TCONS_00005020 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005020
Unique Name	TCONS_00005020
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2337

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000050:21887..27397-

transcript sequence

>TCONS_00005020 ID=TCONS_00005020|Name=TCONS_00005020|organism=Clytia hemisphaerica|type=transcript|length=2337bp
CACGATTTAGGCTATTTAAAAAGTctctgaaatttttattacttaTTGAG
TCTCCTGATGTTTCACTTTAGAAATTAGTATTTTGATAACTCTCGATAAC
TTTTACTATCAAAGGAATAAATTACTTTACAACCCCCGTCTCGATTTGCA
ATGATTATAGGTATATTCCCAAGCTACTCAAAAGTGTCAATGACATTTGT
GTTCATTCAGAAAGCGcgacaaagaaaacaaaaccaCAAACAAGCCTTTT
GAGGATAACTGCCCCAATTTCTCATGCATGGATAGATTTTATAATTGAGG
GATCTGCACTTGAATTTGACACATCAGAAGAAAACAGAGAAACGAACGTT
GTTGGTCATCAAAGATAGTAAAGGAGTGGCAAAATTTGTTAGAAAATGGC
TGATGTTGTAAAGTACGGTATCCAAATTCCTAATCGTGTTTTTGTCGGTG
GAGTTGCCTTTGACACAAAGGAGGATGAACTGAAGGGCTTTTTTCAACAA
TATGGAAAAATCAAGGAATGTAAAATTATCAAAGACAATCAAAGCATCAG
TCGAGGATTCGCATTTGTTACGTTTGAGAGCAAACATGACGCAATTCAAG
CTCAACAAaagggCACAGTATTTTTCAATCAGAAAAAGTTGAACTTGGGT
CCTGCTATCAGGCAAAAGGGAGTCGTGTTCAATGGAACCAAGGAAGCAGG
AAATGATCCTGTGCTCTCAACTGGAGTTTATATCCATCCCAGCGGATATT
CTTATACAGTTGCTCCAAATGGTGTGTGGTATTTTCACAAACCAGATGGC
TCGCCACCTTCGACAGCCCCTGGCGCACCACCTATGGCTTATACACCAAC
AACAATGCAAAAAATAGCCTCGCAAAGTTCTCCCACCTCTACCAAAGCAT
CTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGATGAAAACAGAGCAAAT
ACTACTGTTACTCATTCCAATATGCCAATTTATCAAAACCCTGGAGTCAT
CCAAGAACCAGTGCAAATACCTCAGACTACAATTCAACCAGATATCCACT
ACCAGCCAACAAGCTATGTTCAACATACTCATTCAACTTTTGGAGGATCA
AATATCCATGTTGCTTTTCAAAACATGTCCATAACTACTCATCCACAAAC
AACGCCCATTCCAGTTGGCCCAGCCGCTCAGATGACTGTTCCACTCACTA
TTCCTCCCTCCTCGGAGCATATACCTGCTGATATGAATGGTGGTCATAAT
CCTGGTTTTAATTATGTTAACGAATCATGCATGCCATATTACCCAAATGG
AAAATATTGTAGTCAGGGTTCTCAGACAGGTGCTATTCCAGCCGATCCAT
CCAGACCAGTTCCATACCCTATGATACCCAGAACAGACTACATCCCTGTT
GTTAATTCTTCAATGTACACCATTTATGGAGATGCTTTTTCCCAGCAGCA
ACAGCCAGCTTACTTCTTACCAAACAGCTATGTGGATCAACCATACTGTT
CCTCCCAAGTTCCAATGGTAAACTGCTCTAAGAGAGGGTATTATCCACCA
CAAATCCCTAATGGAAAACCACCTGTAAAGAAAGAGACATCAAATGttat
gaaaaataattataaCCAAATGCACCTTCAATCGCAAGTCGTTTAGAAAG
AATTATCATCCATTTACTTGTTTGGAATGAAAAAccgaaaaatttttaaa
tgtttttgatcatttttttaaCCGAATATTAGAATTGTATTTTGTAAATA
CATTTAgtctatgttttgttataaaacTTCAATCCATTTTTTCAGATATA
ACAAATGCTTATTATCAGTTTTGTTTGATATAATGCAGAtgttattttta
attgtttctagATTTATGTTGTATTGTCCTTAATTATTTGATACAATGAA
TCTTGTGCGTGAGAATATTTTCTGTGTttgtgtttatttcatttttattt
aatatgttggttaaattatttaaaattttatgtacaaAGGGGCTTCAATC
TCTACAAAATTAGTTTTTCTTGTCATCTTGTGGTGGAAGACTCCAGATAA
taagatttttaaaactttattttatcTACCTCACTATGCTTAGCTTGTTT
AAAagctaaaatttttattttatcaaaaataaaagctaaaatttttattt
tatcaaaaaataaatcaaatataaTTCAGAAATTTTTATTGTGCGAATAT
CACGGTCGTATTATGTTTTGACCTAATAAAtgtttttgtcaatatttgga
atgtaatttttcaaatttatgttGTATCGTTATATTTGGGGCCAATCTCC
AAAATACTCTTTAAAATAGCTAAAATCCTTACAAATC

