TCONS_00004275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004275
Unique NameTCONS_00004275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004275 ID=TCONS_00004275|Name=TCONS_00004275|organism=Clytia hemisphaerica|type=transcript|length=2344bp
CTTACattaataattattttcatatttactTTAGATGGATAAATAAGTTT
CAGTAAAGGAAAAATGAATAACAGAACTCAAGAGAAAACTCAACAGCATC
TGATTACCAAAGAAAGTCTACGCACATCAATATCAACCAGAGCCAAAACA
CCTTGTTGTGGATCCACTACCACCAAAGAAAATAATGATCAAATAGCTTC
TTCCTCTACAGCTGAAACAGAGCCAGCGACAGTTGTCAATTCAGCAACAA
AACCAAGATGTCGGAGACAGTGGGAACAGTGGAGTTGGGAAGAGAAAAAA
TGCTTTTACGAGGGACTTGCAGAATATGGCAAAGATTACAGCAAAATCCA
GTCTTTCATGAATAAAAAACTGAAACTGAAGAATTATAGTGATGgcaaaa
caaaagaacagaTCAGATTTTTTTACCATAGGACTTGGAGTAAAATTGCC
AAGAAGTTGAACTTGCAGCCTGAGGAGGATAGTAAGAAAGCTTGTAGGAG
AGAACTCCATTATTTGTTATGTCTTGGAGAACTTCGAAAGAAGCAATCTG
CTGGCTTTGGTGCAAAAGTGATGAAACAATTGGATGAACTTGCCACAAAA
GGAATTACCTATGTCAGATTGAATGGTCGCAATTTACGGGTGAGACCACC
CAATCGATATTTGcgcaaaatttacaaagataTAAGTGATTCACCAGAAA
TACAGCTACCTAAAACAGTAACGATAGAATTTCTACCAAACTCCAATATG
GCTTTCAATTTTGTACAGAAACATGCTTTCAACCCACGAATCAGGTTCAC
AGGTGTTAGTATTAATGCTagattttcagaagttttcgAAATGCTTAACA
AGAGGTTTATGGACGTATATACAAACACAAACTTGAACTTACAAATTTAT
CCAATGCAATCAgatacagatttttcaaaactactttcgaATGCTATTGA
ATTGTTAGCGACGTATGATAAAACACAAGTGACTGATATTGTTGTTGAAA
AAGATAAACCCAAGGATAATCTCCTTGTAGAGGACGTCACAATTGAAACC
ACGTGCACCGATAAAGAGCACCATCAAATGGAATTAGAGCAAGTTTTACC
GCAAATATTTGCAAAACATGGAGAGAAAGAAACACCAGATGGTGGTTCAT
CTGAAAAAGGCACCACATTAAAGAAGAGTAATTCTTTCCCAGGGTATTGG
ACCTATATTGATGCAAAGGAAATTTTCTTGAGGACGTTATTTGTTGTGTT
TgaacaaaaaccagtttttaaaTTCAAGTATGAGTGGAAACAGTCTGTCG
ATGAAAGTGTTGACAATTGCACCTTTAATAAAATGGCTTTacaaaattta
gccaaattgtGTGATGTGAAAAAGGAAGAGGACAGTGTCCCTCAAACTGA
TTCAAGAATGAGTGTGATTAGCCCGCTTCTGCAAAGCCCAAACTTTTTGT
ATGCTCGAAAACCAGGCGAGGGGGCAATTTCTACAACTCATCAGGATGGA
CATGGTTTAATGAATGGTACTTCTGGAAAATGGGTTTTGCCGAACAGACC
ACGCCCTGGAAGAATCAACAAATCACGACAACAACTTGGTAACAATATTG
CCGGTGTAACTAGTCCTTTGTTAGCTCTCTCTAGTGGTAAGGCCCAATGT
AAAACTGTGTTGAATAATGCTGTAGCAGTTAACTTAATCCCACAACATCA
ACAGAATCTTCTACACATGGCACATTTGCAGCACAATTCCAACAAACTTG
TCAACAATAGCGCTTCAACTGTTGTTCATGGAGTTCAAGATGAAGTAATT
GCTGAGGGATTTCAAGAACATTATCAAGCACTGGCCAACATGATCAAATC
TTCAGCTCTGGTCAAAGGACAACGAAACAATGAGAACAATAACTTCCTCA
AAACTCCTGTCAAAGTGAATCCGATTCCATCTAACATACCCGCTTCTCCG
AATCTGGAATGGCTTAATGAGactgTCGACATTTCGATGACCAGCTTTTT
AAATGTTTGTGACATGCAAGCCCTTCAAAATAAGagACAAGCAATGCAAT
CGAAAAATACGGCATCATCACTACACAATAATCTGAAACCAAATGTCTCG
CTTGATCCTGTCTTACCGAAGTTCGAATCCAGTGAAATTTCTCAAGGACC
TCTTTATGATTTGGCATTCGAATTGTCGAACCATGCTACTAAATCAAAAG
ATCAATACACNCCTTTATGATTTGGCATTTGAATTGTCAAACCATGCTAC
