TCONS_00000632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000632
Unique NameTCONS_00000632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000632 ID=TCONS_00000632|Name=TCONS_00000632|organism=Clytia hemisphaerica|type=transcript|length=3062bp
NNGATCGAACTGAACTTGACCTCCCGTAATTCAGACAACAAAGAAAAATG
GATCGAAAAAATACGATTGAACAATGAAAAAGACACCATATATTTAAGTT
TTATATGCAGATATATTGACGATTTGTTTCCTGCGTATAAATTATTGGCC
TCCTATATACGTTACCTCTCTGGCATGTGCAAAAGCGGATCAAGTACTTA
TCGACGGTACTTATTGGCCTCTTCCAGATAGTtttcgtacatgggggtgg
aggatatagtgtctgggggggggtagtgaaaaatctacaaaatttgcctt
gtccgggggagggggtaaacttgctctgtttctgtttgggggtaattttg
aatgtccaggtggtcaactgatgcttgtccgggggattatacctgctgtc
cgggggtcaaaaaTCACAATGCCCGGggagtaaatttccaaaaaatgtta
tatcctccacccccatattcaaattttttctggaaaagcccttcAGGAAT
ATTGATTTCCAGAGATGATATCGATCAGGGTTTAAACAAAGAAGCTATTG
TATATTGTTACTTTGCCACGAACACCGTTCAACCAAACCCTTTCTGTGGA
ATTTCCAGGTTAAAAAGAAAGTCTGTTTCAGCAGAATTGACTGTCCACAC
AGTTTAATACATTGCTCTTAGAGTaaaaaagatataatcaaaagtaatag
cacccctgtctcacaaccccggtgaaactttttcctacagcggggataaa
aatttcgatcgaaatctcaatggggataaaaatactATTGTTCCAACGTT
AAAAATTCCAGtgtggatggttttggagtacaatctctaaacaatgaatt
tcgaatggggatgaaatcaaagtcaatttctcagttgggctgaaattcta
gggtatttttcccaccgggtacgaaatttttgccaaattttccagtggga
aaatAGCGGGTCTGTTACACAGGGGTGTGTAATTACCTTGTTGGAAAGAT
AGTCAAATTCTGAACATATGCGTTAAAGATTATAGAGCTAATCGTACCAA
TTCTGTACCATGGGCAGTCACGCCCtgtggtttaactcactaaaaacTTT
TGTTGACATTGAGCACGCGCAATTAAtctttagtgagttaaaccaacCTC
GTCACTTCGTGGCAAAGAATTTGCTATTTTGATCCTAAGAGTCTAGTAGT
ACCTTTTTTGATATCTAAAACACCAGATATTTGGGATGAGGAAGGTCGTT
GTACAGATTAGAAAAGATGGCCATATGacttaatttttcacaaaggGAAG
TATATTGGCAATTTATATAGgaaatttaagaaatataaagaaaattaaat
gcAAAATTTTGTACAGTTTATTATTACTAGAGCGCTTTAACCCCTTTACC
ATTtactattattttttctttgttttttatacaTTATTATAACTGAAAGA
TTTAAAActaatattttattattatatataggaaaataatttttttcata
ccttTTTGATGGAatagttttaaaaattaattttgtcttTATGTGTAGAA
GAATTTCTTTTAtaactttcaaaatttagcTCCTTGATTTGCAACAACTT
AATTTAATTACGTGTCATACAGGGTGTCCGAANgctgaaattctagggta
tttttcccaccgggtacgaaatttttgccaaattttccagtgggaaaatA
GCGGGTCTGTTACACAGGGGTGTGTAATTACCTTGTTGGAAAGATAGTCA
AATTCTGAACATATGCGTTAAAGATTATAGAGCTAATCGTACCAATTCTG
TACCATGGGCAGTCACGCCCtgtggtttaactcactaaaaacTTTTGTTG
ACATTGAGCACGCGCAATTAAtctttagtgagttaaaccaacCTCGTCAC
TTCGTGGCAAAGAATTTGCTATTTTGATCCTAAGAGTCTAGTAGTACCTT
TTTTGATATCTAAAACACCAGATATTTGGGATGAGGAAGGTCGTTGTACA
GATTAGAAAAGATGGCCATATGacttaatttttcacaaaggGAAGTATAT
TGGCAATTTATATAGgaaatttaagaaatataaagaaaattaaatgcAAA
ATTTTGTACAGTTTATTATTACTAGAGCGCTTTAACCCCTTTACCATTta
ctattattttttctttgttttttatacaTTATTATAACTGAAAGATTTAA
AActaatattttattattatatataggaaaataatttttttcataccttT
TTGATGGAatagttttaaaaattaattttgtcttTATGTGTAGAATTTCT
