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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004636 ID=TCONS_00004636|Name=TCONS_00004636|organism=Clytia hemisphaerica|type=transcript|length=1205bp
GTAAAAGCAAACGAGCCAAAACAGATTTGGTAAAAACCTCTACGATTGTG
GATTGTCGACTTGCTTAAAAGACGAAACACAATACGACCCAACATTACAG
CAACAAAAATGATGATGAAATTTTATGCAGTTTTACTGGTCCTTCAATAC
CTAGCAACCAGAACCGAATCAAGAAATATAGAGACTGATATAAAACTTCT
TCATAAATTAGTACTGGACTTGATTGATGTGGAAATGAACTTACTTAAAT
ATGAAGAAGTCAACTCAATAGACTcgactgaaaataaaaaatcaattttc
cataGACATAGTCTGAGTTCTAAATCAAATTTTCGTGAAAACGATAATGC
CGAATTAAGTTATCAAAATGTTGTATGTTACCATTTGAATTTTCAACATG
GTGGATATGGGTTCGCCAACAAAATACCATCTTTCTTCaacaagaagaaa
acaaaatatgTCNTGGTGGATATGGGTTCGCCAACAAAATACCATCTTTC
TTCAACAAGGAGAAAACGAAGTATGTGGATGCAAAACAGTTGAAACGATA
CCAAATCCTTAGCCCTGATCCAAAATGGACGCAAACAGAAGTGAAAAAAT
ATCACCAAGTTATAATGAAACTACGAAGTCATATCTCAAAGATTGATGAT
TCAAAGGCTTTGTTTAGTATCAAGAAATTGGTggcaaaattattaaaatt
gcCGGAACCGAAATTTCAGAGCTCGATTTCATTGACGAATAATGATCAAA
AGAGATCTTTCAGTAACCAGGTGTCATCAACGTGTTTTCAAAAGGAGACA
AAGGATCATAATGGTCGACTCTACCGTGCTTGTGGATACTGCAAAACAAC
TAAAGATCTCATTAACAAGTTACCAGagaaaatcattgaaatcacgTGTA
ACCATGGTGACGAGTCATCATGTTTCAGTTCATTTGGTGAATGTGTACAA
AAACATCGATTCGTAACCGTCCTCAAGAAAACTGGCAAATgcatcaaatt
attgaattcACCAAACATTTGGGTGGATGAGTGGATACTACATGACGAAC
TTGTTGGAGCTTCTTGTCAATGTGAATTAAACAGTTTGAATTTCCTTAAG
GGGAAACGTCGTAAATAGGTTGCAAATGTTGATGAACAACCTTCAGGACG
AACCACTTGGACACAATGCAAGGAAAAAGTCGCCTTTGAAATGCATTAAG
AAGAg Run BLAST on NCBI transcript from alignment at sc0000047:470516..477690+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004636 ID=TCONS_00004636|Name=TCONS_00004636|organism=Clytia hemisphaerica|type=transcript|length=7175bp|location=Sequence derived from alignment at sc0000047:470516..477690+ (Clytia hemisphaerica)
GTAAAAGCAAACGAGCCAAAACAGATTTGGTAAAAACCTCTACGATTGTG
GATTGTCGACTTGCTTAAAAGGTAGGATACAAAATGTAAACACTCCATCT
TAGATCCCTTTAGTATCTTTTATACGGATTTGGCTTGGCATACCTGGAAA
TCCGTTGTTTTTCCGTTATTTATTGTCTCTATATTTTCCCTATTTTCAAG
CTAAGTTTGTAGGAAATTCTTTCAAGGAGGTCAGTCAATTGTAAACAACC
CTTTTGTATATCAAGCAATGCTTTTGAACATATGGTCATTTTGTTGGGCA
CTGTTACCGACTGGCTATCATTGTTAAAAATCGAAATGGCTTATGGGATA
TCAGATGATGATTTTTTGTTGCTCTGCAGGTGATGGGAGTCTGAGCTATA
AATCGAAATTCAACTTACAAAGAGAAAAATGCTGAAGTTTCTGGGAccct
tagaattttttttccaaaggttTTTAGCATTATTTGTAACAAATCTCTCG
GTAGTCTAGAAATAGTCGATTTATTTCGTGATTTTGTAACCCTCTCGCTG
CAAGATTTCTGTCTCTATATCAATATATCTTATCGGTAGAAAATTTTGTt
ggtaaaatttttatttgaaaacaccAAGAAACTGAGCAATTATTGTATTT
CCTTTAGTTTTAGTTTCTGTAGCAGGATCTTAGGTCGCAAATATAGTATA
GAAGTTTAGCACTCAAACATTCATGTTTAAACGAAAATGTTTAAAGtatt
