TCONS_00004265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004265
Unique NameTCONS_00004265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004265 ID=TCONS_00004265|Name=TCONS_00004265|organism=Clytia hemisphaerica|type=transcript|length=786bp
CTATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCATACATCAGCACTA
CCCACGAGTTTCAGgtgaagatttttatttttcttgttcgAAGATTCCCA
CACCATTTTTCTTATCAAATTTATCACGGCAGTGGACCATGTTTAAGAAa
TTTGTTGCGAAAGATGAAATCTCTGGAACAAGTCAGTTGAAGTCATCAGT
ACAACGTGGCATCAGAACAAAACTTCAAGAACACTACCCAAACATACAAC
CTTATATTGATGAAATCCTCCCAAAAAAAGAAAGCATTGTCCTTGTTAAA
TGTAAAGAACACATCGAAATATTAGCAGTAAAATCACAGCTGGTGTTTTT
CAGACAGCGTGATGGTCCTTGGATACCAACTTTAAGACTTCTTCATAAAT
ATCCATTCTTACTAACACATGAACAAGTGGATAAAGGGGCAATCCGCTTC
ATATTGAGTGGAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTGC
GAAAATGACACCAGTTGAAAAAGACACAGTAGTTGCCATAATGGCAGAGG
GAAAAAAACACGCTGTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAA
ATAGCGGAAAAGAATAAAGGCATAGGGGTGGATAACGTCCATTATCTTAA
TGATGGATTATGGGTAATGAAAAACCTGGACAAATAGAAGAAGTATCAAA
Tttcgttttatttatttttcaaacaataatttttttgtacatttttattt
gaaatttacaAATACTTACAAAAAACCTAACCGAAT
Run BLAST on NCBI

protein sequence of TCONS_00004265-protein

>TCONS_00004265-protein ID=TCONS_00004265-protein|Name=TCONS_00004265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
LCSKVRIPIIEAIHQHYPRVSGEDFYFSCSKIPTPFFLSNLSRQWTMFKK
FVAKDEISGTSQLKSSVQRGIRTKLQEHYPNIQPYIDEILPKKESIVLVK
CKEHIEILAVKSQLVFFRQRDGPWIPTLRLLHKYPFLLTHEQVDKGAIRF
ILSGANIMCPGLTSPGAKMTPVEKDTVVAIMAEGKKHAVCIGSTKMSTQE
IAEKNKGIGVDNVHYLNDGLWVMKNLDK
Run BLAST on NCBI

