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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=transcript|length=793bp ATCAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAG AAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTA CCTCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATTTGA TCGGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACT AGTGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAGTGA AGAAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAGCGT TAACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGATAAC GATTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAAACG ACGTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGATTGGGAACCTAAA GAGAATggagaaagaaatttttatacCCCTTTGATTTGCGATGAATAATT TTATACACATAATTTGAGATTTAAACTGTGACTAAAATGATCCCACTAAA ATGATGAATCCAGGCTGTTGGATATTTCGGAATATTCCTTCAAAGACTAT GGGTCTGCAGGCTTGTGTAATGAATACTTGGAAAAATGGAACATTGATTT GAAATGATTGTGTATGTTCAACGTATATTGTGACCAAGTTGAACATACAG ATGTAAAAACCTTCGTTTTATGTAAtgtaaatatatttcaaaataattaa tcGAAACATACTCATAACGCTCAAAAAATAAGCAAGACCCAAG Run BLAST on NCBI protein sequence of TCONS_00043618-protein >TCONS_00043618-protein ID=TCONS_00043618-protein|Name=TCONS_00043618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
QDFVIGLSNCLHGDSEKKLQWAFRVYDNEEKGYLLEDELFNVLTYIYNLI GIKIQDDEKEKLMEHTSGLFELLDIDSDGRISEEEFVNGCLKNHDMVEAL TDYQPPVTDFILESDNDSVRSYCCHLTNGRVKRRQRSKSKLAQV Run BLAST on NCBI transcript from alignment at sc0004396:595..3056+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at sc0004396:595..3056+ (Clytia hemisphaerica) ATCAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAG
AAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTA
CCTCCTGGAAGATGTAAGAAACTGAACCCTTAAAATCAGAACTTATTTTT
ACGTATTAAGACCTCTTTCATGTTTCTTCTCGTGAGGGAAGGATATACAA
AATCGTTCGATTTTTTAATATGCTTGCGTTTGGTGGTGCAGGTTACTCCC
CACGCATCTAAAGGTTTGTAAAGCGAACCGTGAtgtagtggtagagcatt
cgtcTACGGtttgcaaggttgtgggttcaacccccagccggcgggtcata
ccaaagattctcaaaatggtacttgatgctcagcaattaagagaaggatc
aagggtaagtggagaaatccagggagaaagagtggcgtcctccatagtgt
cctcctgggttggttccccccactaaaaatcaaaatttttctccattccc
cctcttttatttcccccaccatatttcaaaatttttcggttccccccttt
tttttgaattcccccagctatttgaagattttgcggttccccatatggtt
aacataaaaatgccttaaatcaagtttgaaattttggaaaNNNNNNNNNN
NNNNNaatttcaaatttttcattttcccccatactttaaaaaaagggcca
aaatcagaatccccccctttataaagggggggggaggacactatggcctc
ccctaccttcgggtagatagctatcgaaagaggagccttcgggtcgcctc
cgactgcggtcgcagacttacttacttactaaagGTTTTGGCTGATAAAC
CCTACTGGGTACCATTTATCTGTAGGAATTTATTCGACTTCATTTTAACT
TATCCTAGGAATTGTTCAATGTTTTGACGTACATTTATAATTTGATCGGA
ATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACTAGTGG
TCTGTTTGAGGTGAGTGATGACTATAACCGTGCAAATTTTATGAAAGAGA
AATTTATGCTCAATTAAATTGAACAtcttaatgaaaaaaaagtcGGGATT
TATCCAAGTCGGGGAACATTTATAACACCTAACTTAGGAGATTCTAGTag
gggaaaattttggtcaCTAATGTTTTCCATATAATTATGGTCATAACACA
AACTGGTCCGTAAAcgagaaaataagaaaatattataatacacctttttc
cggttagccgtttcgtataaaaagtcaccaaaatttcgagtaaacaaacc
atctcattggctaaaagcaaaaacatgcCAATGGaatggtttgtttactc
gaaattttgttgactttttatATGAAACAGCTAACCGGAAAAAGGTGTAT
TGGATGAAACCTCAGAGGAGGGTCACCATTTGTTTATCTCCTTTCAGCTT
CTGGACATTGACAGTGATGGGAGAATCAGTGAAGAAGAATTCGTTAATGG
ATGTTTAAAGGTAAagacaaaatcaaaatcaaaatcttcagGGCTTTTCA
ACTTGTTTATACATAGTAAAATCTGTAAGTCAAGCATGTTTTCTTACTGC
TGGGTATATGCTTACCGGACCTCCGGAACCTGACCCTGAATTTAGCCGGA
AAGGTgactcttagagagactaaatTGCGACAATAGAGGGGCATTTTCAC
GACAAATCTAAGTATAAGTAACCCTATGAGAAGAAGCATGTTTTAGCTAT
GTCTGTGATTGAAACGTTCTCACTATCAACAAGCATATATATTCAAAGAA
TCTTATTTTTAAAGTCAGTTACCTAAAGCGCCGTAATGTTCAAATAaagg
agatattcgagttatagaaattctattgtatcACTAATATGGATATATAG
ATTCATTATTAAACAATTACAAAGTAAACTTTTCTCACAACTTTTAGAAC
CACGACATGGTGGAAGCGTTAACTGATTACCAGCCTCCTGTCACAGACTT
CATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTACTGTTGTCATCTCA
CCAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGTCCAAACTCGCACAA
GTATGATTGGGAACCTAAAGAGAATggagaaagaaatttttatacCCCTT
TGATTTGCGATGAATAATTTTATACACATAATTTGAGATTTAAACTGTGA
CTAAAATGATCCCACTAAAATGATGAATCCAGGCTGTTGGATATTTCGGA
ATATTCCTTCAAAGACTATGGGTCTGCAGGCTTGTGTAATGAATACTTGG
AAAAATGGAACATTGATTTGAAATGATTGTGTATGTTCAACGTATATTGT
GACCAAGTTGAACATACAGATGTAAAAACCTTCGTTTTATGTAAtgtaaa
