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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004637 ID=TCONS_00004637|Name=TCONS_00004637|organism=Clytia hemisphaerica|type=transcript|length=1183bp
CAAGGTTTGGGTTTGCGACGGTGAAATACGTCGCtgtttgatagttaggA
CGAAACACAATACGACCCAACATTACAGCAACAAAAATGATGATGAAATT
TTATGCAGTTTTACTGGTCCTTCAATACCTAGCAACCAGAACCGAATCAA
GAAATATAGAGACTGATATAAAACTTCTTCATAAATTAGTACTGGACTTG
ATTGATGTGGAAATGAACTTACTTAAATATGAAGAAGTCAACTCAATAGA
CTcgactgaaaataaaaaatcaattttccataGACATAGTCTGAGTTCTA
AATCAAATTTTCGTGAAAACGATAATGCCGAATTAAGTTATCAAAATGTT
GTATGTTACCATTTGAATTTTCAACATGGTGGATATGGGTTCGCCAACAA
AATACCATCTTTCTTCaacaagaagaaaacaaaatatgTCNTGGTGGATA
TGGGTTCGCCAACAAAATACCATCTTTCTTCAACAAGGAGAAAACGAAGT
ATGTGGATGCAAAACAGTTGAAACGATACCAAATCCTTAGCCCTGATCCA
AAATGGACGCAAACAGAAGTGAAAAAATATCACCAAGTTATAATGAAACT
ACGAAGTCATATCTCAAAGATTGATGATTCAAAGGCTTTGTTTAGTATCA
AGAAATTGGTggcaaaattattaaaattgcCGGAACCGAAATTTCAGAGC
TCGATTTCATTGACGAATAATGATCAAAAGAGATCTTTCAGTAACCAGGT
GTCATCAACGTGTTTTCAAAAGGAGACAAAGGATCATAATGGTCGACTCT
ACCGTGCTTGTGGATACTGCAAAACAACTAAAGATCTCATTAACAAGTTA
CCAGagaaaatcattgaaatcacgTGTAACCATGGTGACGAGTCATCATG
TTTCAGTTCATTTGGTGAATGTGTACAAAAACATCGATTCGTAACCGTCC
TCAAGAAAACTGGCAAATgcatcaaattattgaattcACCAAACATTTGG
GTGGATGAGTGGATACTACATGACGAACTTGTTGGAGCTTCTTGTCAATG
TGAATTAAACAGTTTGAATTTCCTTAAGGGGAAACGTCGTAAATAGGTTG
CAAATGTTGATGAACAACCTTCAGGACGAACCACTTGGACACAATGCAAG
GAAAAAGTCGCCTTTGAAATGCATTAAGAAGAg Run BLAST on NCBI protein sequence of TCONS_00004637-protein >TCONS_00004637-protein ID=TCONS_00004637-protein|Name=TCONS_00004637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MLPFEFSTWWIWVRQQNTIFLQQEENKICXGGYGFANKIPSFFNKEKTKY
VDAKQLKRYQILSPDPKWTQTEVKKYHQVIMKLRSHISKIDDSKALFSIK
KLVAKLLKLPEPKFQSSISLTNNDQKRSFSNQVSSTCFQKETKDHNGRLY
RACGYCKTTKDLINKLPEKIIEITCNHGDESSCFSSFGECVQKHRFVTVL
KKTGKCIKLLNSPNIWVDEWILHDELVGASCQCELNSLNFLKGKRRK Run BLAST on NCBI transcript from alignment at sc0000047:472418..477690+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004637 ID=TCONS_00004637|Name=TCONS_00004637|organism=Clytia hemisphaerica|type=transcript|length=5273bp|location=Sequence derived from alignment at sc0000047:472418..477690+ (Clytia hemisphaerica)
CAAGGTTTGGGTTTGCGACGGTGAAATACGTCGCtgtttgatagttaggg
ttagggtttgtcgttctttttgtcgctttttaatagttatttgtcgctcg
ttttagatgatctggaaacgttagatggaGAGTCTCTTGGACACACATAA
TTTATATTTAAAGTGTTAAACCATGTGTTCTATTTTCATCCAGTTCTGAC
GCCATGTCGTGATAAAAATACTTGGAAAGAAGATGTAAAATCCTTTGGAT
TCAATTTAGAATTTAAACAAGGGgttatttctttgtttattttttgaaat
attttagttGATGTGTGTATTCCGTATCCTTTTTTGCAATGCAAATAGTC
TTTGTCGCGACCCCTAAAAATGTTGTTGGGAACtattaaaatttgatttg
aaattcatggtttgtaatttttcaatgtttttgtggAGTTGACTTTAAGG
AGgccttttttttcaagaattataaCCATTTTTTTGTCAGTCATAACCAT
TGACCAGATTTGTTTACTTTGACAGGTCGTCGAATCTTGACTCGTTCTTA