TAAATCAAAAGATCAATACACTGTCACGTGACACATTGTCAGTTTGTTTT
GGTTGTCATGGTAAGGACAAGGGATATTTAGCAGAACAACCAGT
Run BLAST on NCBI

transcript from alignment at sc0000041:291047..296715-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004275 ID=TCONS_00004275|Name=TCONS_00004275|organism=Clytia hemisphaerica|type=transcript|length=5669bp|location=Sequence derived from alignment at sc0000041:291047..296715- (Clytia hemisphaerica)
CTTACATTAATAATTATTTTCATATTTACTTTAGATGGATAAATAAGTTT
CAGTAAAGGAAAAATGAATAACAGAACTCAAGAGAAAACTCAACAGCATC
TGATTACCAAAGAAAGTCTACGCACATCAATATCAACCAGAGCCAAAACA
CCTTGTTGTGGATCCACTACCACCAAAGAAAATAATGATCAAATAGGTGA
CTCAACTTTCAGTCTTGTATTGATAACATGATAGATATTGTATAAACAAA
TAATTCACAATGCAGGATTTTGCATTGCAAAGCAACCAAGATTCTGGCCT
TGGGGCTGGAGCTGCATAGCATTTTTGCTTAATTTCTAAAAACTTTCTAT
AAGCACCCCTAATCATATCATACCATACCATTCAACTGCTACTGTTAAAG
TTTTTCCTTTACAAGATAATTAAAGAAATTAGCAACCTGGTTACTTACAA
AGAAAAATGTATATATTTGAAATGTTAGAACAGAAAAACTTTTTAGCTGA
AAAATATTTTTCCTTTAAAAATACAAGAATTTCTATAAAGTGTTATAGTA
AGAGCTGGCAGGAGATATTGAGTTTTATCACGTGCATCATCATTCGTTAC
TATGCACACCCCTGGTTTTATTTTAAGAAAAATTAAAGGCACTGTAAAAA
ACAAATGATTGACATTTATTTTTGACAATCTCTGCAATGTGTACTGATAT
TGTATAAGCAATGCAAAATATTTCTTTTTTTCCATCAGAAATGTAGGCAA
TTCGTTTCTATTCTTATTCAATACTTTTTTATAGCAAATCGTTCTAAATT
AATGGTCTGTATTATAGAATTTAAGAGAGTTTGTTTTGATGCTTCTAAAA
CTGCAATTTTTATTATATGCAAGCTCGGTACTTTTTCAAAGCGATTAAGA
CCTCACTATTAATGACAATCTGGCTTTAAACTTATTTTTGTTCTCTTGCA
GCTTCTTCCTCTACAGCTGAAACAGAGCCAGCGACAGTTGTCAATTCAGC
AACAAAACCAAGATGTCGGAGACAGTGGGAACAGTGGAGTTGGGAAGAGA
AAAAATGCTTTTACGAGGGACTTGCAGAATATGGCAAAGATTACAGCAAA
ATCCAGTCTTTCATGAATAAAAAACTGAAACTGAAGAATTATAGTGATGG
CAAAACAAAAGAACAGATCAGATTTTTTTACCATAGGACTTGGAGTAAAA
TTGCCAAGAAGTTGAACTTGCAGCCTGAGGAGGATAGTAAGAAAGCTTGT
AGGAGAGAACTCCATTATTTGTTATGTCTTGGAGAACTTCGAAAGAAGCA
ATCTGCTGGCTTTGGTGCAAAAGTGATGAAACAATTGGATGAACTTGCCA
CAAAAGGAATTACCTATGTCAGATTGAATGGTCGCAATTTACGGGTGAGA
CCACCCAATCGATATTTGCGCAAAATTTACAAAGATATAAGTGATTCACC
AGAAATACAGCTACCTAAAACAGTAACGATAGAATTTCTACCAAACTCCA
ATATGGCTTTCAATTTTGTACAGAAACATGCTTTCAACCCACGAATCAGG
TTCACAGGTGTTAGTATTAATGCTAGATTTTCAGAAGTTTTCGAAATGCT
TAACAAGAGGTTTATGGACGTATATACAAACACAAACTTGAACTTACAAA
TTTATCCAATGCAATCAGATACAGATTTTTCAAAACTACTTTCGAATGCT
ATTGAATTGTTAGCGACGTATGATAAAACACAAGTGACTGATATTGTTGT
TGAAAAAGATAAACCCAAGGATAATCTCCTTGTAGAGGACGTCACAATTG
AAACCACGTGCACCGATAAAGAGCACCATCAAATGGAATTAGAGCAAGTT
TTACCGCAAATATTTGCAAAACATGGAGAGAAAGAAACACCAGATGGTGG
TTCATCTGAAAAAGGCACCACATTAAAGAAGAGTAATTCTTTCCCAGGGT
ATTGGACCTATATTGATGCAAAGGAAATTTTCTTGAGGACGTTATTTGTT
GTGTTTGAACAAAAACCAGTTTTTAAATTCAAGTATGAGTGGAAACAGTC