tatatttcaaaataattaatcGAAACATACTCATAACGCTCAAAAAATAA
GCAAGACCCAAG Coding sequence (CDS) from alignment at sc0004396:595..3056+ >TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0004396:595..3056+ (Clytia hemisphaerica) CAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAGAA GAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTACC TCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATTTGATC GGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACTAG TGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAGTGAAG AAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAGCGTTA ACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGATAACGA TTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAAACGAC GTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGACAGGATTTCGTGATT GGGTTATCAAATTGTTTGCACGGTGATAGTGAGAAGAAATTGCAATGGGC TTTTCGTGTTTATGATAACGAAGAAAAAGGTTACCTCCTGGAAGATGAAT TGTTCAATGTTTTGACGTACATTTATAATTTGATCGGAATCAAAATCCAA GACGATGAAAAGGAGAAACTGATGGAGCATACTAGTGGTCTGTTTGAGCT TCTGGACATTGACAGTGATGGGAGAATCAGTGAAGAAGAATTCGTTAATG GATGTTTAAAGAACCACGACATGGTGGAAGCGTTAACTGATTACCAGCCT CCTGTCACAGACTTCATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTA CTGTTGTCATCTCACCAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGT CCAAACTCGCACAAGTATGACAGGATTTCGTGATTGGGTTATCAAATTGT TTGCACGGTGATAGTGAGAAGAAATTGCAATGGGCTTTTCGTGTTTATGA TAACGAAGAAAAAGGTTACCTCCTGGAAGATGAATTGTTCAATGTTTTGA CGTACATTTATAATTTGATCGGAATCAAAATCCAAGACGATGAAAAGGAG AAACTGATGGAGCATACTAGTGGTCTGTTTGAGCTTCTGGACATTGACAG TGATGGGAGAATCAGTGAAGAAGAATTCGTTAATGGATGTTTAAAGAACC ACGACATGGTGGAAGCGTTAACTGATTACCAGCCTCCTGTCACAGACTTC ATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTACTGTTGTCATCTCAC CAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGTCCAAACTCGCACAAG TATGACAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGT GAGAAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGG TTACCTCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATT TGATCGGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCAT ACTAGTGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAG TGAAGAAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAG CGTTAACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGAT AACGATTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAA ACGACGTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00043618-exon-sc0004396-1491911889:595..707 | TCONS_00043618-exon-sc0004396-1491911889:595..707 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1510915933:595..707 | TCONS_00043618-exon-sc0004396-1510915933:595..707 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1575043694:595..707 | TCONS_00043618-exon-sc0004396-1575043694:595..707 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1491911889:1503..1604 | TCONS_00043618-exon-sc0004396-1491911889:1503..1604 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1510915933:1503..1604 | TCONS_00043618-exon-sc0004396-1510915933:1503..1604 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1575043694:1503..1604 | TCONS_00043618-exon-sc0004396-1575043694:1503..1604 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1491911889:2042..2104 | TCONS_00043618-exon-sc0004396-1491911889:2042..2104 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1510915933:2042..2104 | TCONS_00043618-exon-sc0004396-1510915933:2042..2104 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1575043694:2042..2104 | TCONS_00043618-exon-sc0004396-1575043694:2042..2104 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1491911889:2542..3056 | TCONS_00043618-exon-sc0004396-1491911889:2542..3056 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1510915933:2542..3056 | TCONS_00043618-exon-sc0004396-1510915933:2542..3056 | Clytia hemisphaerica | exon |
TCONS_00043618-exon-sc0004396-1575043694:2542..3056 | TCONS_00043618-exon-sc0004396-1575043694:2542..3056 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0004396 | supercontig | sc0004396:595..3056 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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