CAAACTTTTGTTTGCTtcatccccggggggggggggggNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttt
tttcgcaaatttcgagtcccacgtagggtccatttttcgaacctcagcgg
agcacccccgtcggtcgacaagggtagtacccccccccggggcttCATCC
TCAGGAATAGTTAAAACCACGGCGTTCTAAATCACACTTTTTGGGCTTGA
GATTTAAAACACCATGGTTAACTTAAAGAGGTTTAATTTTCGTCCTTTCT
GTTTTTCCAAACTAGAATGCTCAAGACACCACAAAAATTATCCGATGTTT
TGTATTAATACGGGGATATACTTGTTATGCAGCCATTTTAATGTTTACAC
ATTTCCTGATGTGCGATATCCTTATCAACCAACCCTCGTACAATTTTACA
TGGAATTTATTATTCTTTATAGACGAAACACAATACGACCCAACATTACA
GCAACAAAAATGATGATGAAATTTTATGCAGTTTTACTGGTCCTTCAATA
CCTAGCAACCAGAACCGAATCAAGAAATATAGAGACTGATATAAAACTTC
TTCATAAATTAGTACTGGACTTGATTGATGTGGAAATGAACTTACTTAAA
TATGAAGAAGTCAACTCAATAGACTcgactgaaaataaaaaatcaatttt
ccataGACATAGTCTGAGTTCTAAATCAAATTTTCGTGAAAACGATAATG
CCGAATTAAGTTATCAAAATGTTGTATGTTACCATTTGAATTTTCAACAT
GGTGGATATGGGTTCGCCAACAAAATACCATCTTTCTTCaacaagaagaa
aacaaaatatgTCNTGGTGGATATGGGTTCGCCAACAAAATACCATCTTT
CTTCAACAAGGAGAAAACGAAGTATGTGGATGCAAAACAGTTGAAACGAT
ACCAAATCCTTAGCCCTGATCCAAAATGGACGCAAACAGAAGTGAAAAAA
TATCACCAAGTTATAATGAAACTACGAAGTCATATCTCAAAGATTGATGA
TTCAAAGGCTTTGTTTAGTATCAAGAAATTGGTggcaaaattattaaaat
tgcCGGAACCGAAATTTCAGAGCTCGATTTCATTGACGAATAATGATCAA
AAGAGATCTTTCAGTAACCAGGTGTCATCAACGTGTTTTCAAAAGGAGAC
AAAGGATCATAATGGTCGACTCTACCGTGCTTGTGGATACTGCAAAACAA
CTAAAGATCTCATTAACAAGTAAGTTCCTTTTAAGACGTTGGTACAatac
aacatgctccatcccaccaacctgaaactctttctcgtgtctccacccca
tttttctttctactaATAAAAGATAGAGCTCACTTTTGTCCCAGAGACAA
AATCGGCGTGTTTTtcgggtatttccctcactttttgtcacatgaaacaa
aaaagaagccCTGGGAcacgcatttttttgttttgatgggATGGAACATG
TTGTCATACCATTTAGcgtatctcctaccatttgaTTACACATCATTTTT
AAACAACAGATAGAACTACTTTCTCCCCAGCGCCACACGAGCACAAATTG
TGAGAAATTcttattctgctttgtcagcatagagaCGCCTTAAATAAAGA
ATAAGATAATATCTCATTATGCGCCAAAAGCAAGCATCATTGCTGTATAG
TGGAGAATAAGTATTTAATCCATGATTTTAAGGGCTACGCTATACTatac
aatatattgtcaggcaatacaTTGATGATATATCGCTGaatgccggcaat
atattgaaaaggcgtcctcaatatattgtcaggttgatttgcaattttcc
aacaatatagggggattgtttacagtaggaaaattccttttcataataga
gcacctgttatttacttcgtacatttTTTTATGGTCCAAAAacgatattg
tcaaatattgtttgTCAATATATTGTTTAGTGTAAGTAGCCCTTTAGGTT
GTTCCCACAACATCCGCAGATACGAAACTCTCTGTAATCCAAACTATAAT
ATTCATCCAATTTCATGCTCAATTTTCAGGTTACCAGagaaaatcattga
aatcacgTGTAACCATGGTGACGAGTCATCATGTTTCAGTTCATTTGGTG
AATGTGTACAAAAACATCGATTCGTAACCGTCCTCAAGAAAACTGGCAAA
TgcatcaaattattgaattcACCAAACATTTGGGTGGATGAGTGGATACT
ACATGACGAACTTGTTGGAGCTTCTTGTCAATGTGAATTAAACAGTTTGA
ATTTCCTTAAGGGGTAAGTGTGATTtcatgatacacgtttttttataaga
acgaactatatagaagcataaggcttcgatggctaaaatattaagaacaa
gttaagaacattttaagactttgtcgTTTCtgaacacccaatttcttaga
ctggcacgccagtcgagTTGGAACGGTATCACACGGGAAAAGTGAGCATA
GGAGccaggtaagcgtaggaagaaattttgtcggcggcaaagGTTCTCAT
CAACTTTTTCTAGTTCCCCTACGCAGCTCATATTCCAACAAACGCccacc
gcctttatgttcccaccctctgacatgattgattaacagactagtttgct
ggTCTAccaatttctaaataaaaaaaaaaactcaaaaagttaagaacatc
ccaaggcttgaaagttttttagatgtttttaaaaaacgtaaaagtaataa
ataattataattataaataaataatttctCAATTCTAATCTGATTAATTT