TTTAtaactttcaaaatttagcTCCTTGATTTGCAACAACTTAATTTAAT
TACGTgtcatacagggtgtccggaaaaaagtatcgagtcgtaccacttct
atagaaagaaatttttttgtgtgtgtttcactaaatttgcaatgtttatc
aaagtttctttctgtgtcatattaattaTTGTCATGAGACATATTTTATG
Aataataacttttacaaaaaacaattctcaataactttaacgtcatgaaa
atggtaaaggaagttaattctttttaatcataatgactggtgtaaaaata
attgtgttggtatatattttcttacattttgttaaacacacgcaacaacc
ttctactcagaatcatgttcgaactcgatacttttttccggacaccctgt
actgTAATTGTCTTACGAGTTAGCAAACTTGTCGTAAATATTTTCAGCCT
CTTAAAAGTCACTCGGGAGATTAAAGGTGGtaaattttataatttgaaaa
tccttttttaccattaaacttttttcttcattatatttTTACTACCTCTG
AAATCACTATTGCcttcttttttgtaaaatattttttatattatgttaaa
cgctaaaagaatatttatttttctaaaataattgAAGTTGATCTACAAAC
TTTTATCCTCATCAAaacttttgttattttatttgaATGTCTTTTGTTGT
AAAAAACGTGGTTATTGACTccactaccttatcggccaaaacttagtcgg
cctttattttag
Run BLAST on NCBI

transcript from alignment at sc0000002:499652..502713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000632 ID=TCONS_00000632|Name=TCONS_00000632|organism=Clytia hemisphaerica|type=transcript|length=3062bp|location=Sequence derived from alignment at sc0000002:499652..502713 (Clytia hemisphaerica)
ctaaaataaaggccgactaagttttggccgataaggtagtggAGTCAATA ACCACGTTTTTTACAACAAAAGACATtcaaataaaataacaaaagttTTG ATGAGGATAAAAGTTTGTAGATCAACTTcaattattttagaaaaataaat attcttttagcgtttaacataatataaaaaatattttacaaaaaagaagG CAATAGTGATTTCAGAGGTAGTAAaaatataatgaagaaaaaagtttaat ggtaaaaaaggattttcaaattataaaatttaCCACCTTTAATCTCCCGA GTGACTTTTAAGAGGCTGAAAATATTTACGACAAGTTTGCTAACTCGTAA GACAATTAcagtacagggtgtccggaaaaaagtatcgagttcgaacatga ttctgagtagaaggttgttgcgtgtgtttaacaaaatgtaagaaaatata taccaacacaattatttttacaccagtcattatgattaaaaagaattaac ttcctttaccattttcatgacgttaaagttattgagaattgttttttgta aaagttattatTCATAAAATATGTCTCATGACAAtaattaatatgacaca gaaagaaactttgataaacattgcaaatttagtgaaacacacacaaaaaa atttctttctatagaagtggtacgactcgatacttttttccggacaccct gtatgacACGTAATTAAATTAAGTTGTTGCAAATCAAGGAgctaaatttt gaaagttaTAAAAGAAATTCTACACATAaagacaaaattaatttttaaaa ctatTCCATCAAAaaggtatgaaaaaaattattttcctatatataataat aaaatattagTTTTAAATCTTTCAGTTATAATAAtgtataaaaaacaaag aaaaaataatagtaAATGGTAAAGGGGTTAAAGCGCTCTAGTAATAATAA ACTGTACAAAATTTTgcatttaattttctttatatttcttaaatttcCTA TATAAATTGCCAATATACTTCcctttgtgaaaaattaagtCATATGGCCA TCTTTTCTAATCTGTACAACGACCTTCCTCATCCCAAATATCTGGTGTTT TAGATATCAAAAAAGGTACTACTAGACTCTTAGGATCAAAATAGCAAATT CTTTGCCACGAAGTGACGAGgttggtttaactcactaaagaTTAATTGCG CGTGCTCAATGTCAACAAAAgtttttagtgagttaaaccacaGGGCGTGA CTGCCCATGGTACAGAATTGGTACGATTAGCTCTATAATCTTTAACGCAT ATGTTCAGAATTTGACTATCTTTCCAACAAGGTAATTACACACCCCTGTG TAACAGACCCGCTattttcccactggaaaatttggcaaaaatttcgtacc cggtgggaaaaataccctagaatttcagcNTTCGGACACCCTGTATGACA