TCONS_00004345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004345
Unique NameTCONS_00004345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004345 ID=TCONS_00004345|Name=TCONS_00004345|organism=Clytia hemisphaerica|type=transcript|length=919bp
ATTAATATAAACGAAAGACGGGCGTTTCCATGTATATAAAATATTACGTC
ATATGAGATCGACATAATTTTTCAactacaattcatgatattcacgacgt
tatgttttctacggaaaaaccccggttttagccagtagtggcaactTTAA
ACTAGataaaagttgtataaaatttgccactactggcaaaaaccagggcc
tttccgtagaaaacattacgtcatgaatatcatgattAAACAAAAAGTAA
ACAATCAGTCAGTCTTTATCCCTCCTTATCAAAGCGACGGTTTAGCGTTG
AAATAATCAGCGAGTGTGACGTCAGAGATGCCACCATAGAAAGACAGCAC
ATTCACCGAAGTCAGATTCAGCTTCATGAAAGTCCAATGATGCTTAGTGG
GCCATTCCTTCATCGCTGGATGTCTTGTGAACATTGCAGCTTTGGCAAAA
GCAAGCTCGTTTGCATCGGTAACTGGCACTATGGCGCCGGTCAGCATAAT
TCGGCCACAAATTGGTTCCATAGGGTCTAGGTTGTGGGCTTCACAATAAT
CACTTTCAGCTTCACTGACTGTTAAAGATACAGTACTATTAACATCTATG
TTTTTCCACGTTGTAGACCATTGGGAAATGTAAAAATACGGAATTCCCGT
ACTGTGGTCTAACGGGCCGTCAGCGAAACTTTGTAAAGTACCGAACGGTT
GTTTGTAAATTTCGGAATAAGCAGAAACCACGCCCCAGTCGGCATTACTG
ATGATGTAGCGAGCGAATTGTGGTTTTTGGAAAACGCTAGGTCTTCCATG
CCAAGTATGTTGCAAAGAGGCGTTTATGAGaataaacaacaaaatcaaCG
GCTTTGATATCATGGTTCTTTCAATTATTTCAGATATTATATTAACGTGA
TTTGAATCTAAAACATGAC
Run BLAST on NCBI

protein sequence of TCONS_00004345-protein

>TCONS_00004345-protein ID=TCONS_00004345-protein|Name=TCONS_00004345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
HVLDSNHVNIISEIIERTMISKPLILLFILINASLQHTWHGRPSVFQKPQ
FARYIISNADWGVVSAYSEIYKQPFGTLQSFADGPLDHSTGIPYFYISQW
STTWKNIDVNSTVSLTVSEAESDYCEAHNLDPMEPICGRIMLTGAIVPVT
DANELAFAKAAMFTRHPAMKEWPTKHHWTFMKLNLTSVNVLSFYGGISDV
TLADYFNAKPSL
Run BLAST on NCBI

transcript from alignment at sc0000041:609030..609948

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004345 ID=TCONS_00004345|Name=TCONS_00004345|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at sc0000041:609030..609948 (Clytia hemisphaerica)
GTCATGTTTTAGATTCAAATCACGTTAATATAATATCTGAAATAATTGAA
AGAACCATGATATCAAAGCCGttgattttgttgtttattCTCATAAACGC
CTCTTTGCAACATACTTGGCATGGAAGACCTAGCGTTTTCCAAAAACCAC
AATTCGCTCGCTACATCATCAGTAATGCCGACTGGGGCGTGGTTTCTGCT
TATTCCGAAATTTACAAACAACCGTTCGGTACTTTACAAAGTTTCGCTGA
CGGCCCGTTAGACCACAGTACGGGAATTCCGTATTTTTACATTTCCCAAT
GGTCTACAACGTGGAAAAACATAGATGTTAATAGTACTGTATCTTTAACA
GTCAGTGAAGCTGAAAGTGATTATTGTGAAGCCCACAACCTAGACCCTAT
GGAACCAATTTGTGGCCGAATTATGCTGACCGGCGCCATAGTGCCAGTTA
CCGATGCAAACGAGCTTGCTTTTGCCAAAGCTGCAATGTTCACAAGACAT
CCAGCGATGAAGGAATGGCCCACTAAGCATCATTGGACTTTCATGAAGCT
GAATCTGACTTCGGTGAATGTGCTGTCTTTCTATGGTGGCATCTCTGACG
TCACACTCGCTGATTATTTCAACGCTAAACCGTCGCTTTGATAAGGAGGG
ATAAAGACTGACTGATTGTTTACTTTTTGTTTaatcatgatattcatgac
gtaatgttttctacggaaaggccctggtttttgccagtagtggcaaattt
tatacaacttttatCTAGTTTAAagttgccactactggctaaaaccgggg
tttttccgtagaaaacataacgtcgtgaatatcatgaattgtagtTGAAA
AATTATGTCGATCTCATATGACGTAATATTTTATATACATGGAAACGCCC
GTCTTTCGTTTATATTAAT