taacacccctgtctcagtgtcccggtggagcttttccgctcaatggggat
gaaatttctatcgaaatcccaatggggatagaaaatctattaattttcag
ctcaaaaacgccaatttccaatggggataaaatcaaagagAGCAATTTTC
CGGTGTCCggccacccccccccctggtgaattcccccccagTAAATTCCC
ACCCAGTGAATTCACCCCTGTATTTTCATAtgtgttatgattttttagtt
caccaggggggaattcaccgggtgggaatcttccggggggaattcaccag
ggggaatTTACTAGGGGGAATTGTCCGGGAAtccaattttccagtggggt
tgaaattgtagggtatttctTCCATCGGTGACGAATTTTGGcttattttt
ccaccggggcggGGAGTCCACcagggtctgtgacacaggggtgttattca
AAATCATTTGGTATGACatatttgccaaaaaaaaattaatcgtcGGTCAA
CAAAATTCGGTTAAGGATACATAATACTGTCATGTAAGAAACTCCTTCCc
acagacccactgagacccaaaaaattgaccaaaatatcgtccccggtgga
aaatcaaCCTCCTATTTTTGTCCCCACACTGAAAACATTCAAATCGACCA
ATCCTCACTACAAAATATTATGATATTTTTCCCAtatccactgaattttc
tgacttgaaaacaaaagaatttaaacacccagccatgaaaaatatgggaa
tatcaacccCCTTCGAGTTTCAGCCCattatttctatccccactggctga
aaaaatcctaccgggtctgtgagaagggggtgttgtaaGCTTTTGAAATC
GTTTGATTGAAGTTAGCCAATCAGCGTCATTCGATACGCAGCTTTGATGG
TATTTTAAAGAAGTGTGAAAGCGTGGTTACAACAGTAATCTGTGACAGAT
TGAAAAATTACGATGACAACTATTAAAGAGGCTAAGCAAATCATAATGAC
GCAATCTTCGCAATCTTCCTTGTGATgcattttcaaccaataaatTAAGC
TTAAGTCCGAAGAAACATGCATTATGGTTTAACTCGCTTAAAAGTCCTGT
TTACTGGGAGTTAgtacaaaaagtaatgaatatgtAGGGGTGGTAGTCAC
ACCAAGGTTTGGGTTTGCGACGGTGAAATACGTCGCtgtttgatagttag
ggttagggtttgtcgttctttttgtcgctttttaatagttatttgtcgct
cgttttagatgatctggaaacgttagatggaGAGTCTCTTGGACACACAT
AATTTATATTTAAAGTGTTAAACCATGTGTTCTATTTTCATCCAGTTCTG
ACGCCATGTCGTGATAAAAATACTTGGAAAGAAGATGTAAAATCCTTTGG
ATTCAATTTAGAATTTAAACAAGGGgttatttctttgtttattttttgaa
atattttagttGATGTGTGTATTCCGTATCCTTTTTTGCAATGCAAATAG
TCTTTGTCGCGACCCCTAAAAATGTTGTTGGGAACtattaaaatttgatt
tgaaattcatggtttgtaatttttcaatgtttttgtggAGTTGACTTTAA
GGAGgccttttttttcaagaattataaCCATTTTTTTGTCAGTCATAACC
ATTGACCAGATTTGTTTACTTTGACAGGTCGTCGAATCTTGACTCGTTCT
TACAAACTTTTGTTTGCTtcatccccggggggggggggggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNct
tttttcgcaaatttcgagtcccacgtagggtccatttttcgaacctcagc
ggagcacccccgtcggtcgacaagggtagtacccccccccggggcttCAT
CCTCAGGAATAGTTAAAACCACGGCGTTCTAAATCACACTTTTTGGGCTT
GAGATTTAAAACACCATGGTTAACTTAAAGAGGTTTAATTTTCGTCCTTT
CTGTTTTTCCAAACTAGAATGCTCAAGACACCACAAAAATTATCCGATGT
TTTGTATTAATACGGGGATATACTTGTTATGCAGCCATTTTAATGTTTAC
ACATTTCCTGATGTGCGATATCCTTATCAACCAACCCTCGTACAATTTTA
CATGGAATTTATTATTCTTTATAGACGAAACACAATACGACCCAACATTA
CAGCAACAAAAATGATGATGAAATTTTATGCAGTTTTACTGGTCCTTCAA
TACCTAGCAACCAGAACCGAATCAAGAAATATAGAGACTGATATAAAACT
TCTTCATAAATTAGTACTGGACTTGATTGATGTGGAAATGAACTTACTTA
AATATGAAGAAGTCAACTCAATAGACTcgactgaaaataaaaaatcaatt
ttccataGACATAGTCTGAGTTCTAAATCAAATTTTCGTGAAAACGATAA
TGCCGAATTAAGTTATCAAAATGTTGTATGTTACCATTTGAATTTTCAAC
ATGGTGGATATGGGTTCGCCAACAAAATACCATCTTTCTTCaacaagaag
