTTATCTGGGTTCAAGATTTAGAAGATTATGAAATTTTATTAAA
AGCATAATACGTTAGACAGTTTTTGGGCCGTTCAAAACTTGCTTTATTAA
ATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTAT
CATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACT
TTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAAC
ATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCACACAAT
ACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCA
ATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAG
GGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTA
AGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACA
AAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGG
TTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATA
GAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATTTCAACTACCGT
CGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAA
CTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAAT
TAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTTTAAAAAAACAT
ATTTCATATGACACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGA
CTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGT
GCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTT
CGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCA
CACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATC
GGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTT
CTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAG
ATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAANACTTGCTTTAT
TAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATC
TATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACCAGAAATAG
ACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTCGGTATCAA
AACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCACAC
AATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTC
CCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATTCTT
AAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCTAAGACTGC
CTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAGGGGGCGGT
ACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTTGCTCGACG
AGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGAT
ATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATTTCAACTAC
CGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAAAGAAACAG
AAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGCATGAAGAG
AATTAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTTTAAAAAAA
CATATTTCATATGACACATTTAATAATCCTGCATAACTTCCTGTTTTTAT
AGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCA
AGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTG
GTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCACTGACG
GCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACG
ATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATCAATGC
CTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAA
GAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051020-exon-scaffold_192-1575043694:53155..53249TCONS_00051020-exon-scaffold_192-1575043694:53155..53249Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:51307..51411TCONS_00051020-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:51030..51126TCONS_00051020-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:50630..50805TCONS_00051020-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:50202..50324TCONS_00051020-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:49799..49975TCONS_00051020-exon-scaffold_192-1575043694:49799..49975Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1575043694:47912..48247TCONS_00051020-exon-scaffold_192-1575043694:47912..48247Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:53155..53249TCONS_00051020-exon-scaffold_192-1510915933:53155..53249Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:51307..51411TCONS_00051020-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:51030..51126TCONS_00051020-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:50630..50805TCONS_00051020-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:50202..50324TCONS_00051020-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:49799..49975TCONS_00051020-exon-scaffold_192-1510915933:49799..49975Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1510915933:47912..48247TCONS_00051020-exon-scaffold_192-1510915933:47912..48247Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:53155..53249TCONS_00051020-exon-scaffold_192-1491911889:53155..53249Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:51307..51411TCONS_00051020-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:51030..51126TCONS_00051020-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:50630..50805TCONS_00051020-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:50202..50324TCONS_00051020-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:49799..49975TCONS_00051020-exon-scaffold_192-1491911889:49799..49975Clytia hemisphaericaexon
TCONS_00051020-exon-scaffold_192-1491911889:47912..48247TCONS_00051020-exon-scaffold_192-1491911889:47912..48247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:47912..53249 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66897	1.0173	0.912327	8.66061	0	0	0	0	0.00366375	0.423739	0.0632203	0.00082728	0.000298408	2.18505e-05	0.0215813	0.00036623	0.090986	0.000458993	3.91664e-08	2.02404e-08	0.267424	5.95204	1.34486	2.09568	0	0	0.135423	0.038669	0.28932	2.68193
Blast
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BLAST of TCONS_00051020 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 492.656 bits (1267), Expect = 2.792e-174
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 3 
Query:  102 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1094
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC2.792e-17469.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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