TCONS_00004847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004847
Unique NameTCONS_00004847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004847 ID=TCONS_00004847|Name=TCONS_00004847|organism=Clytia hemisphaerica|type=transcript|length=1428bp
TCGGAATAACGGTGGAACACGAATTTCCATCAAATTGTAGTTTGCTACTA
TAAAGATCATATAATAATAttagaatattttaaaaatgtgaAGTCATGTT
GGGTTGTTGAATTTTTCATGTTAAATAGACGATTAGTCTGAACAACTGAC
TTGGTCTTTTTGGTCTTTTTCGTATAAGCAACTGGTATCGACTgactaaa
agtaaaaatttgattttacatAATATTCATTATTTTGCAGAACAAGATGT
ATCAGAGAAACACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATT
GGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGATCCGATGAACATCACAA
AGCATTTCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAG
AGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACATTGATATGAATAAA
GATGGTTTCATATCTTCCAAAGAATTACAAATCTGGGTTCGTGATAAATA
CACTTCTATCTTGGACTCAGAGGACATCGACTTCAAATTTCGTGAATTGG
ACATACATTTTGATAACAGTTTAACATGGGATGAATACACTGAACGATAT
TATGGCTTGAACAATACAGCGAGTGACGGACTTTCAAAGGAAATAAAGGA
GagttttaaagaatatttgGCGCGTGATCAACGACGCTGGAAATATGCAG
ATATAGATGAGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCA
AAGCCGACAAAATATGCAGAAATGGTGGATGTGGTTGCATACGAGGAAAT
TGAACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACC
TCAaAGCAATAGCTATGCCAGCCATGCGACCATTGGATGAAAAGAAATTC
CACGAGGAATATGACTTAGATAAAGATGGTAGGCTGAACAAGGATGAAGT
AAAGTTATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCAA
AGGAATTGATTCGTATTGCAGATGATGATCAAGATGGTAAATTGACAGTG
AAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCAT
TTCTGGAACAATGCTACATGATGAATTCTGAATCTTTGAACCAGTAGAAA
TGATGGTGCCAGGAGCTTCCTTCTTCAAATGAATATAATTCTTGAACATT
TCATTATAATATTGAgcaaaattgtatatttttacgatgcatttgttatt
ttttctaaaaaacaNGCCTGCAGAAAATGATGGTGGTTTTGTAAGAGGTG
CCAGGAGCTTCCTTCTCCAAATGAATATAATTCTTGAACGTTTAACTATA
TCCAGCAAAGTTGTATATTTCTTAAGAtcactttattatttttttctgaa
aaaacatagaaaaataagataaaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00004847-protein

>TCONS_00004847-protein ID=TCONS_00004847-protein|Name=TCONS_00004847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MYQRNTVLFLPLVFCTMIGGIFGGGLRPGSDEHHKAFLGKLKDEYDHLSV
EESVRRLRLLAPHIDMNKDGFISSKELQIWVRDKYTSILDSEDIDFKFRE
LDIHFDNSLTWDEYTERYYGLNNTASDGLSKEIKESFKEYLARDQRRWKY
ADIDEDGALNLEEFHMFSKPTKYAEMVDVVAYEEIEHYDINKDGFLSLEE
YLKAIAMPAMRPLDEKKFHEEYDLDKDGRLNKDEVKLWKTPKFFDQAELE
AKELIRIADDDQDGKLTVKEIVHNHFVFVGSKATISGTMLHDEF
Run BLAST on NCBI

transcript from alignment at sc0000049:125370..129015+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004847 ID=TCONS_00004847|Name=TCONS_00004847|organism=Clytia hemisphaerica|type=transcript|length=3646bp|location=Sequence derived from alignment at sc0000049:125370..129015+ (Clytia hemisphaerica)
TCGGAATAACGGTGGAACACGAATTTCCATCAAATTGTAGTTTGCTACTA
TAAAGATCATATAATAATAttagaatattttaaaaatgtgaAGTCATGTT
GGGTTGTTGAATTTTTCATGTTAAATAGACGATTAGTCTGAACAACTGAC
TTGGTCTTTTTGGTCTTTTTCGTATAAGCAACTGGTATCGACTgactaaa
agtaaaaatttgattttacatAATATTCATTATTTTGCAGAACAAGATGT
ATCAGAGAAACACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATT
GGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGATCCGATGAACATCACAA
AGCATTTCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAG
AGTCCGTTCGTAGATTGAGGTAAACTGACTTATTTCTCGAATAGCATGTA
ACATAAATTGAAAACTCTTGGAGTTTTAGAAGTGAGAAGTCATTTATCCA
GTGAGAGGTTTTTAGCATGGGTGTAGTGAGGAAAACCTAAATGAGCTAAA
TGGAAAGAAGGCGGGTTTGGCTATCTCCTGTTTTTTGAAAGGATATTGAT
TTCGAATTCTACTGCTCTGATCTGGACAAATTTATTGGAAATTAGGTTCA
CCTTCGCCTGCTTATCCTTTCTTACATGGAAGGAGTATTTAGTAATTGTT
ATTCCAGATAGTGGATACCACTGGGTCTGTTATATAGATTTgtgacaata
gaccttttcataaattacttaatgaacatcacttgcctcgttttgaaatg
atTGTCATGGTGCTTTACTCCAAGCGGATTTTATCATAACTACGttctat
tcataaaagaatcaTTTGTCTCATATATATCTATCatatgtctcaaggga
cataatcaccatggcaattgtttgaatacgaggcaagagtgatgttcgtg
acgtaattgaTGAAAAGATCTATCTTTACTGAGAGTGTCTGGTATTCGAT
CGAAATTTAGTGTATGCATAGAACCAGTGACAAGCTAATCCAACGGATAA
ATTTGGTACATATTCTCAACCTAAATCTACATATACTCTCAATTTCAGGT
TACTCGCTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAA
GAATTACAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGA
GGACATCGACTTCAAATTTCGTGAATTGGACATACATTTTGATAACAGTT
TAACATGGGATGAATACACTGAACGATATTATGGCTTGAACAATACAGGT
GAACTATACTTGTAAATTACGCCTTATATTCACAACAATCAGTAAATCTG
GCTTACGcaggctgttcttattttttcattatttcaaacTTAATGTTCCT
TATATTCGGCTTACAGTCAGTCAGTTATTATCAGTTATTAGAATCTTATG
CCGAGTTTGTTCTCAATTTTCATCGAAATTGAGCcacatgttcttataaa
aaagcgtagAACCTTTCTACTAATATTGTCTTCTTCGCAATCAAGTTATC
GGCAAATCTCTATCAATAACATGTCATGCCAACCAAATTAGACTCCAGTG
ATAAAATGCAAGATATTTAGAAAATGTAATCATTTATAGCGAGTGACGGA
CTTTCAAAGGAAATAAAGGAGagttttaaagaatatttgGCGCGTGATCA
ACGACGCTGGAAATATGCAGATATAGATGAGGATGGGGCGCTAAATCTAG
AAGAATTCCACATGTTTTCAAAGCCGACAAAATATGCAGAAATGGTGGAT
GTGGTTGCATACGTAAGCGTGTATTGCATAATAAAGGCCTCCGAAGAAGA
GTTCTCGAATTTATATGGGGACAAAATTTACTGTTCCTTCTTATCATTGT
TTAGGTCGAGTGAGAAGAATATATGTTGAGCGTCTTTTGATGTCTTATGA
GTGATATAGCCTAAGCTCTGTTGAAGTCGTTTCTATAACACGACCCCCCG
TGAGTTTCCACAAGTTATATTTTAAAGAAAGTCCGACTGTGGTAACCTGA
AGTATTAGATGCCATTGTTATAAACAACTCCAAATTACATCCTAAAACAT
ATCCTAAGTTCGGTATAGGGTGTGTCCAATAGTTTGCACCTTCAGATAAT
TTGATATGACTATTGAGTATNTCCAATAGTTTGCACCTTCTGATCATTTA
ATGACTTTTGACTATCAATCATCTTTATCCGTTGTTCAGGAGGAAATTGA
ACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACCTCA
GTGAGtacaaaataaattattatcAGCGCAGGGAGCCTATTATATTATTG
CTATTGCCCATTTTATCGGATTTTCATACAACTCGAATCAGCAAGTAAAA
CAAAATGAGATAGAATCTTCGATTACTGAAGCTATATAGATTCCATTCAC
TCCTGAAAGAATCaccatttttcttcatttcagaAGCAATAGCTATGCCA
GCCATGCGACCATTGGATGAAAAGAAATTCCACGAGGAATATGACTTAGA
TAAAGATGGTAGGCTGAACAAGGTAGAGTCGTAAATGGGCTTAGAATTCA
CAAATTATTATTTGTCTATCACCATAGAAAATTTGGCAGTTTTTTTTGCA
GCCctggtcaaaaatatttctaaaatccTTTCTACAATTGAACTAACTAC
GTGTGCGTGGCTGTGAGGTATGTAAGATGCCATGGATAGTGAGGTCTCTA
CTATCGATCATTATTTTTATCACATTTCTTTCACCAGGATGAAGTAAAGT
TATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCAAAGGAA
TTGATTCGTATTGCAGATGATGATCAAGTATTTATTTTACTTCCATTTCT
GGCTGAAGTACTTTTGGCTTTCTTGACCGATCTTAATCTCGGTTAAAAGA
ACATTGATATTTCTGCTGAGCCATGAGACACGATTCATTCtttcaatttg
aaaatcaaagttGGCTTCTAACATACAGAGCCCAGGTAGAATATGTTTGA
CAAATCAAAAGTTTCAAGCTCGGCTCAAAGAAACTGGCTGTGATTTaagc
gaagaagagtatttttaAGCGAATTAACAATAATATTTAATGATAAACCA
GTGTTGGATCCGAGGGGAGTTTGAGCTCTCCGTCATAAATTTCGAACTCA
TATTCGCCACTGTAAAACATTCTTACCTTTCGCCATTTCTCTTTTTGAAG
GATGGTAAATTGACAGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGT
GGGAAGTAAAGCCACCATTTCTGGAACAATGCTACATGATGAATTCTGAA
TCTTTGAACCAGTAGAAATGATGGTGCCAGGAGCTTCCTTCTTCAAATGA
ATATAATTCTTGAACATTTCATTATAATATTGAgcaaaattgtatatttt
tacgatgcatttgttattttttctaaaaaacaNGCCTGCAGAAAATGATG
GTGGTTTTGTAAGAGGTGCCAGGAGCTTCCTTCTCCAAATGAATATAATT
CTTGAACGTTTAACTATATCCAGCAAAGTTGTATATTTCTTAAGAtcact
ttattatttttttctgaaaaaacatagaaaaataagataaaaaatc

Coding sequence (CDS) from alignment at sc0000049:125370..129015+

>TCONS_00004847 ID=TCONS_00004847|Name=TCONS_00004847|organism=Clytia hemisphaerica|type=CDS|length=6195bp|location=Sequence derived from alignment at sc0000049:125370..129015+ (Clytia hemisphaerica)
ATGTATCAGAGAAACACTGTATTGTTCTTACCATTGGTATTCTGCACCAT
GATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGATCCGATGAACATC
ACAAAGCATTTCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTT
GAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACATTGATATGAA
TAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGGGTTCGTGATA
AATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAAATTTCGTGAA
TTGGACATACATTTTGATAACAGTTTAACATGGGATGAATACACTGAACG
ATATTATGGCTTGAACAATACAGCGAGTGACGGACTTTCAAAGGAAATAA
AGGAGagttttaaagaatatttgGCGCGTGATCAACGACGCTGGAAATAT
GCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTT
TTCAAAGCCGACAAAATATGCAGAAATGGTGGATGTGGTTGCATACGAGG
AAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAA
TACCTCAaAGCAATAGCTATGCCAGCCATGCGACCATTGGATGAAAAGAA
ATTCCACGAGGAATATGACTTAGATAAAGATGGTAGGCTGAACAAGGATG
AAGTAAAGTTATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAA
GCAAAGGAATTGATTCGTATTGCAGATGATGATCAAGATGGTAAATTGAC
AGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCA
CCATTTCTGGAACAATGCTACATGATGAATTCTGAATGTATCAGAGAAAC
ACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATTGGTGGAATCTT
TGGTGGTGGGTTGAGGCCTGGATCCGATGAACATCACAAAGCATTTCTTG
GTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAGAGTCCGTTCGT
AGATTGAGGTTACTCGCTCCACACATTGATATGAATAAAGATGGTTTCAT
ATCTTCCAAAGAATTACAAATCTGGGTTCGTGATAAATACACTTCTATCT
TGGACTCAGAGGACATCGACTTCAAATTTCGTGAATTGGACATACATTTT
GATAACAGTTTAACATGGGATGAATACACTGAACGATATTATGGCTTGAA
CAATACAGCGAGTGACGGACTTTCAAAGGAAATAAAGGAGagttttaaag
aatatttgGCGCGTGATCAACGACGCTGGAAATATGCAGATATAGATGAG
GATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCAAAGCCGACAAA
ATATGCAGAAATGGTGGATGTGGTTGCATACGAGGAAATTGAACATTATG
ATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACCTCAaAGCAATA
GCTATGCCAGCCATGCGACCATTGGATGAAAAGAAATTCCACGAGGAATA
TGACTTAGATAAAGATGGTAGGCTGAACAAGGATGAAGTAAAGTTATGGA
AGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCAAAGGAATTGATT
CGTATTGCAGATGATGATCAAGATGGTAAATTGACAGTGAAGGAGATAGT
TCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAA
TGCTACATGATGAATTCTGAATGTATCAGAGAAACACTGTATTGTTCTTA
CCATTGGTATTCTGCACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAG
GCCTGGATCCGATGAACATCACAAAGCATTTCTTGGTAAACTGAAAGATG
AATATGATCATTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTC
GCTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAAGAATT
ACAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGAGGACA
TCGACTTCAAATTTCGTGAATTGGACATACATTTTGATAACAGTTTAACA
TGGGATGAATACACTGAACGATATTATGGCTTGAACAATACAGCGAGTGA
CGGACTTTCAAAGGAAATAAAGGAGagttttaaagaatatttgGCGCGTG
ATCAACGACGCTGGAAATATGCAGATATAGATGAGGATGGGGCGCTAAAT
CTAGAAGAATTCCACATGTTTTCAAAGCCGACAAAATATGCAGAAATGGT
GGATGTGGTTGCATACGAGGAAATTGAACATTATGATATCAACAAAGACG
GTTTCCTTTCCTTGGAAGAATACCTCAaAGCAATAGCTATGCCAGCCATG
CGACCATTGGATGAAAAGAAATTCCACGAGGAATATGACTTAGATAAAGA
TGGTAGGCTGAACAAGGATGAAGTAAAGTTATGGAAGACACCAAAATTTT
TCGATCAAGCAGAATTAGAAGCAAAGGAATTGATTCGTATTGCAGATGAT
GATCAAGATGGTAAATTGACAGTGAAGGAGATAGTTCATAACCATTTCGT
CTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAATGCTACATGATGAAT
TCTGAATGTATCAGAGAAACACTGTATTGTTCTTACCATTGGTATTCTGC
ACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGATCCGATGA
ACATCACAAAGCATTTCTTGGTAAACTGAAAGATGAATATGATCATTTAT
CCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACATTGAT
ATGAATAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGGGTTCG
TGATAAATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAAATTTC
GTGAATTGGACATACATTTTGATAACAGTTTAACATGGGATGAATACACT
GAACGATATTATGGCTTGAACAATACAGCGAGTGACGGACTTTCAAAGGA
AATAAAGGAGagttttaaagaatatttgGCGCGTGATCAACGACGCTGGA
AATATGCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAATTCCAC
ATGTTTTCAAAGCCGACAAAATATGCAGAAATGGTGGATGTGGTTGCATA
CGAGGAAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGG
AAGAATACCTCAaAGCAATAGCTATGCCAGCCATGCGACCATTGGATGAA
AAGAAATTCCACGAGGAATATGACTTAGATAAAGATGGTAGGCTGAACAA
GGATGAAGTAAAGTTATGGAAGACACCAAAATTTTTCGATCAAGCAGAAT
TAGAAGCAAAGGAATTGATTCGTATTGCAGATGATGATCAAGATGGTAAA
TTGACAGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAA
AGCCACCATTTCTGGAACAATGCTACATGATGAATTCTGAATGTATCAGA
GAAACACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATTGGTGGA
ATCTTTGGTGGTGGGTTGAGGCCTGGATCCGATGAACATCACAAAGCATT
TCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAGAGTCCG
TTCGTAGATTGAGGTTACTCGCTCCACACATTGATATGAATAAAGATGGT
TTCATATCTTCCAAAGAATTACAAATCTGGGTTCGTGATAAATACACTTC
TATCTTGGACTCAGAGGACATCGACTTCAAATTTCGTGAATTGGACATAC
ATTTTGATAACAGTTTAACATGGGATGAATACACTGAACGATATTATGGC
TTGAACAATACAGCGAGTGACGGACTTTCAAAGGAAATAAAGGAGagttt
taaagaatatttgGCGCGTGATCAACGACGCTGGAAATATGCAGATATAG
ATGAGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCAAAGCCG
ACAAAATATGCAGAAATGGTGGATGTGGTTGCATACGAGGAAATTGAACA
TTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACCTCAaAG
CAATAGCTATGCCAGCCATGCGACCATTGGATGAAAAGAAATTCCACGAG
GAATATGACTTAGATAAAGATGGTAGGCTGAACAAGGATGAAGTAAAGTT
ATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCAAAGGAAT
TGATTCGTATTGCAGATGATGATCAAGATGGTAAATTGACAGTGAAGGAG
ATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGG
AACAATGCTACATGATGAATTCTGAATGTATCAGAGAAACACTGTATTGT
TCTTACCATTGGTATTCTGCACCATGATTGGTGGAATCTTTGGTGGTGGG
TTGAGGCCTGGATCCGATGAACATCACAAAGCATTTCTTGGTAAACTGAA
AGATGAATATGATCATTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGT
TACTCGCTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAA
GAATTACAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGA
GGACATCGACTTCAAATTTCGTGAATTGGACATACATTTTGATAACAGTT