Run BLAST on NCBI

transcript from alignment at sc0000050:21887..27397-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005020 ID=TCONS_00005020|Name=TCONS_00005020|organism=Clytia hemisphaerica|type=transcript|length=5511bp|location=Sequence derived from alignment at sc0000050:21887..27397- (Clytia hemisphaerica)
CACGATTTAGGCTATTTAAAAAGTCTCTGAAATTTTTATTACTTATTGAG
TCTCCTGATGTTTCACTTTAGAAATTAGTATTTTGATAACTCTCGATAAC
TTTTACTATCAAAGGAATAAATTACTTTACAACCCCCGTCTCGATTTGCA
ATGATTATAGGTATATTCCCAAGCTACTCAAAAGTGTCAATGACATTTGT
GTTCATTCAGAAAGCGCGACAAAGAAAACAAAACCACAAACAAGCCTTTT
GAGGATAACTGCCCCAATTTCTCATGCATGGATAGATTTTATAATTGAGG
GATCTGCACTTGAATTTGACACATCAGAAGAAAACAGAGAAACGAACGTT
GTTGGTCATCAAAGATAGTAAAGGAGTGGCAAAATTTGTTAGAAAATGGT
TTGGAAAAACTTTTTCTTTTACTACTACTTTGCATTTTTTACTGTTCAAC
CAAGTTTTTTACGGGTTTGTCCTCAAATATGAGTATTTCTCAAAGGTGAT
TGAGTGACTAGATAAGTTTAGCAAGTGACGTTTCTTCTGTGTACTTCTCA
TTACATTATCAATTTAAAGTTTTTTGTTTTTTTTAGTAAATTCGTGTTTT
AGCCTATTTACAATTTTCTTTCAGGCTGATGTTGTAAAGTACGGTATCCA
AATTCCTAATCGTGTTTTTGTCGGTGGAGTTGCCTTTGACGTATGTATTG
ATTGTTATCTTTTTGTTATTATTTCCTCTGCTCTCTAGAATTCGAGCATT
ATTCTTCATGATTAGATCTTCAACGACCTAAAAAAAGGTCCAATTGAATA
GTAGAGCGTCGTTTAGGAGATTTTATTGTTGACACGAAGACTTTCAATAT
TATCGAATAATGGAGGGTATCGAATAGTAGAATGTCGAATAAGAGTGTCA
ACTGTAATATGTATCGATTTAAAAGCTCGAAAAGTTTTTTCCGCAATCAT
AAGTGCATTTTACACCCGAAGTGCACTCCCAGAAGCAAACTTTTATTTTG
TTCGTGGTTGCACCCTCCCTGTTTCTACATATACCCGTGGCCTGTTTTAT
TCATTCACTCATTCATTCATTCGTGGTGCTCTTTTCTTCCATGTAGACAA
AGGAGGATGAACTGAAGGGCTTTTTTCAACAATATGGAAAAATCAAGGAA
TGTAAAATTATCAAAGACAATCAAAGCATCAGTCGAGGGTAAGATTAAGA
GCTGTTCGGTTTTTCTAGTCTTTACAACTCTGCCAAAGCTCCCGCCATGA
TGTAGCCTAGGTTTTTAGTACAGGTGTTATCTTACTTAAAATATTTGTGC
TTTTTAGACCTTTTCTTTTCAACTTCGAACTGGTAATCGCAAGTAAACTT
TCTTAGGGATTGAAATTCGTCTCATCTCAAATGTACTCGAACAAGTGAAG
TTCGAGTAAAAAAATTACTCTAACTCTTCACAATTTTTCAAAAGCATAAG
TTCGAGCAAGTTTGATATGAAAATTGTAAACTATAAATTAAGCAAATTTG
ATTTCTTTTTGCTCTTAAATAGAAGGAAACTTGTTCAAATTTTCCCAGTA
AGGCTCGTAAAATCCATAGAATCTTATGTTCAACGGAACTCATCAATCTC
TAATCAAACTCCTCACAAATTTTTGAAAGTTTCCAAAAGTTCATAGAGGA
ATTACTCGAACTTTACTTGTTCGAGTAATGGGGTCTAGACTTATAAAGGT
ACTTATTATTGTCAGATTTTTCAGTTTTTTCCGAACGAGATACAACGCAA
TTTAAAATTAATTTTTTAACTAGATTCGCATTTGTTACGTTTGAGAGCAA
ACATGACGCAATTCAAGCTCAACAAAAGGTTTGAAATATTTGAAATGTAT
TTTAGTCACTTTTCTACTAGAAGAAACATAGGACCAAATTTTTGGAATTT
TTTGTTTAAACATTGAGCCGAACGTGAACACCCGGGGGGGGGCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGACAGTGGGTTTACCAACTGACGGTATGAGCGG
CGAAAAATTGGCTTTTAGAATCGCACCCTTGTAGTGCAGAAAAGAATAGG