aaaacaaaatatgTCNTGGTGGATATGGGTTCGCCAACAAAATACCATCT
TTCTTCAACAAGGAGAAAACGAAGTATGTGGATGCAAAACAGTTGAAACG
ATACCAAATCCTTAGCCCTGATCCAAAATGGACGCAAACAGAAGTGAAAA
AATATCACCAAGTTATAATGAAACTACGAAGTCATATCTCAAAGATTGAT
GATTCAAAGGCTTTGTTTAGTATCAAGAAATTGGTggcaaaattattaaa
attgcCGGAACCGAAATTTCAGAGCTCGATTTCATTGACGAATAATGATC
AAAAGAGATCTTTCAGTAACCAGGTGTCATCAACGTGTTTTCAAAAGGAG
ACAAAGGATCATAATGGTCGACTCTACCGTGCTTGTGGATACTGCAAAAC
AACTAAAGATCTCATTAACAAGTAAGTTCCTTTTAAGACGTTGGTACAat
acaacatgctccatcccaccaacctgaaactctttctcgtgtctccaccc
catttttctttctactaATAAAAGATAGAGCTCACTTTTGTCCCAGAGAC
AAAATCGGCGTGTTTTtcgggtatttccctcactttttgtcacatgaaac
aaaaaagaagccCTGGGAcacgcatttttttgttttgatgggATGGAACA
TGTTGTCATACCATTTAGcgtatctcctaccatttgaTTACACATCATTT
TTAAACAACAGATAGAACTACTTTCTCCCCAGCGCCACACGAGCACAAAT
TGTGAGAAATTcttattctgctttgtcagcatagagaCGCCTTAAATAAA
GAATAAGATAATATCTCATTATGCGCCAAAAGCAAGCATCATTGCTGTAT
AGTGGAGAATAAGTATTTAATCCATGATTTTAAGGGCTACGCTATACTat
acaatatattgtcaggcaatacaTTGATGATATATCGCTGaatgccggca
atatattgaaaaggcgtcctcaatatattgtcaggttgatttgcaatttt
ccaacaatatagggggattgtttacagtaggaaaattccttttcataata
gagcacctgttatttacttcgtacatttTTTTATGGTCCAAAAacgatat
tgtcaaatattgtttgTCAATATATTGTTTAGTGTAAGTAGCCCTTTAGG
TTGTTCCCACAACATCCGCAGATACGAAACTCTCTGTAATCCAAACTATA
ATATTCATCCAATTTCATGCTCAATTTTCAGGTTACCAGagaaaatcatt
gaaatcacgTGTAACCATGGTGACGAGTCATCATGTTTCAGTTCATTTGG
TGAATGTGTACAAAAACATCGATTCGTAACCGTCCTCAAGAAAACTGGCA
AATgcatcaaattattgaattcACCAAACATTTGGGTGGATGAGTGGATA
CTACATGACGAACTTGTTGGAGCTTCTTGTCAATGTGAATTAAACAGTTT
GAATTTCCTTAAGGGGTAAGTGTGATTtcatgatacacgtttttttataa
gaacgaactatatagaagcataaggcttcgatggctaaaatattaagaac
aagttaagaacattttaagactttgtcgTTTCtgaacacccaatttctta
gactggcacgccagtcgagTTGGAACGGTATCACACGGGAAAAGTGAGCA
TAGGAGccaggtaagcgtaggaagaaattttgtcggcggcaaagGTTCTC
ATCAACTTTTTCTAGTTCCCCTACGCAGCTCATATTCCAACAAACGCcca
ccgcctttatgttcccaccctctgacatgattgattaacagactagtttg
ctggTCTAccaatttctaaataaaaaaaaaaactcaaaaagttaagaaca
tcccaaggcttgaaagttttttagatgtttttaaaaaacgtaaaagtaat
aaataattataattataaataaataatttctCAATTCTAATCTGATTAAT
TTTTCGCgagatttaagggctctgaccatagtccgaaaattgattttggt
atttgaacatgaaagttatatttcaggttccttaatacttttaacaaaga
attgcctttataaattgctttttaatcaaatcccttaagaatAATTAAGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttttg
tttcaaaatttctttacactgtccgcaaagaattgaactattttaaattt
tgcggaaaatttttctaaaaagatgtatcaaaagttatgactgtattttt
aagcaaaatccagatgaaaaattgatgaaaaaccactattttgaagattt
tgagacaaagaagcatttacaaaaattttccgcaaaaatatttattgttc
ggtaaaagatacacattctactgtgaaaattttttcaaaatgtttcttct
tcgccgaaacttatcacttcaaagttgaaatactcttcctcgcaaaagtc
