XLOC_002611 (gene) - C. hemisphaerica

Overview
NameXLOC_002611
Unique NameXLOC_002611
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000047:470516..477690+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002611 ID=XLOC_002611|Name=XLOC_002611|organism=Clytia hemisphaerica|type=gene|length=7175bp|location=Sequence derived from alignment at sc0000047:470516..477690+ (Clytia hemisphaerica)
GTAAAAGCAAACGAGCCAAAACAGATTTGGTAAAAACCTCTACGATTGTG
GATTGTCGACTTGCTTAAAAGGTAGGATACAAAATGTAAACACTCCATCT
TAGATCCCTTTAGTATCTTTTATACGGATTTGGCTTGGCATACCTGGAAA
TCCGTTGTTTTTCCGTTATTTATTGTCTCTATATTTTCCCTATTTTCAAG
CTAAGTTTGTAGGAAATTCTTTCAAGGAGGTCAGTCAATTGTAAACAACC
CTTTTGTATATCAAGCAATGCTTTTGAACATATGGTCATTTTGTTGGGCA
CTGTTACCGACTGGCTATCATTGTTAAAAATCGAAATGGCTTATGGGATA
TCAGATGATGATTTTTTGTTGCTCTGCAGGTGATGGGAGTCTGAGCTATA
AATCGAAATTCAACTTACAAAGAGAAAAATGCTGAAGTTTCTGGGAccct
tagaattttttttccaaaggttTTTAGCATTATTTGTAACAAATCTCTCG
GTAGTCTAGAAATAGTCGATTTATTTCGTGATTTTGTAACCCTCTCGCTG
CAAGATTTCTGTCTCTATATCAATATATCTTATCGGTAGAAAATTTTGTt
ggtaaaatttttatttgaaaacaccAAGAAACTGAGCAATTATTGTATTT
CCTTTAGTTTTAGTTTCTGTAGCAGGATCTTAGGTCGCAAATATAGTATA
GAAGTTTAGCACTCAAACATTCATGTTTAAACGAAAATGTTTAAAGtatt
taacacccctgtctcagtgtcccggtggagcttttccgctcaatggggat
gaaatttctatcgaaatcccaatggggatagaaaatctattaattttcag
ctcaaaaacgccaatttccaatggggataaaatcaaagagAGCAATTTTC
CGGTGTCCggccacccccccccctggtgaattcccccccagTAAATTCCC
ACCCAGTGAATTCACCCCTGTATTTTCATAtgtgttatgattttttagtt
caccaggggggaattcaccgggtgggaatcttccggggggaattcaccag
ggggaatTTACTAGGGGGAATTGTCCGGGAAtccaattttccagtggggt
tgaaattgtagggtatttctTCCATCGGTGACGAATTTTGGcttattttt
ccaccggggcggGGAGTCCACcagggtctgtgacacaggggtgttattca
AAATCATTTGGTATGACatatttgccaaaaaaaaattaatcgtcGGTCAA
CAAAATTCGGTTAAGGATACATAATACTGTCATGTAAGAAACTCCTTCCc
acagacccactgagacccaaaaaattgaccaaaatatcgtccccggtgga
aaatcaaCCTCCTATTTTTGTCCCCACACTGAAAACATTCAAATCGACCA
ATCCTCACTACAAAATATTATGATATTTTTCCCAtatccactgaattttc
tgacttgaaaacaaaagaatttaaacacccagccatgaaaaatatgggaa
tatcaacccCCTTCGAGTTTCAGCCCattatttctatccccactggctga
aaaaatcctaccgggtctgtgagaagggggtgttgtaaGCTTTTGAAATC
GTTTGATTGAAGTTAGCCAATCAGCGTCATTCGATACGCAGCTTTGATGG
TATTTTAAAGAAGTGTGAAAGCGTGGTTACAACAGTAATCTGTGACAGAT
TGAAAAATTACGATGACAACTATTAAAGAGGCTAAGCAAATCATAATGAC
GCAATCTTCGCAATCTTCCTTGTGATgcattttcaaccaataaatTAAGC
TTAAGTCCGAAGAAACATGCATTATGGTTTAACTCGCTTAAAAGTCCTGT
TTACTGGGAGTTAgtacaaaaagtaatgaatatgtAGGGGTGGTAGTCAC
ACCAAGGTTTGGGTTTGCGACGGTGAAATACGTCGCtgtttgatagttag
ggttagggtttgtcgttctttttgtcgctttttaatagttatttgtcgct
cgttttagatgatctggaaacgttagatggaGAGTCTCTTGGACACACAT
