TCONS_00043618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043618
Unique NameTCONS_00043618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=transcript|length=793bp
ATCAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAG
AAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTA
CCTCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATTTGA
TCGGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACT
AGTGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAGTGA
AGAAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAGCGT
TAACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGATAAC
GATTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAAACG
ACGTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGATTGGGAACCTAAA
GAGAATggagaaagaaatttttatacCCCTTTGATTTGCGATGAATAATT
TTATACACATAATTTGAGATTTAAACTGTGACTAAAATGATCCCACTAAA
ATGATGAATCCAGGCTGTTGGATATTTCGGAATATTCCTTCAAAGACTAT
GGGTCTGCAGGCTTGTGTAATGAATACTTGGAAAAATGGAACATTGATTT
GAAATGATTGTGTATGTTCAACGTATATTGTGACCAAGTTGAACATACAG
ATGTAAAAACCTTCGTTTTATGTAAtgtaaatatatttcaaaataattaa
tcGAAACATACTCATAACGCTCAAAAAATAAGCAAGACCCAAG
Run BLAST on NCBI

protein sequence of TCONS_00043618-protein

>TCONS_00043618-protein ID=TCONS_00043618-protein|Name=TCONS_00043618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
QDFVIGLSNCLHGDSEKKLQWAFRVYDNEEKGYLLEDELFNVLTYIYNLI
GIKIQDDEKEKLMEHTSGLFELLDIDSDGRISEEEFVNGCLKNHDMVEAL
TDYQPPVTDFILESDNDSVRSYCCHLTNGRVKRRQRSKSKLAQV
Run BLAST on NCBI

transcript from alignment at sc0004396:595..3056+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=transcript|length=2462bp|location=Sequence derived from alignment at sc0004396:595..3056+ (Clytia hemisphaerica)
ATCAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAG
AAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTA
CCTCCTGGAAGATGTAAGAAACTGAACCCTTAAAATCAGAACTTATTTTT
ACGTATTAAGACCTCTTTCATGTTTCTTCTCGTGAGGGAAGGATATACAA
AATCGTTCGATTTTTTAATATGCTTGCGTTTGGTGGTGCAGGTTACTCCC
CACGCATCTAAAGGTTTGTAAAGCGAACCGTGAtgtagtggtagagcatt
cgtcTACGGtttgcaaggttgtgggttcaacccccagccggcgggtcata
ccaaagattctcaaaatggtacttgatgctcagcaattaagagaaggatc
aagggtaagtggagaaatccagggagaaagagtggcgtcctccatagtgt
cctcctgggttggttccccccactaaaaatcaaaatttttctccattccc
cctcttttatttcccccaccatatttcaaaatttttcggttccccccttt
tttttgaattcccccagctatttgaagattttgcggttccccatatggtt
aacataaaaatgccttaaatcaagtttgaaattttggaaaNNNNNNNNNN
NNNNNaatttcaaatttttcattttcccccatactttaaaaaaagggcca
aaatcagaatccccccctttataaagggggggggaggacactatggcctc
ccctaccttcgggtagatagctatcgaaagaggagccttcgggtcgcctc
cgactgcggtcgcagacttacttacttactaaagGTTTTGGCTGATAAAC
CCTACTGGGTACCATTTATCTGTAGGAATTTATTCGACTTCATTTTAACT
TATCCTAGGAATTGTTCAATGTTTTGACGTACATTTATAATTTGATCGGA
ATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACTAGTGG
TCTGTTTGAGGTGAGTGATGACTATAACCGTGCAAATTTTATGAAAGAGA
AATTTATGCTCAATTAAATTGAACAtcttaatgaaaaaaaagtcGGGATT
TATCCAAGTCGGGGAACATTTATAACACCTAACTTAGGAGATTCTAGTag
gggaaaattttggtcaCTAATGTTTTCCATATAATTATGGTCATAACACA
AACTGGTCCGTAAAcgagaaaataagaaaatattataatacacctttttc
cggttagccgtttcgtataaaaagtcaccaaaatttcgagtaaacaaacc
atctcattggctaaaagcaaaaacatgcCAATGGaatggtttgtttactc
gaaattttgttgactttttatATGAAACAGCTAACCGGAAAAAGGTGTAT
TGGATGAAACCTCAGAGGAGGGTCACCATTTGTTTATCTCCTTTCAGCTT
CTGGACATTGACAGTGATGGGAGAATCAGTGAAGAAGAATTCGTTAATGG
ATGTTTAAAGGTAAagacaaaatcaaaatcaaaatcttcagGGCTTTTCA
ACTTGTTTATACATAGTAAAATCTGTAAGTCAAGCATGTTTTCTTACTGC
TGGGTATATGCTTACCGGACCTCCGGAACCTGACCCTGAATTTAGCCGGA
AAGGTgactcttagagagactaaatTGCGACAATAGAGGGGCATTTTCAC
GACAAATCTAAGTATAAGTAACCCTATGAGAAGAAGCATGTTTTAGCTAT
GTCTGTGATTGAAACGTTCTCACTATCAACAAGCATATATATTCAAAGAA
TCTTATTTTTAAAGTCAGTTACCTAAAGCGCCGTAATGTTCAAATAaagg
agatattcgagttatagaaattctattgtatcACTAATATGGATATATAG
ATTCATTATTAAACAATTACAAAGTAAACTTTTCTCACAACTTTTAGAAC
CACGACATGGTGGAAGCGTTAACTGATTACCAGCCTCCTGTCACAGACTT
CATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTACTGTTGTCATCTCA
CCAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGTCCAAACTCGCACAA
GTATGATTGGGAACCTAAAGAGAATggagaaagaaatttttatacCCCTT
TGATTTGCGATGAATAATTTTATACACATAATTTGAGATTTAAACTGTGA
CTAAAATGATCCCACTAAAATGATGAATCCAGGCTGTTGGATATTTCGGA
ATATTCCTTCAAAGACTATGGGTCTGCAGGCTTGTGTAATGAATACTTGG
AAAAATGGAACATTGATTTGAAATGATTGTGTATGTTCAACGTATATTGT
GACCAAGTTGAACATACAGATGTAAAAACCTTCGTTTTATGTAAtgtaaa
tatatttcaaaataattaatcGAAACATACTCATAACGCTCAAAAAATAA
GCAAGACCCAAG