CGTAATTAAATTAAGTTGTTGCAAATCAAGGAgctaaattttgaaagtta TAAAAGAAATTCTTCTACACATAaagacaaaattaatttttaaaactatT CCATCAAAaaggtatgaaaaaaattattttcctatatataataataaaat attagTTTTAAATCTTTCAGTTATAATAAtgtataaaaaacaaagaaaaa ataatagtaAATGGTAAAGGGGTTAAAGCGCTCTAGTAATAATAAACTGT ACAAAATTTTgcatttaattttctttatatttcttaaatttcCTATATAA ATTGCCAATATACTTCcctttgtgaaaaattaagtCATATGGCCATCTTT TCTAATCTGTACAACGACCTTCCTCATCCCAAATATCTGGTGTTTTAGAT ATCAAAAAAGGTACTACTAGACTCTTAGGATCAAAATAGCAAATTCTTTG CCACGAAGTGACGAGgttggtttaactcactaaagaTTAATTGCGCGTGC TCAATGTCAACAAAAgtttttagtgagttaaaccacaGGGCGTGACTGCC CATGGTACAGAATTGGTACGATTAGCTCTATAATCTTTAACGCATATGTT CAGAATTTGACTATCTTTCCAACAAGGTAATTACACACCCCTGTGTAACA GACCCGCTattttcccactggaaaatttggcaaaaatttcgtacccggtg ggaaaaataccctagaatttcagcccaactgagaaattgactttgatttc atccccattcgaaattcattgtttagagattgtactccaaaaccatccac aCTGGAATTTTTAACGTTGGAACAATagtatttttatccccattgagatt tcgatcgaaatttttatccccgctgtaggaaaaagtttcaccggggttgt gagacaggggtgctattacttttgattatatcttttttACTCTAAGAGCA ATGTATTAAACTGTGTGGACAGTCAATTCTGCTGAAACAGACTTTCTTTT TAACCTGGAAATTCCACAGAAAGGGTTTGGTTGAACGGTGTTCGTGGCAA AGTAACAATATACAATAGCTTCTTTGTTTAAACCCTGATCGATATCATCT CTGGAAATCAATATTCCTgaagggcttttccagaaaaaatttgaatatgg gggtggaggatataacattttttggaaatttactccCCGGGCATTGTGAt ttttgacccccggacagcaggtataatcccccggacaagcatcagttgac cacctggacattcaaaattacccccaaacagaaacagagcaagtttaccc cctcccccggacaaggcaaattttgtagatttttcactacccccccccag acactatatcctccacccccatgtacgaaaACTATCTGGAAGAGGCCAAT AAGTACCGTCGATAAGTACTTGATCCGCTTTTGCACATGCCAGAGAGGTA ACGTATATAGGAGGCCAATAATTTATACGCAGGAAACAAATCGTCAATAT ATCTGCATATAAAACTTAAATATATGGTGTCTTTTTCATTGTTCAATCGT ATTTTTTCGATCCATTTTTCTTTGTTGTCTGAATTACGGGAGGTCAAGTT CAGTTCGATCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000378XLOC_000378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000632-exon-sc0000002-1491911889:499652..502713TCONS_00000632-exon-sc0000002-1491911889:499652..502713Clytia hemisphaericaexon
TCONS_00000632-exon-sc0000002-1510915933:499652..502713TCONS_00000632-exon-sc0000002-1510915933:499652..502713Clytia hemisphaericaexon
TCONS_00000632-exon-sc0000002-1575043694:499652..502713TCONS_00000632-exon-sc0000002-1575043694:499652..502713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:499652..502713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.673095 0.493394 0.584632 0.469601 7.50317 4.82526 6.50498 7.15101 2.97018 4.66931 2.46902 2.60501 3.57631 2.75613 1.61989 1.55891 2.43701 2.09769 3.64554 3.59102 5.65656 5.58113 2.2201 2.38813 2.5103 2.97768 3.6911 1.91245 1.50889 1.24249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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