PDZ-domain protein inturned (polypeptide) - C. hemisphaerica

Overview


Name	PDZ-domain protein inturned
Unique Name	TCONS_00047254-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	908

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047254-protein ID=TCONS_00047254-protein|Name=PDZ-domain protein inturned|organism=Clytia hemisphaerica|type=polypeptide|length=908bp
MSVGTGNRYLWRENSQSYDGSYYSDNTSLQSQEHYYDGSYNSENNFFYSG
ERRHSNFGDMIERSDSYCSTCPSEDYHTDSEDEDAAQKWPWISHIQDNGD
LIYVHTHHQHKHSHPRNHNHNHSNSNHHKPRTKSFLHKDNKEKGLQGKLK
NVIKKSRSFTKKDVIDKNIDISHFKNSEKKKQQNPLTDTTTEIQTITTDG
VHLLCKNVLIHLNDKVQESFANLENVIGVISGLDLDPVLDDFSDNILMNG
NSTRYNSNCIVVQGIIPNSPAGESEINIGDIILAINGIKVNLQSVNSIVE
KINGTQEIVLTIERLATVVEPEKPSELCSIVSNTLDEGAKEDVFHAYHDT
CMVSLLTLNSNEDDVDGDILFWYPDSEKSKILRNTRGIFLTLSDMLTDVM
AEHIQSSVLYTNKETINVAYKKCGGNVLVVAAPDHKCDLNTLISCTDDFA
KLLTILNGDLNRAFTDENMESTRHETSLFLDLLLQRKPVVPFGTVRQLQL
PTKQMIEISNVVSDVEAADYGECVDDFFPHQRLYGTIGTCLFYKDNLVCS
HLTDENLQDVVTFCKYHWLFMLAKSEKMKQLVLWKEIFLTEKSGESPATK
NSYETPENARWFILVVGQGHSLFCTLLETGGAASIPEGNPGPHPYYVDTA
WSILTYLIENMDYETSSHSRLEGPSIPAVVHATEAINPKTSASPRAIELI
KRKVPIQRRPHHDHLSISHSISNESDLGMRERSQSRTSNLSGNSSNRHYS
VHEMAPHFKQLSMASTSEVSTTAALATKLPTGSHNTLFYFTVLSNRNGVF
VSPNAFKSSNMLTGEILTNYTSACEKIHKWFEKKQLLPSEPLELGVLFHL
QLTKGAEMKKGFPNIRYWVVGRKMKKRNKCEEVYVCFQDGTPQNVIEMAF
KIRFGCHY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030096	XLOC_030096	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047254	TCONS_00047254	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001478	PDZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001478	PDZ domain	SMART	SM00228	pdz_new	coord: 224..316 e-value: 1.6E-7 score: 41.0
IPR001478	PDZ domain	PFAM	PF00595	PDZ	coord: 256..312 e-value: 4.0E-7 score: 30.2
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 260..314 score: 9.752
IPR001478	PDZ domain	SUPERFAMILY	50156	PDZ domain-like	coord: 256..314
None	No IPR available	GENE3D	2.30.42.10		coord: 102..317 e-value: 3.7E-12 score: 45.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 708..745
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..133
None	No IPR available	CDD	cd00988	PDZ_CTP_protease	coord: 250..314 e-value: 1.75413E-12 score: 63.784

Blast

[Close]

BLAST of PDZ-domain protein inturned vs. Swiss-Prot (Human)
Match: INTU (Protein inturned OS=Homo sapiens GN=INTU PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 7.503e-59
Identity = 174/608 (28.62%), Postives = 281/608 (46.22%), Query Frame = 0

Query:   91 WISHIQDNGDLIYVHTHHQHKHSH-PRNHNHNHSNSNHHKPRTKSFLHKDNKE-KGLQGKLKNVIKKSRSFTKKDVIDKNIDISHFKNSEKKKQQNPLTDTTTEIQTITTDGVHLLCKNVLIHLNDK------VQESFANLENVIGVISGLDLDPVLDDFSDNILMNGNSTRYNSNCIVVQGIIPNSPAGES-EINIGDIILAINGIKVNLQSVNSIVEKINGTQEIVLTIERLATVVEPEKPSELCSIVSNTLD----------EGAKEDVFHAYHDTCMVSLLTLNSNEDDVDGDILFWYPDSEKSKILRNTRGIFLTLSDMLTDVMAEHIQSSVLYTNKETINVAYKKCGGNVLVVAAPDHKCDLNTLISCTDDFAKLLTILNGDLNRAFTD-ENMESTRHETSLFLDLLLQRKPVVPFGT-------------------VRQLQLPTKQMIEISNVVSDVEAADYGECVDDFFPHQRLYGTIGTCLFYKDNLVCSHLTDENLQDVVTFCKYHWLFMLAKSEKMKQLVLWKEIFLTEKSGESPATKNSYET-PE-NARWFILVVGQGHSLFCTLLETGGAASIPEGNPGPHPYYVDTAWSILTYL 657
            W+  +Q NG+L Y+      + S  P     NH   + ++      +  D KE K  + KLK   K  R   +K ++ K        N +      P++    +    T   V    K+V +++N K       +E    LE ++G+I                       + +   +VV G++P   A +S ++ IGD+++A+N + V  +++  ++  I G  ++ LT E    V             SNT D          EG ++   +  H   M   L L+S     + +IL+ YP SE S+ L++ RGIFLTL DML +V    + SS L  N + I+VAY K    +L++  P  +  L  L +  ++  + L  + G L+ AF   EN+    H  +LF    LQ   +    +                   VR L LP +  +E+   +SD+EAAD+ E  +D++  +RLY  +G+ LFYK  L+CSHL  ++L D+  +C+++ L  LA  +++ QL++W+E+F   +    P   +S E  PE   R+F+LVVG  H + C LLE GG AS   G+PGP   YVD   + L  L
Sbjct:   55 WLDSVQKNGELFYLELSEDEEESLLPETPTVNHVRFSENE----IIIEDDYKERKKYEPKLKQFTKILR---RKRLLPKRC------NKKNSNDNGPVSILKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAKEQLKLLEVLVGIIHQTKWS-----------WRRTGKQGDGERLVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVTTENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQSNTSDLVKLLWGEEVEGIQQSGLNTPH-IIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTLCDMLENVTGTQVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDSAFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPLEIKMELDMALSDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLAAKQRIGQLIIWREVF--PQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQL 635

The following BLAST results are available for this feature:

BLAST of PDZ-domain protein inturned vs. Swiss-Prot (Human)

BLAST of PDZ-domain protein inturned vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
INTU	7.503e-59	28.62	Protein inturned OS=Homo sapiens GN=INTU PE=1 SV=2	[more]

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PDZ-domain protein inturned (polypeptide) - C. hemisphaerica