TGAAATTCATCCCCATACAGTGCATTTTTCAAATTTTAAACTCTTTTAGA
GCAAAAAAAATCAACTTTTTCGAGCAAAAATTTACAACTTTTTCCAGACT
TGCTGAAATTTCCACCCTTACAGTGCATTTATCAAAAGTCCACCCTTACA
GTGCATTTCTGATATTTTGAAAAGCATACCCTTAAACGCCGCATATACCC
GTCGGTCAATTTGCCTGACTGCCCCCCCCCCCTCTCCGGGCGTGAACAAT
ACGGACCATTGTAACCTTGCCAACAAATACGGCACTTTTAGCAGGCTAGA
TTTTTAGTGTTTGATTCACATTTACCGGACCTGCCGGAACATATGCCGGG
AAATGCGGTAATCAATACGGGCATTATATTTGAGACATCACCGATGGGAT
TCCCCTACAACTTTCACTTTCGTTTTCAGGGCACAGTATTTTTCAATCAG
AAAAAGTTGAACTTGGGTCCTGCTATCAGGCAAAAGGTTTGTCAGTTTAC
TCTTTTCTTTAAATATTATTCAATTTCATTTGAAACTGCTTTTCTATCTA
ATGATCTTGAGGGCATAGTCCAATCTTTAATGTTGAAGGGTTTGTTAGAG
TATATCCTTTTCTGTTTTCAAAGCAAGGGGCCCTAATATTAGGTATTTGC
ACTGAAAGATTTACTTTAACGGCTAAGTTGTATTTGATTTGTTCCTACTT
CCAACATTTTTTACTCTTATTTATCTCCATCCAGGGGGAAACTAGGGCTG
CCAGTTAACAATAGGCAACCCAACTTTGAACCCACTCTTACCCATATCAG
GATTAGAGAAAATACCACTTTGTGAATATTAATACCATTGCTTGTACTAA
TTTGACCACATTTCTATCTCTCAACAGGCAAAAAGTTGAAACTTACTATT
TTTCTGTCCCTTATTGAGACTGGGATTTAATTTTCTCACTCTTCTAACCC
TTACAGAGACACCCAGGTTCCACTTCATTTGCCTAGCTATCCCCTGGGTC
TGGGTAGAACAATAGTAAAGGGTCTTTAAATGTAATTATTGAAATTTAGG
GAGTCGTGTTCAATGGAACCAAGGAAGCAGGAAATGGTATGAAGATGATT
TCAATTTTCACAAATTATGATTGTCAAAACTCGAATCTGTCTAATGTTTG
CTTTAGAGAGAGAACTTGATCAAGGTTATTATTGGATCAGCAGAACAAAT
AATTGCCTCTCCTAACACATATATATACATGAAGCAATTTTTTGTTACCT
TTTTCTATATTTCTATGTGATTTTAATTAATTCAAATGAGTCTACTCATT
GTTCATTTTAGATCCTGTGCTCTCAACTGGAGTTTATATCCATCCCAGCG
GATATTCTTATACAGTTGCTCCAAATGGTGTGTGGTATTTTCACAAACCA
GATGGCTCGCCACCTTCGACAGCCCCTGGCGCACCACCTATGGCTTATAC
ACCAACAACAATGCAAAAAATAGCCTCGCAAAGTTCTCCCACCTCTACCA
AAGCATCTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGATGAAAACAGA
GCAAATACTACTGTTACTCATTCCAATATGCCAATTTATCAAAACCCTGG
AGTCATCCAAGAACCAGTGCAAATACCTCAGACTACAATTCAACCAGATA
TCCACTACCAGGTTAATGATTTTCTAATCATCTTTGATTTCTTTGAAAAG
ATTGGCTCATGTCATCAGAAAGCTTTATTGTGTATTGTTGCCTATTTTTC
TGGCAATTTTAATTTTTTTTTTTCAGCAAAGCTAAATATGAAATAACTAT
CCTATATTTACAGCCAACAAGCTATGTTCAACATACTCATTCAACTTTTG
GAGGATCAAATATCCATGTTGCTTTTCAAAACATGTCCATAACTACTCAT
CCACAAACAACGCCCATTCCAGTTGGCCCAGCCGCTCAGATGACTGTTCC
ACTCACTATTCCTCCCTCCTCGGAGCATATACCTGCTGATATGAATGGTG
GTCATAATCCTGGTTTTAATTATGTTAACGAATCATGCATGCCATATTAC
CCAAATGGAAAATATTGTAGTCAGGGTTCTCAGACAGGTGCTATTCCAGC
CGATGTAAGTTTTCTTTCAATAAATTCTTCATTTGCTTAGGTTAACCAAA
CATAAGGATAAGACATTTTTGTGGATTTTTCAAGAGATCTCTATTTCTAT
AAATTGATCCAAAGGGTACTTACATTTTCCCGCATATAAACTAACAATAC
CACAGTTTGAACTGATTAAGATATCTCACTTTTTGAATAACTTAACTTAA
CAAGGCATAACATAATTCATAATTCAAATTTGGTTTGCTCCATAAGTATT
