Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049707 ID=TCONS_00049707|Name=TCONS_00049707|organism=Clytia hemisphaerica|type=transcript|length=1851bpRun BLAST on NCBI protein sequence of TCONS_00049707-protein >TCONS_00049707-protein ID=TCONS_00049707-protein|Name=TCONS_00049707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp GENKLTELARMVVLDGQNELSQIDICSECYIRSNDRMKNWFSIPCIPEHRRun BLAST on NCBI transcript from alignment at scaffold_165:198284..206868- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049707 ID=TCONS_00049707|Name=TCONS_00049707|organism=Clytia hemisphaerica|type=transcript|length=8585bp|location=Sequence derived from alignment at scaffold_165:198284..206868- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_165:198284..206868- >TCONS_00049707 ID=TCONS_00049707|Name=TCONS_00049707|organism=Clytia hemisphaerica|type=CDS|length=16443bp|location=Sequence derived from alignment at scaffold_165:198284..206868- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049707 vs. Swiss-Prot (Human)
Match: ZMY11 (Zinc finger MYND domain-containing protein 11 OS=Homo sapiens GN=ZMYND11 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 4.691e-22 Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 16 TELARMVVLDGQNELSQIDICSECYIRSNDRMKNWFSIPCIPEHRIVYAKLGTDPPWPAKVLRENEDGSSIDVRFFGNPYQRAWIPNRKQNIWDLDEKPQ--PKKRSKALSLAEEELKVYLRLL 381 ++ARM+ D +EL ++ +C C+ SN R NWF PCIP H +V+AK+ WPAKV+++ ++ +DVRFFG+ +QRAWIP+ +NI D+ KRS A +EL+++ R L Sbjct: 238 ADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQKEDN--QVDVRFFGHHHQRAWIPS--ENIQDITVNIHRLHVKRSMGWKKACDELELHQRFL 357 The following BLAST results are available for this feature:
BLAST of TCONS_00049707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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