Coding sequence (CDS) from alignment at sc0004396:595..3056+

>TCONS_00043618 ID=TCONS_00043618|Name=TCONS_00043618|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0004396:595..3056+ (Clytia hemisphaerica)
CAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGTGAGAA
GAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGGTTACC
TCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATTTGATC
GGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCATACTAG
TGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAGTGAAG
AAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAGCGTTA
ACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGATAACGA
TTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAAACGAC
GTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGACAGGATTTCGTGATT
GGGTTATCAAATTGTTTGCACGGTGATAGTGAGAAGAAATTGCAATGGGC
TTTTCGTGTTTATGATAACGAAGAAAAAGGTTACCTCCTGGAAGATGAAT
TGTTCAATGTTTTGACGTACATTTATAATTTGATCGGAATCAAAATCCAA
GACGATGAAAAGGAGAAACTGATGGAGCATACTAGTGGTCTGTTTGAGCT
TCTGGACATTGACAGTGATGGGAGAATCAGTGAAGAAGAATTCGTTAATG
GATGTTTAAAGAACCACGACATGGTGGAAGCGTTAACTGATTACCAGCCT
CCTGTCACAGACTTCATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTA
CTGTTGTCATCTCACCAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGT
CCAAACTCGCACAAGTATGACAGGATTTCGTGATTGGGTTATCAAATTGT
TTGCACGGTGATAGTGAGAAGAAATTGCAATGGGCTTTTCGTGTTTATGA
TAACGAAGAAAAAGGTTACCTCCTGGAAGATGAATTGTTCAATGTTTTGA
CGTACATTTATAATTTGATCGGAATCAAAATCCAAGACGATGAAAAGGAG
AAACTGATGGAGCATACTAGTGGTCTGTTTGAGCTTCTGGACATTGACAG
TGATGGGAGAATCAGTGAAGAAGAATTCGTTAATGGATGTTTAAAGAACC
ACGACATGGTGGAAGCGTTAACTGATTACCAGCCTCCTGTCACAGACTTC
ATTTTAGAGAGTGATAACGATTCCGTCCGCTCGTACTGTTGTCATCTCAC
CAACGGGCGCGTTAAACGACGTCAAAGGTCAAAGTCCAAACTCGCACAAG
TATGACAGGATTTCGTGATTGGGTTATCAAATTGTTTGCACGGTGATAGT
GAGAAGAAATTGCAATGGGCTTTTCGTGTTTATGATAACGAAGAAAAAGG
TTACCTCCTGGAAGATGAATTGTTCAATGTTTTGACGTACATTTATAATT
TGATCGGAATCAAAATCCAAGACGATGAAAAGGAGAAACTGATGGAGCAT
ACTAGTGGTCTGTTTGAGCTTCTGGACATTGACAGTGATGGGAGAATCAG
TGAAGAAGAATTCGTTAATGGATGTTTAAAGAACCACGACATGGTGGAAG
CGTTAACTGATTACCAGCCTCCTGTCACAGACTTCATTTTAGAGAGTGAT
AACGATTCCGTCCGCTCGTACTGTTGTCATCTCACCAACGGGCGCGTTAA
ACGACGTCAAAGGTCAAAGTCCAAACTCGCACAAGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027304XLOC_027304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043618-exon-sc0004396-1491911889:595..707TCONS_00043618-exon-sc0004396-1491911889:595..707Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1510915933:595..707TCONS_00043618-exon-sc0004396-1510915933:595..707Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1575043694:595..707TCONS_00043618-exon-sc0004396-1575043694:595..707Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1491911889:1503..1604TCONS_00043618-exon-sc0004396-1491911889:1503..1604Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1510915933:1503..1604TCONS_00043618-exon-sc0004396-1510915933:1503..1604Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1575043694:1503..1604TCONS_00043618-exon-sc0004396-1575043694:1503..1604Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1491911889:2042..2104TCONS_00043618-exon-sc0004396-1491911889:2042..2104Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1510915933:2042..2104TCONS_00043618-exon-sc0004396-1510915933:2042..2104Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1575043694:2042..2104TCONS_00043618-exon-sc0004396-1575043694:2042..2104Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1491911889:2542..3056TCONS_00043618-exon-sc0004396-1491911889:2542..3056Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1510915933:2542..3056TCONS_00043618-exon-sc0004396-1510915933:2542..3056Clytia hemisphaericaexon
TCONS_00043618-exon-sc0004396-1575043694:2542..3056TCONS_00043618-exon-sc0004396-1575043694:2542..3056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043618-proteinTCONS_00043618-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004396supercontigsc0004396:595..3056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.42998	1.83645	2.1323	1.68235	0.163848	0.194213	2.4212	2.92477	6.75741	4.75576	5.23153	4.89552	3.63624	2.43359	0.586425	0.629324	2.59945	3.92642	5.10167	5.06823	4.17026	3.26603	3.76133	5.636	4.76136	5.70467	0.749697	0.444498	1.68568	0.89307
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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