ttcattttcttcctcatcaaattttttcaatgcaatttttNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNagaaaatgtataacatgccatagttttgttggttacatcagtc
agaaaacacattttaaacacggcaattatgaaaaattcactatggtcaga
gcccttaatttaaCAAGTCAAAAAGATCGCGGCGAAGTTctttggattta
ttttcgcgaagcagcgttttgtaagattttgcacagatttaatttcaaaa
tagatAAAGTTCTTACGTTCTTGACGTTTCGATTCATGGTGGAACAACTT
CAGAATGATTGTGGTGGATTCAATTTCGTTAATGAGCTGAATATCCTTGA
AAGTTGTTTTCTCATCGAAAGTAAAAACctcgtgaaaattaatccaagTT
TACCAATTTATTATTGGTGACTTTGACTTTTTATCCCAACTATTTCAAAT
GTAATTTTCACTGACTTCCAGCAAGTGCATTTTCATTTCtgttagttttt
ttctggaaaataaaaGTTTCATGTGCAATTAATCGAATTAGTACGTTACA
AGGAGGAGGGTGTATAAAATGTAAAcgaatttcaaaatgcatttatttct
taaaaatatattttcattccAGGAAACGTCGTAAATAGGTTGCAAATGTT
GATGAACAACCTTCAGGACGAACCACTTGGACACAATGCAAGGAAAAAGT
CGCCTTTGAAATGCATTAAGAAGAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004636-exon-sc0000047-1491911889:470516..470586 | TCONS_00004636-exon-sc0000047-1491911889:470516..470586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1510915933:470516..470586 | TCONS_00004636-exon-sc0000047-1510915933:470516..470586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1575043694:470516..470586 | TCONS_00004636-exon-sc0000047-1575043694:470516..470586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1491911889:473790..474586 | TCONS_00004636-exon-sc0000047-1491911889:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1510915933:473790..474586 | TCONS_00004636-exon-sc0000047-1510915933:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1575043694:473790..474586 | TCONS_00004636-exon-sc0000047-1575043694:473790..474586 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1491911889:475397..475630 | TCONS_00004636-exon-sc0000047-1491911889:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1510915933:475397..475630 | TCONS_00004636-exon-sc0000047-1510915933:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1575043694:475397..475630 | TCONS_00004636-exon-sc0000047-1575043694:475397..475630 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1491911889:477588..477690 | TCONS_00004636-exon-sc0000047-1491911889:477588..477690 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1510915933:477588..477690 | TCONS_00004636-exon-sc0000047-1510915933:477588..477690 | Clytia hemisphaerica | exon |
| TCONS_00004636-exon-sc0000047-1575043694:477588..477690 | TCONS_00004636-exon-sc0000047-1575043694:477588..477690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:470516..477690 + |
Blast
The following BLAST results are available for this feature:
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