TAATTTATTCTTTTTCCCAGCCATCCAGACCAGTTCCATACCCTATGATA
CCCAGAACAGACTACATCCCTGTTGTTAATTCTTCAATGTACACCATTTA
TGGAGATGCTTTTTCCCAGCAGCAACAGCCAGCTTACTTCTTACCAAACA
GCTATGTGGATCAACCATACTGTTCCTCCCAAGTTCCAATGGTAAACTGC
TCTAAGAGAGGGTATTATCCACCACAAATCCCTAATGGAAAACCACCTGT
AAAGAAAGAGACATCAAATGTTATGAAAAATAATTATAACCAAATGCACC
TTCAATCGCAAGTCGTTTAGAAAGAATTATCATCCATTTACTTGTTTGGA
ATGAAAAACCGAAAAATTTTTAAATGTTTTTGATCATTTTTTTAACCGAA
TATTAGAATTGTATTTTGTAAATACATTTAGTCTATGTTTTGTTATAAAA
CTTCAATCCATTTTTTCAGATATAACAAATGCTTATTATCAGTTTTGTTT
GATATAATGCAGATGTTATTTTTAATTGTTTCTAGATTTATGTTGTATTG
TCCTTAATTATTTGATACAATGAATCTTGTGCGTGAGAATATTTTCTGTG
TTTGTGTTTATTTCATTTTTATTTAATATGTTGGTTAAATTATTTAAAAT
TTTATGTACAAAGGGGCTTCAATCTCTACAAAATTAGTTTTTCTTGTCAT
CTTGTGGTGGAAGACTCCAGATAATAAGATTTTTAAAACTTTATTTTATC
TACCTCACTATGCTTAGCTTGTTTAAAAGCTAAAATTTTTATTTTATCAA
AAATAAAAGCTAAAATTTTTATTTTATCAAAAAATAAATCAAATATAATT
CAGAAATTTTTATTGTGCGAATATCACGGTCGTATTATGTTTTGACCTAA
TAAATGTTTTTGTCAATATTTGGAATGTAATTTTTCAAATTTATGTTGTA
TCGTTATATTTGGGGCCAATCTCCAAAATACTCTTTAAAATAGCTAAAAT
CCTTACAAATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002847	XLOC_002847	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000050	supercontig	sc0000050:21887..27397 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.511697	0.202175	0.243916	1.75737e-07	0.639495	0.287912	1.28083	0.510402	0.048952	0	1.76862	0.924883	0	0	0	0	0	0	6.38642e-10	1.57444	4.88253	4.17695	0.391147	0.829391	14.9508	13.7307

Blast

[Close]

BLAST of TCONS_00005020 vs. Swiss-Prot (Human)
Match: BOLL (Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.433e-26
Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 3

Query:  411 KYGIQIPNRVFVGGVAFDTKEDELKGFFQQYGKIKECKIIKDNQSISRGFAFVTFESKHDAIQAQQKGTVF-FNQKKLNLGPAIRQKGVVFNGTKEAGNDPVLSTGVYIHPSGYSYTVAPNGVWYFH 788
            +YG  IPNR+FVGG+ F T E +L+ FF QYG +KE KI+ D   +S+G+ FVTFE++ DA +  Q+     +  KKLN+GPAIR++ V   G   +   P   T      +GY YT   NGV YFH
Sbjct:   26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQV---GIPRSSIMPAAGTMYLTTSTGYPYTYH-NGVAYFH 148

The following BLAST results are available for this feature:

BLAST of TCONS_00005020 vs. Swiss-Prot (Human)

BLAST of TCONS_00005020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BOLL	2.433e-26	44.88	Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV...	[more]

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TCONS_00005020 (transcript) - C. hemisphaerica