AATTTATATTTAAAGTGTTAAACCATGTGTTCTATTTTCATCCAGTTCTG
ACGCCATGTCGTGATAAAAATACTTGGAAAGAAGATGTAAAATCCTTTGG
ATTCAATTTAGAATTTAAACAAGGGgttatttctttgtttattttttgaa
atattttagttGATGTGTGTATTCCGTATCCTTTTTTGCAATGCAAATAG
TCTTTGTCGCGACCCCTAAAAATGTTGTTGGGAACtattaaaatttgatt
tgaaattcatggtttgtaatttttcaatgtttttgtggAGTTGACTTTAA
GGAGgccttttttttcaagaattataaCCATTTTTTTGTCAGTCATAACC
ATTGACCAGATTTGTTTACTTTGACAGGTCGTCGAATCTTGACTCGTTCT
TACAAACTTTTGTTTGCTtcatccccggggggggggggggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNct
tttttcgcaaatttcgagtcccacgtagggtccatttttcgaacctcagc
ggagcacccccgtcggtcgacaagggtagtacccccccccggggcttCAT
CCTCAGGAATAGTTAAAACCACGGCGTTCTAAATCACACTTTTTGGGCTT
GAGATTTAAAACACCATGGTTAACTTAAAGAGGTTTAATTTTCGTCCTTT
CTGTTTTTCCAAACTAGAATGCTCAAGACACCACAAAAATTATCCGATGT
TTTGTATTAATACGGGGATATACTTGTTATGCAGCCATTTTAATGTTTAC
ACATTTCCTGATGTGCGATATCCTTATCAACCAACCCTCGTACAATTTTA
CATGGAATTTATTATTCTTTATAGACGAAACACAATACGACCCAACATTA
CAGCAACAAAAATGATGATGAAATTTTATGCAGTTTTACTGGTCCTTCAA
TACCTAGCAACCAGAACCGAATCAAGAAATATAGAGACTGATATAAAACT
TCTTCATAAATTAGTACTGGACTTGATTGATGTGGAAATGAACTTACTTA
AATATGAAGAAGTCAACTCAATAGACTcgactgaaaataaaaaatcaatt
ttccataGACATAGTCTGAGTTCTAAATCAAATTTTCGTGAAAACGATAA
TGCCGAATTAAGTTATCAAAATGTTGTATGTTACCATTTGAATTTTCAAC
ATGGTGGATATGGGTTCGCCAACAAAATACCATCTTTCTTCaacaagaag
aaaacaaaatatgTCNTGGTGGATATGGGTTCGCCAACAAAATACCATCT
TTCTTCAACAAGGAGAAAACGAAGTATGTGGATGCAAAACAGTTGAAACG
ATACCAAATCCTTAGCCCTGATCCAAAATGGACGCAAACAGAAGTGAAAA
AATATCACCAAGTTATAATGAAACTACGAAGTCATATCTCAAAGATTGAT
GATTCAAAGGCTTTGTTTAGTATCAAGAAATTGGTggcaaaattattaaa
attgcCGGAACCGAAATTTCAGAGCTCGATTTCATTGACGAATAATGATC
AAAAGAGATCTTTCAGTAACCAGGTGTCATCAACGTGTTTTCAAAAGGAG
ACAAAGGATCATAATGGTCGACTCTACCGTGCTTGTGGATACTGCAAAAC
AACTAAAGATCTCATTAACAAGTAAGTTCCTTTTAAGACGTTGGTACAat
acaacatgctccatcccaccaacctgaaactctttctcgtgtctccaccc
catttttctttctactaATAAAAGATAGAGCTCACTTTTGTCCCAGAGAC
AAAATCGGCGTGTTTTtcgggtatttccctcactttttgtcacatgaaac
aaaaaagaagccCTGGGAcacgcatttttttgttttgatgggATGGAACA
TGTTGTCATACCATTTAGcgtatctcctaccatttgaTTACACATCATTT
TTAAACAACAGATAGAACTACTTTCTCCCCAGCGCCACACGAGCACAAAT
TGTGAGAAATTcttattctgctttgtcagcatagagaCGCCTTAAATAAA
GAATAAGATAATATCTCATTATGCGCCAAAAGCAAGCATCATTGCTGTAT
AGTGGAGAATAAGTATTTAATCCATGATTTTAAGGGCTACGCTATACTat
acaatatattgtcaggcaatacaTTGATGATATATCGCTGaatgccggca
atatattgaaaaggcgtcctcaatatattgtcaggttgatttgcaatttt
ccaacaatatagggggattgtttacagtaggaaaattccttttcataata
gagcacctgttatttacttcgtacatttTTTTATGGTCCAAAAacgatat
tgtcaaatattgtttgTCAATATATTGTTTAGTGTAAGTAGCCCTTTAGG
TTGTTCCCACAACATCCGCAGATACGAAACTCTCTGTAATCCAAACTATA