Coding sequence (CDS) from alignment at sc0000041:609030..609948

>TCONS_00004345 ID=TCONS_00004345|Name=TCONS_00004345|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000041:609030..609948 (Clytia hemisphaerica)
CATGTTTTAGATTCAAATCACGTTAATATAATATCTGAAATAATTGAAAG
AACCATGATATCAAAGCCGttgattttgttgtttattCTCATAAACGCCT
CTTTGCAACATACTTGGCATGGAAGACCTAGCGTTTTCCAAAAACCACAA
TTCGCTCGCTACATCATCAGTAATGCCGACTGGGGCGTGGTTTCTGCTTA
TTCCGAAATTTACAAACAACCGTTCGGTACTTTACAAAGTTTCGCTGACG
GCCCGTTAGACCACAGTACGGGAATTCCGTATTTTTACATTTCCCAATGG
TCTACAACGTGGAAAAACATAGATGTTAATAGTACTGTATCTTTAACAGT
CAGTGAAGCTGAAAGTGATTATTGTGAAGCCCACAACCTAGACCCTATGG
AACCAATTTGTGGCCGAATTATGCTGACCGGCGCCATAGTGCCAGTTACC
GATGCAAACGAGCTTGCTTTTGCCAAAGCTGCAATGTTCACAAGACATCC
AGCGATGAAGGAATGGCCCACTAAGCATCATTGGACTTTCATGAAGCTGA
ATCTGACTTCGGTGAATGTGCTGTCTTTCTATGGTGGCATCTCTGACGTC
ACACTCGCTGATTATTTCAACGCTAAACCGTCGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002425XLOC_002425Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004345-proteinTCONS_00004345-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004345-exon-sc0000041-1491911889:609030..609948TCONS_00004345-exon-sc0000041-1491911889:609030..609948Clytia hemisphaericaexon
TCONS_00004345-exon-sc0000041-1510915933:609030..609948TCONS_00004345-exon-sc0000041-1510915933:609030..609948Clytia hemisphaericaexon
TCONS_00004345-exon-sc0000041-1575043694:609030..609948TCONS_00004345-exon-sc0000041-1575043694:609030..609948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:609030..609948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.751545	0.883538	0.792653	0.886558	0.269686	0.372945	0.257161	0.421523	1.01168	1.77433	2.73483	1.19918	6.1494	5.42018	36.1483	27.9017	13.8858	15.6891	20.1998	13.6736	22.3046	20.6048	25.9088	25.0716	17.2918	18.4162	14.3314	16.9057	44.4223	49.5185
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012349Split_barrel_FMN-bd
Vocabulary: Molecular Function
TermDefinition
GO:0048037cofactor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0048037 cofactor binding
Blast
[Close]
BLAST of TCONS_00004345 vs. Swiss-Prot (Human)
Match: CREG1 (Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.915e-37
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = -3 
Query:  297 QFARYIISNADWGV---VSAYSEIYKQPFGTLQSFADGPLDHSTGIPYFYISQWSTTWKNIDVNSTVSLTVSEAESDYCEAHNLDPMEPICGRIMLTGAIVPVTDANELAFAKAAMFTRHPAMKEWPTKHHWTFMKLNLTSVNVLSFYGGISDVTLADYFN 770
            + AR++   +DWG    +S    +  +PF  + S +DGP    +G+PYFY+S    +  N+  N   +LT++ A++++C+ H  DP  P+C  IML+G +  V +  E+  AK ++F RHP MK WP+ H+W F KLN+T++ VL ++GG   VT  +Y+N
Sbjct:   57 RVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE-TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYN 216
The following BLAST results are available for this feature:
BLAST of TCONS_00004345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREG13.915e-3737.27Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1[more]
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