TAACATGGGATGAATACACTGAACGATATTATGGCTTGAACAATACAGCG
AGTGACGGACTTTCAAAGGAAATAAAGGAGagttttaaagaatatttgGC
GCGTGATCAACGACGCTGGAAATATGCAGATATAGATGAGGATGGGGCGC
TAAATCTAGAAGAATTCCACATGTTTTCAAAGCCGACAAAATATGCAGAA
ATGGTGGATGTGGTTGCATACGAGGAAATTGAACATTATGATATCAACAA
AGACGGTTTCCTTTCCTTGGAAGAATACCTCAaAGCAATAGCTATGCCAG
CCATGCGACCATTGGATGAAAAGAAATTCCACGAGGAATATGACTTAGAT
AAAGATGGTAGGCTGAACAAGGATGAAGTAAAGTTATGGAAGACACCAAA
ATTTTTCGATCAAGCAGAATTAGAAGCAAAGGAATTGATTCGTATTGCAG
ATGATGATCAAGATGGTAAATTGACAGTGAAGGAGATAGTTCATAACCAT
TTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAATGCTACATGA
TGAATTCTGAATGTATCAGAGAAACACTGTATTGTTCTTACCATTGGTAT
TCTGCACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGATCC
GATGAACATCACAAAGCATTTCTTGGTAAACTGAAAGATGAATATGATCA
TTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACA
TTGATATGAATAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGG
GTTCGTGATAAATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAA
ATTTCGTGAATTGGACATACATTTTGATAACAGTTTAACATGGGATGAAT
ACACTGAACGATATTATGGCTTGAACAATACAGCGAGTGACGGACTTTCA
AAGGAAATAAAGGAGagttttaaagaatatttgGCGCGTGATCAACGACG
CTGGAAATATGCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAAT
TCCACATGTTTTCAAAGCCGACAAAATATGCAGAAATGGTGGATGTGGTT
GCATACGAGGAAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTC
CTTGGAAGAATACCTCAaAGCAATAGCTATGCCAGCCATGCGACCATTGG
ATGAAAAGAAATTCCACGAGGAATATGACTTAGATAAAGATGGTAGGCTG
AACAAGGATGAAGTAAAGTTATGGAAGACACCAAAATTTTTCGATCAAGC
AGAATTAGAAGCAAAGGAATTGATTCGTATTGCAGATGATGATCAAGATG
GTAAATTGACAGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGA
AGTAAAGCCACCATTTCTGGAACAATGCTACATGATGAATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002746XLOC_002746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004847-proteinTCONS_00004847-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004847-exon-sc0000049-1491911889:125370..125788TCONS_00004847-exon-sc0000049-1491911889:125370..125788Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:125370..125788TCONS_00004847-exon-sc0000049-1510915933:125370..125788Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:125370..125788TCONS_00004847-exon-sc0000049-1575043694:125370..125788Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:126468..126667TCONS_00004847-exon-sc0000049-1491911889:126468..126667Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:126468..126667TCONS_00004847-exon-sc0000049-1510915933:126468..126667Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:126468..126667TCONS_00004847-exon-sc0000049-1575043694:126468..126667Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:127009..127181TCONS_00004847-exon-sc0000049-1491911889:127009..127181Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:127009..127181TCONS_00004847-exon-sc0000049-1510915933:127009..127181Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:127009..127181TCONS_00004847-exon-sc0000049-1575043694:127009..127181Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:127609..127669TCONS_00004847-exon-sc0000049-1491911889:127609..127669Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:127609..127669TCONS_00004847-exon-sc0000049-1510915933:127609..127669Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:127609..127669TCONS_00004847-exon-sc0000049-1575043694:127609..127669Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:127853..127941TCONS_00004847-exon-sc0000049-1491911889:127853..127941Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:127853..127941TCONS_00004847-exon-sc0000049-1510915933:127853..127941Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:127853..127941TCONS_00004847-exon-sc0000049-1575043694:127853..127941Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:128157..128246TCONS_00004847-exon-sc0000049-1491911889:128157..128246Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:128157..128246TCONS_00004847-exon-sc0000049-1510915933:128157..128246Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:128157..128246TCONS_00004847-exon-sc0000049-1575043694:128157..128246Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1491911889:128620..129015TCONS_00004847-exon-sc0000049-1491911889:128620..129015Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1510915933:128620..129015TCONS_00004847-exon-sc0000049-1510915933:128620..129015Clytia hemisphaericaexon
TCONS_00004847-exon-sc0000049-1575043694:128620..129015TCONS_00004847-exon-sc0000049-1575043694:128620..129015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:125370..129015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261936	0.255429	0.197718	0.193436	0.196242	0.155073	0.67352	0.525451	0.343355	0.151893	0.47178	0.387662	8.67155	8.48285	7.883	11.2795	2.57809	3.38146	17.5729	16.6729	9.1453	7.32936	6.37368	6.97779	6.43702	9.45396	0.279351	0.127771	3.61795	4.476
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00004847 vs. Swiss-Prot (Human)
Match: CALU (Calumenin OS=Homo sapiens GN=CALU PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.653e-40
Identity = 100/274 (36.50%), Postives = 154/274 (56.20%), Query Frame = 1 
Query:  346 HKAFLGKLKDE-YDHLSVEESVRRLRLLAPHIDMNKDGFISSKELQIWVRDKYTSILDSEDIDFKFRELDIHFDNSLTWDEYTERYYGL---NNTASDGLSKEIKESFKEYLARDQRRWKYADIDEDGALNLEEFHMFSKPTKYAEMVDVVAYEEIEHYDINKDGFLSLEEYLKAIAM-------PAMRPLDEKKFHEEYDLDKDGRLNKDEVKLWKTPKFFDQAELEAKELIRIADDDQDGKLTVKEIVHNHFVFVGSKATISGTML--HDEF 1128
            H AFLG  + + +D L+ EES  RL  +   ID +KDGF++  EL+ W++      +  ED++ +++  D++ D  ++W+EY    YG    +    DG +      +K+ + RD+RR+K AD D D     EEF  F  P +Y  M D+V  E +E  D N DGF+ LEEY+  +         P     + ++F E  D ++DG+++K+E K W  P  +D AE EA+ L+  +D ++DGKLT +EIV  + +FVGS+AT  G  L  HDEF
Sbjct:   49 HDAFLGAEEAKTFDQLTPEESKERLGKIVSKIDGDKDGFVTVDELKDWIKFAQKRWI-YEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFN------YKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKDGKLTKEEIVDKYDLFVGSQATDFGEALVRHDEF 315
The following BLAST results are available for this feature:
BLAST of TCONS_00004847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALU2.653e-4036.50Calumenin OS=Homo sapiens GN=CALU PE=1 SV=2[more]
back to top