ATATTCATCCAATTTCATGCTCAATTTTCAGGTTACCAGagaaaatcatt
gaaatcacgTGTAACCATGGTGACGAGTCATCATGTTTCAGTTCATTTGG
TGAATGTGTACAAAAACATCGATTCGTAACCGTCCTCAAGAAAACTGGCA
AATgcatcaaattattgaattcACCAAACATTTGGGTGGATGAGTGGATA
CTACATGACGAACTTGTTGGAGCTTCTTGTCAATGTGAATTAAACAGTTT
GAATTTCCTTAAGGGGTAAGTGTGATTtcatgatacacgtttttttataa
gaacgaactatatagaagcataaggcttcgatggctaaaatattaagaac
aagttaagaacattttaagactttgtcgTTTCtgaacacccaatttctta
gactggcacgccagtcgagTTGGAACGGTATCACACGGGAAAAGTGAGCA
TAGGAGccaggtaagcgtaggaagaaattttgtcggcggcaaagGTTCTC
ATCAACTTTTTCTAGTTCCCCTACGCAGCTCATATTCCAACAAACGCcca
ccgcctttatgttcccaccctctgacatgattgattaacagactagtttg
ctggTCTAccaatttctaaataaaaaaaaaaactcaaaaagttaagaaca
tcccaaggcttgaaagttttttagatgtttttaaaaaacgtaaaagtaat
aaataattataattataaataaataatttctCAATTCTAATCTGATTAAT
TTTTCGCgagatttaagggctctgaccatagtccgaaaattgattttggt
atttgaacatgaaagttatatttcaggttccttaatacttttaacaaaga
attgcctttataaattgctttttaatcaaatcccttaagaatAATTAAGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttttg
tttcaaaatttctttacactgtccgcaaagaattgaactattttaaattt
tgcggaaaatttttctaaaaagatgtatcaaaagttatgactgtattttt
aagcaaaatccagatgaaaaattgatgaaaaaccactattttgaagattt
tgagacaaagaagcatttacaaaaattttccgcaaaaatatttattgttc
ggtaaaagatacacattctactgtgaaaattttttcaaaatgtttcttct
tcgccgaaacttatcacttcaaagttgaaatactcttcctcgcaaaagtc
ttcattttcttcctcatcaaattttttcaatgcaatttttNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNagaaaatgtataacatgccatagttttgttggttacatcagtc
agaaaacacattttaaacacggcaattatgaaaaattcactatggtcaga
gcccttaatttaaCAAGTCAAAAAGATCGCGGCGAAGTTctttggattta
ttttcgcgaagcagcgttttgtaagattttgcacagatttaatttcaaaa
tagatAAAGTTCTTACGTTCTTGACGTTTCGATTCATGGTGGAACAACTT
CAGAATGATTGTGGTGGATTCAATTTCGTTAATGAGCTGAATATCCTTGA
AAGTTGTTTTCTCATCGAAAGTAAAAACctcgtgaaaattaatccaagTT
TACCAATTTATTATTGGTGACTTTGACTTTTTATCCCAACTATTTCAAAT
GTAATTTTCACTGACTTCCAGCAAGTGCATTTTCATTTCtgttagttttt
ttctggaaaataaaaGTTTCATGTGCAATTAATCGAATTAGTACGTTACA
AGGAGGAGGGTGTATAAAATGTAAAcgaatttcaaaatgcatttatttct
taaaaatatattttcattccAGGAAACGTCGTAAATAGGTTGCAAATGTT
GATGAACAACCTTCAGGACGAACCACTTGGACACAATGCAAGGAAAAAGT
CGCCTTTGAAATGCATTAAGAAGAg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004636TCONS_00004636Clytia hemisphaericatranscript
TCONS_00004637TCONS_00004637Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004637-proteinTCONS_00004637-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:470516..477690 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.08	0.04	0	0	0.05	0.22	0.15	0.61	9.15	0.69	7.15	6.99	14.69	30.05	1.7	1.92	0.27	0.77	1.55	1.86	1.13	1.67	8.49	7.54	1.03	1.67	10.12	4.27