TTCGCgagatttaagggctctgaccatagtccgaaaattgattttggtat
ttgaacatgaaagttatatttcaggttccttaatacttttaacaaagaat
tgcctttataaattgctttttaatcaaatcccttaagaatAATTAAGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttttgtt
tcaaaatttctttacactgtccgcaaagaattgaactattttaaattttg
cggaaaatttttctaaaaagatgtatcaaaagttatgactgtatttttaa
gcaaaatccagatgaaaaattgatgaaaaaccactattttgaagattttg
agacaaagaagcatttacaaaaattttccgcaaaaatatttattgttcgg
taaaagatacacattctactgtgaaaattttttcaaaatgtttcttcttc
gccgaaacttatcacttcaaagttgaaatactcttcctcgcaaaagtctt
cattttcttcctcatcaaattttttcaatgcaatttttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNagaaaatgtataacatgccatagttttgttggttacatcagtcag
aaaacacattttaaacacggcaattatgaaaaattcactatggtcagagc
ccttaatttaaCAAGTCAAAAAGATCGCGGCGAAGTTctttggatttatt
ttcgcgaagcagcgttttgtaagattttgcacagatttaatttcaaaata
gatAAAGTTCTTACGTTCTTGACGTTTCGATTCATGGTGGAACAACTTCA
GAATGATTGTGGTGGATTCAATTTCGTTAATGAGCTGAATATCCTTGAAA
GTTGTTTTCTCATCGAAAGTAAAAACctcgtgaaaattaatccaagTTTA
CCAATTTATTATTGGTGACTTTGACTTTTTATCCCAACTATTTCAAATGT
AATTTTCACTGACTTCCAGCAAGTGCATTTTCATTTCtgttagttttttt
ctggaaaataaaaGTTTCATGTGCAATTAATCGAATTAGTACGTTACAAG
GAGGAGGGTGTATAAAATGTAAAcgaatttcaaaatgcatttatttctta
aaaatatattttcattccAGGAAACGTCGTAAATAGGTTGCAAATGTTGA
TGAACAACCTTCAGGACGAACCACTTGGACACAATGCAAGGAAAAAGTCG
CCTTTGAAATGCATTAAGAAGAg Coding sequence (CDS) from alignment at sc0000047:472418..477690+ >TCONS_00004637 ID=TCONS_00004637|Name=TCONS_00004637|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000047:472418..477690+ (Clytia hemisphaerica)
ATGTTACCATTTGAATTTTCAACATGGTGGATATGGGTTCGCCAACAAAA
TACCATCTTTCTTCaacaagaagaaaacaaaatatgTCNTGGTGGATATG
GGTTCGCCAACAAAATACCATCTTTCTTCAACAAGGAGAAAACGAAGTAT
GTGGATGCAAAACAGTTGAAACGATACCAAATCCTTAGCCCTGATCCAAA
ATGGACGCAAACAGAAGTGAAAAAATATCACCAAGTTATAATGAAACTAC
GAAGTCATATCTCAAAGATTGATGATTCAAAGGCTTTGTTTAGTATCAAG
AAATTGGTggcaaaattattaaaattgcCGGAACCGAAATTTCAGAGCTC
GATTTCATTGACGAATAATGATCAAAAGAGATCTTTCAGTAACCAGGTGT
CATCAACGTGTTTTCAAAAGGAGACAAAGGATCATAATGGTCGACTCTAC
CGTGCTTGTGGATACTGCAAAACAACTAAAGATCTCATTAACAAGTTACC
AGagaaaatcattgaaatcacgTGTAACCATGGTGACGAGTCATCATGTT
TCAGTTCATTTGGTGAATGTGTACAAAAACATCGATTCGTAACCGTCCTC
AAGAAAACTGGCAAATgcatcaaattattgaattcACCAAACATTTGGGT
GGATGAGTGGATACTACATGACGAACTTGTTGGAGCTTCTTGTCAATGTG
AATTAAACAGTTTGAATTTCCTTAAGGGGAAACGTCGTAAATAGATGTTA
CCATTTGAATTTTCAACATGGTGGATATGGGTTCGCCAACAAAATACCAT
CTTTCTTCaacaagaagaaaacaaaatatgTCNTGGTGGATATGGGTTCG
CCAACAAAATACCATCTTTCTTCAACAAGGAGAAAACGAAGTATGTGGAT
GCAAAACAGTTGAAACGATACCAAATCCTTAGCCCTGATCCAAAATGGAC
GCAAACAGAAGTGAAAAAATATCACCAAGTTATAATGAAACTACGAAGTC
ATATCTCAAAGATTGATGATTCAAAGGCTTTGTTTAGTATCAAGAAATTG
GTggcaaaattattaaaattgcCGGAACCGAAATTTCAGAGCTCGATTTC
ATTGACGAATAATGATCAAAAGAGATCTTTCAGTAACCAGGTGTCATCAA
CGTGTTTTCAAAAGGAGACAAAGGATCATAATGGTCGACTCTACCGTGCT