TGTCGATGAAAGTGTTGACAATTGCACCTTTAATAAAATGGCTTTACAAA
ATTTAGCCAAATTGTGTGATGTGAAAAAGGAAGAGGACAGTGTCCCTCAA
ACTGATTCAAGAATGAGTGTGATTAGCCCGCTTCTGCAAAGCCCAAACTT
TTTGTATGCTCGAAAACCAGGCGAGGGGGCAATTTCTACAACTCATCAGG
ATGGACATGGTTTAATGAATGGTACTTCTGGAAAATGGGTTTTGCCGAAC
AGACCACGCCCTGGAAGAATCAACAAATCACGACAACAACTTGGTAACAA
TATTGCCGGTGTAACTAGTCCTTTGTTAGCTCTCTCTAGTGGTAAGGCCC
AATGTAAAACTGTGTTGAATAATGCTGTAGCAGTTAACTTAATCCCACAA
CATCAACAGAATCTTCTACACATGGCACATTTGCAGCACAATTCCAACAA
ACTTGTCAACAATAGCGCTTCAACTGTTGTTCATGGAGGTTTGTTTATTT
TCTGTTTACTCCAAAACAATTTTGTAGCCCATTGCGTTTTTTTGTCTTTT
AATATTAATAATAAAGTGAGAATCCTATCCCAAAATTTTCTTGTAGATTT
AAAAATTTCTGGTATGTATCAAAGAAAAACAGGTTACCTAGCTAAACATT
TGCATTGTTTGAAATTGTTGTTTCAGTTCAAGATGAAGTAATTGCTGAGG
GATTTCAAGAACATTATCAAGCACTGGCCAACATGATCAAATCTTCAGCT
CTGGTCAAAGGACAACGAAACAATGAGAACAATAACTTCCTCAAAACTCC
TGTCAAAGTGAATCCGATTCCATCTAACATACCCGCTTCTCCGAATCTGG
AATGGCTTAATGAGGTTGGTTATTACTGGTTATTACCATATTTTAAAGTT
ATCAGGGTGTAAAAAAACTCGTCCAGTTTTCTTAATTTGGGGCCTGGAAT
TCCCGAGTTATTTTTCCTAGTTATTTTTTTCCGAGTTATTTTTCCGAGTT
ATTTTGCATGTGACGTCATAATTACAGTTTTGTGCCGTCATTATGACGCC
ATAACAAAAATTATAACTCAATTTTTTAGCTTTTTTTAACTTTTCAAGTT
ATTTGGTGTTTTTAAACTCGGTTTTATTTCGTTCCTTTAACTTTTCGAAT
TATTTGATAAATTTTTAACTCGGTTTTTTATCGTGCCTTAAACTTTTCGA
GTAATTTGATAAATTTTAATTCTGGTTTTTTTTTCATGCCTCAAAGTTAT
CAAGTTATTTATATTATATTTTTATAGTAGATATTCGATTTATGGAAAAT
TCGACTTCTTTATTGGGTTTGTTACCTGAAGGGCAGATTTTTATTGAATA
AATCAAAAAATAACCCGAGTTTAAAAATACCAAATAACTCGAAAAGTTAA
AAGCTCAAAAAAATTCGAGTTATCATTTTTGCAGTGACGTCACAAAAACT
GAAATTATGACGTCACACACAAAATAACTNTAGCGCTTCAACTGTTGTTC
ATGGAGGTTTGTTTATTTTCTGTTTACTCCAAAAAGATTTTGTAGCCCAT
TGCGTTTTTTTGTCTTTTAATATTAATAATAAAGTGAGAATCCTATCCCA
AAATTTTCTTGTAGATTTAAAAATTTCTGGTATGTATCAAAGAAAAACAG
GTTACCTAGCTAAACATTTGCATTGTTTGAAATTGTTGTTTCAGTTCAAG
ATGAAGTAATTGCTGAGGGATTTCAAGAACATTATCAAGCACTGGCCAAC
ATGATCAAATCTTCAGCTCTGGTCAAAGGACAACGAAACAATGAGAACAA
TAACTTCCTCAAAACTCCTGTCAAAGTGAATCCGATTCCATCTAACATAC
CCGCTTCTCCGAATCTGGAATGGCTTAATGAGGTTGGTTATTACTGGTTA
TTACCATATTTTAAAGTTATCAGGGTGTAAAAAAACTCGTCCAGTTTTCT
TAATTTGGGGCCTGGAATTCCCGAGTTATTTTTCCTAGTTATTTTTTTCC
GAGTTATTTTTCCGAGTTATTTTGCATGTGACGTCATAATTACAGTTTTG
TGCCGTCATTATGACGCCATAACAAAAATTATAACTCAATTTTTTAGCTT
TTTTTAACTTTTCAAGTTATTTGGTGTTTTTAAACTCGGTTTTATTTCGT
TCCTTTAACTTTTCGAATTATTTGATAAATTTTTAACTCGGTTTTTTATC
GTGCCTTAAACTTTTCGAGTAATTTGATAAATTTTAATTCTGGTTTTTTT
TTCGTGCCTCAAAGTTATCAAGTTATTTATATTATATTTTTATAGTAGAT
ATTCGATTTATGGAAAATTCGACTTCTTTATTGGGTTTGTTACCTGAAGG
GCAGATTTTTATTGAATAAATCAAAAAATAACCCGAGTTTAAAAATACCA
AATAACTCGAAAAGTTAAAAGCTCAAAAAAATTCGAGTTATCATTTTTGC
AGTGACGTCACAAAAACTGAAATTATGACGTCACACACAAAATAACTCGG
