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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047254 ID=TCONS_00047254|Name=TCONS_00047254|organism=Clytia hemisphaerica|type=transcript|length=3392bpRun BLAST on NCBI protein sequence of PDZ-domain protein inturned >TCONS_00047254-protein ID=TCONS_00047254-protein|Name=PDZ-domain protein inturned|organism=Clytia hemisphaerica|type=polypeptide|length=908bp MSVGTGNRYLWRENSQSYDGSYYSDNTSLQSQEHYYDGSYNSENNFFYSGRun BLAST on NCBI transcript from alignment at scaffold_123:499375..515228- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047254 ID=TCONS_00047254|Name=TCONS_00047254|organism=Clytia hemisphaerica|type=transcript|length=15854bp|location=Sequence derived from alignment at scaffold_123:499375..515228- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_123:499375..515228- >TCONS_00047254 ID=TCONS_00047254|Name=TCONS_00047254|organism=Clytia hemisphaerica|type=CDS|length=49086bp|location=Sequence derived from alignment at scaffold_123:499375..515228- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047254 vs. Swiss-Prot (Human)
Match: INTU (Protein inturned OS=Homo sapiens GN=INTU PE=1 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 9.470e-58 Identity = 140/431 (32.48%), Postives = 220/431 (51.04%), Query Frame = 1
Query: 862 IVVQGIIPNSPAGES-EINIGDIILAINGIKVNLQSVNSIVEKINGTQEIVLTIERLATVVEPEKPSELCSIVSNTLD----------EGAKEDVFHAYHDTCMVSLLTLNSNEDDVDGDILFWYPDSEKSKILRNTRGIFLTLSDMLTDVMAEHIQSSVLYTNKETINVAYKKCGGNVLVVAAPDHKCDLNTLISCTDDFAKLLTILNGDLNRAFTD-ENMESTRHETSLFLDLLLQRKPVVPFGT-------------------VRQLQLPTKQMIEISNVVSDVEAADYGECVDDFFPHQRLYGTIGTCLFYKDNLVCSHLTDENLQDVVTFCKYHWLFMLAKSEKMKQLVLWKEIFLTEKSGESPATKNSYET-PE-NARWFILVVGQGHSLFCTLLETGGAASIPEGNPGPHPYYVDTAWSILTYL 2055
+VV G++P A +S ++ IGD+++A+N + V +++ ++ I G ++ LT E V SNT D EG ++ + H M L L+S + +IL+ YP SE S+ L++ RGIFLTL DML +V + SS L N + I+VAY K +L++ P + L L + ++ + L + G L+ AF EN+ H +LF LQ + + VR L LP + +E+ +SD+EAAD+ E +D++ +RLY +G+ LFYK L+CSHL ++L D+ +C+++ L LA +++ QL++W+E+F + P +S E PE R+F+LVVG H + C LLE GG AS G+PGP YVD + L L
Sbjct: 208 LVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVTTENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQSNTSDLVKLLWGEEVEGIQQSGLNTPH-IIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTLCDMLENVTGTQVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDSAFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPLEIKMELDMALSDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLAAKQRIGQLIIWREVF--PQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQL 635 The following BLAST results are available for this feature:
BLAST of TCONS_00047254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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