TGTGGATACTGCAAAACAACTAAAGATCTCATTAACAAGTTACCAGagaa
aatcattgaaatcacgTGTAACCATGGTGACGAGTCATCATGTTTCAGTT
CATTTGGTGAATGTGTACAAAAACATCGATTCGTAACCGTCCTCAAGAAA
ACTGGCAAATgcatcaaattattgaattcACCAAACATTTGGGTGGATGA
GTGGATACTACATGACGAACTTGTTGGAGCTTCTTGTCAATGTGAATTAA
ACAGTTTGAATTTCCTTAAGGGGAAACGTCGTAAATAGATGTTACCATTT
GAATTTTCAACATGGTGGATATGGGTTCGCCAACAAAATACCATCTTTCT
TCaacaagaagaaaacaaaatatgTCNTGGTGGATATGGGTTCGCCAACA
AAATACCATCTTTCTTCAACAAGGAGAAAACGAAGTATGTGGATGCAAAA
CAGTTGAAACGATACCAAATCCTTAGCCCTGATCCAAAATGGACGCAAAC
AGAAGTGAAAAAATATCACCAAGTTATAATGAAACTACGAAGTCATATCT
CAAAGATTGATGATTCAAAGGCTTTGTTTAGTATCAAGAAATTGGTggca
aaattattaaaattgcCGGAACCGAAATTTCAGAGCTCGATTTCATTGAC
GAATAATGATCAAAAGAGATCTTTCAGTAACCAGGTGTCATCAACGTGTT
TTCAAAAGGAGACAAAGGATCATAATGGTCGACTCTACCGTGCTTGTGGA
TACTGCAAAACAACTAAAGATCTCATTAACAAGTTACCAGagaaaatcat
tgaaatcacgTGTAACCATGGTGACGAGTCATCATGTTTCAGTTCATTTG
GTGAATGTGTACAAAAACATCGATTCGTAACCGTCCTCAAGAAAACTGGC
AAATgcatcaaattattgaattcACCAAACATTTGGGTGGATGAGTGGAT
ACTACATGACGAACTTGTTGGAGCTTCTTGTCAATGTGAATTAAACAGTT
TGAATTTCCTTAAGGGGAAACGTCGTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004637-exon-sc0000047-1491911889:472418..472466 | TCONS_00004637-exon-sc0000047-1491911889:472418..472466 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1510915933:472418..472466 | TCONS_00004637-exon-sc0000047-1510915933:472418..472466 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1575043694:472418..472466 | TCONS_00004637-exon-sc0000047-1575043694:472418..472466 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1491911889:473790..474586 | TCONS_00004637-exon-sc0000047-1491911889:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1510915933:473790..474586 | TCONS_00004637-exon-sc0000047-1510915933:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1575043694:473790..474586 | TCONS_00004637-exon-sc0000047-1575043694:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1491911889:475397..475630 | TCONS_00004637-exon-sc0000047-1491911889:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1510915933:475397..475630 | TCONS_00004637-exon-sc0000047-1510915933:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1575043694:475397..475630 | TCONS_00004637-exon-sc0000047-1575043694:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1491911889:477588..477690 | TCONS_00004637-exon-sc0000047-1491911889:477588..477690 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1510915933:477588..477690 | TCONS_00004637-exon-sc0000047-1510915933:477588..477690 | Clytia hemisphaerica | exon |
| TCONS_00004637-exon-sc0000047-1575043694:477588..477690 | TCONS_00004637-exon-sc0000047-1575043694:477588..477690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:472418..477690 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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