GAATTCCAGGCCGCTCTGAATTTTACTGAGCGTCTGAATTATTAGTTTTT
ATTGAACAAATATTCCTCTTACATGAAACATCTTCACTTGGAATGTATAG
ACCGTCACTTTAACTGCTAAAACATCTCTGGTGAAAAATTTTACGCAAAC
AGGAGTATTTAAAAGGCCGCCCATGACAGATGACAGTACATACAAACATA
AGATTATTTGACAACTTTTATTTATTTTTCAGACTGTCGACATTTCGATG
ACCAGCTTTTTAAATGTTTGTAAGTTTCCTTTATTTCTTCTCTCATATTT
TGGCTTTAATTTTTTTTTCTCGGAAGTCTAACAAATGTATTTGAGAATAT
TTTCAATTAATAATATTCGTCATCTCAAAGAAGCTTGACATTTAAAGACA
CGTGTGCCCTTCTTGCCTCTAAGTGACAGTTGTTTCTCATCTTTGATAAA
CGATTTTTAACTTTTATCACTCCTTAATTTTCAGGTGACATGCAAGCCCT
TCAAAATAAGGTATGAAGTTTTTCTAATTTTATGTCTTTTCTCAACGAGC
TAGAATTTAACAATATCTGTCTTTCCGTCCGAAAACTTTGGGAAAGCCTG
GAGACTTGAAAATGGTCAGTTGGTTGAAATTTGGCAAATTTCTTCCTTGT
GTTAATACTAAGAAGTGTTTTTTTTTTCATTTCTCAAATTTTTTTGTGTT
TTGGGCCTTGGTAGGAGTTTTTTACAAAACTGAGGATAAAACTTTTTATT
CGACTGGATTTCTAGAAGCCTCTGAAATGACTGTCTGAGGAACCTTTTTC
TTTTTACAGAGACAAGCAATGCAATCGAAAAATACGGCATCATCACTACA
CAATAATCTGAAACCAAATGTCTCGCTTGATCCTGTCTTACCGAAGTTCG
AATCCAGTGAAATTTCTCAAGGACCTCTTTATGATTTGGCATTCGAATTG
TCGAACCATGCTACTAAATCAAAAGATCAATACACNCCTTTATGATTTGG
CATTTGAATTGTCAAACCATGCTACTAAATCAAAAGATCAATACACTGTC
ACGTGACACATTGTCAGTTTGTTTTGGTTGTCATGGTAAGGACAAGGGAT
ATTTAGCAGAACAACCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002375XLOC_002375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004275-exon-sc0000041-1575043694:296520..296715TCONS_00004275-exon-sc0000041-1575043694:296520..296715Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1575043694:294178..295764TCONS_00004275-exon-sc0000041-1575043694:294178..295764Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1575043694:293802..293989TCONS_00004275-exon-sc0000041-1575043694:293802..293989Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1575043694:291897..291933TCONS_00004275-exon-sc0000041-1575043694:291897..291933Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1575043694:291656..291681TCONS_00004275-exon-sc0000041-1575043694:291656..291681Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1575043694:291047..291356TCONS_00004275-exon-sc0000041-1575043694:291047..291356Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:296520..296715TCONS_00004275-exon-sc0000041-1510915933:296520..296715Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:294178..295764TCONS_00004275-exon-sc0000041-1510915933:294178..295764Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:293802..293989TCONS_00004275-exon-sc0000041-1510915933:293802..293989Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:291897..291933TCONS_00004275-exon-sc0000041-1510915933:291897..291933Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:291656..291681TCONS_00004275-exon-sc0000041-1510915933:291656..291681Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1510915933:291047..291356TCONS_00004275-exon-sc0000041-1510915933:291047..291356Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:296520..296715TCONS_00004275-exon-sc0000041-1491911889:296520..296715Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:294178..295764TCONS_00004275-exon-sc0000041-1491911889:294178..295764Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:293802..293989TCONS_00004275-exon-sc0000041-1491911889:293802..293989Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:291897..291933TCONS_00004275-exon-sc0000041-1491911889:291897..291933Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:291656..291681TCONS_00004275-exon-sc0000041-1491911889:291656..291681Clytia hemisphaericaexon
TCONS_00004275-exon-sc0000041-1491911889:291047..291356TCONS_00004275-exon-sc0000041-1491911889:291047..291356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:291047..296715 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.14389	4.98101	2.13506	1.80393	7.34234	3.8179	2.81811	4.57836	3.53544	5.22084	3.58079	4.02548	2.87869	3.03545	2.38683	4.77685	5.41988	4.49731	1.76645	1.90391	3.68689	2.95611	5.68839	9.79436	0.938498	0.251023	2.57476	1.477	7.43202	9.17913
Blast
[Close]
BLAST of TCONS_00004275 vs. Swiss-Prot (Human)
Match: CRML (Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.118e-32
Identity = 85/210 (40.48%), Postives = 117/210 (55.71%), Query Frame = 1 
Query:  256 RCRRQWEQWSWEEKKCFYEGLAEYGKDYSKIQSFMNKKLKLKN--YSDGKTKEQIRFFYHRTWSKIAKKLNLQPE-EDSKKACRRELHYLLCLGELRKKQSAGFGAKVMKQLDELATKGITYVRLNGRNLRVRPPN-RYLRKI-----YKDISDSPEIQLPKTVTIEFLPNSNMAFNFVQKHAFNPRIRFTGVSINARFSEVFEMLNKRF 858
            + RRQWE WS E+K  F+EGL E+GKD+  IQ+ +  K K K    S  K KEQ+R FY+RTW KI K ++         K   +EL+ L+C GELRKK       K   +L+EL   G T VR  GRNLR++ P  R L+K+       D  D   ++LP  V IE  P +N A+  VQ  A NPR+R   V ++ + S + E L +++
Sbjct:  158 KVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRHFYYRTWHKITKYIDFDHVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGRNLRIKAPMCRALKKLCDPDGLSDEEDQKPVRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMI-VELHRKVSSLIEFLKQKW 366
The following BLAST results are available for this feature:
BLAST of TCONS_00004275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRML1.118e-3240.48Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=... [more]
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