transcript from alignment at sc0000041:107936..118535-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004265 ID=TCONS_00004265|Name=TCONS_00004265|organism=Clytia hemisphaerica|type=transcript|length=10600bp|location=Sequence derived from alignment at sc0000041:107936..118535- (Clytia hemisphaerica)
CTATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCATACATCAGCACTA
CCCACGAGTTTCAGGTGAAGATTTTTATTTTTCTTGTTCGAAGATTCCCA
CACCATTTTTCTTATCAAATTTATCACGGCAGTGGACCATGTTTAAGAAG
TAAGTAGAAATGTCTTTTCTTTGGTCTTTATGTCCTTATTATATTTATTC
ATATCTTACAGTAGGAAAAACCTGGCGCCGCCGCCGGACCGCAACAAAAA
CCTGTTTTCTGGAAATCCTATCCTATTCTTTTTTTTATGATGGGGATCAA
GGCTCGAAATAACGATTTCAAGTGGGTCGGACAAAATGTCCAATCAGGGT
TGCTTTAGCTTGAAAATTTTGATTTTTGGGTCGAACATGAAGCTATTTGG
GTCGGACAATGTCCGATGTCCAACCGTGTTATTTCGAGCCCTGGGGGATG
GATGGCTTCAAAAACATATAAATGCATAGCTGTGAACTCTCCTTTAATAG
TCAAGACAAGACTCCTGAATCTGGAAACTTTTTCGTGAATGTAAAATTTG
CTCCAAAATCTCCTGGATTTTTGAGATTTTTAATCATGGTTTTCTGAAAA
AATCTGGAAATTTTCCCTGATGATTTTTGAATATTATTTGGTCAGTGACC
ACCTATCGATTTTATCAGTGGTCAAATACCGTAAGTTGGTCTAATATCGA
CATCCCTCGTCTAATTTCGACACCCTTCTTTAGAGACGGGAATAATATGA
AAGCTTGAATCAGTCAGGCGGCAATCAAAAATATGTTGCGTTCGGGTCGT
CCGACCGACTGTTTATTTACAAGAAAACCCGATTCGGAAAGTCGGTAAAA
TCGTCGGGTTTTTTTGGCACTGTTCGCAGGTTCGGATCTTTCCCATAATG
GCGGGCACGGGCGAACGGAGCATGTCTTTGAATCATTTTTTTTTTACTTA
ACCCACATTGAGTCCCGTTCAAGTTTTTTCATGTACCCTTATTGAAAATT
TCATGTCAAAATTCAGCAACGCGGTAGGGCCAATACCCTGGGGGCCAAAA
ATAAGGGCCACTTTAAGGTTAATACATGCGCGCGCACATTTAGTTTGGCA
AATTAAAGATGGCGGCATAAGATTCTGTTGATTGCCGACTTGATTCATCG
GGATTTACTAGATCTTAAAAATTCGACAAAATTTACTAACCGACCGACCG
ACCGACTGGATTTGAAGATGTTTTAGGGCCCGAATGGAACATATTATTGA
TTGCCGCCTGAGGCTGGAACTTCGATTTTTGAGGATTACGATTTTACCAG
CTTTTTAGCGATTTTTGCCTCGCTAACCCAAATCTTGCAACCTCTTTACC
TTAAAGAAGATCAAAATTAGAGTTTTTCAGCAATCCGAAAAAAATGCATA
GCAGAAATTTTTTCATTTTCACAGGATCGATTGTCAACAACAAAATACAT
CTTTTGGTCTTTGGGTTTGTTTCTGACGTTTTTCCTTCAAAGAATATTAA
TCACTTTCCTTTTCCCCTTGAGCGTGCGAGGAAAAAATGATTAGCTCGCG
TTCTCGCGCGGACGAATAAAAATGAGGCGGCAATCTTGCAATGAGGGTGC
TACTTAGTTTTCGCCCTATTTTGCGCCCACGATAGAATGGTCCAAATACG
GGGGTATTCTAAATGATAAACTATGTCGTTCTGTAAGTGTTTATTTTCTG
AGAGATACAAATAGTGTATTGAATAATTATTAACTTATTGTTTTAAGTAT
TTTTGAGTGCAAATTTAAATATATAGTTAAATAAAAAACAAATGATAGCA
GTTCTGTTTTTTCCTCAAACCTCCGGGAAAAGTTTTTTTGCCGACTTAGC
TATTTTACAAATCTCGGAAAAGAACTCCATTAGGAATTCGGATACAGAAC
CTGATTGGTTAATTTCGGAACGGCTTCAAGAAAGTCATAATGGCAGATAA
TTTTAAAAGTTTCTGAGGAAATGTGTGTAATTTATCAATGTTGATGGCTT
GTTGATTCCTTAAAGAAAAAAGATAACAGGTATAGCTTTTTCTAATCCTG
GAATATCGAGGTTCCAGCTACACTGTGAATCATTGATTGAAAAACAAAGA
TCAATCTCTTAGCACTAAGCAAAGAAAACAGTTTTAACTTTTCTATCAAT
TTCAGCTGATAAAAAGGATGTAGAGATTAGAGGAGGGATGTCGACATTAG
ACCAAGTTACGGTAGTCACTTGGCTCCAAATTATGGCATTTTCTTCAACC
ATTTTTTATTTGTTCAGTCATTTCGATTACTTTTCGATTACTTTTGTGAT
CATTACCGTGAAGTTGGGTAACTTGCATCAGTGGAGGGAAACTTGCATAG
CCCTCAAATGAATGACCTGGCTGGTCATTAAAATACAAATCAAAATAAAA
TGGTAGAATAGAGCTGCGAGCGGAGCTGCATAATTCAATTGTTTTGACAT
TTTGCTGCTTTGGTTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCTCC
ACTGATGCAAGTTACCCGACTTCACGGTATTGAAATACAGACTGCATGAG
AGATAAAAATTTCCAAGTGAAATCCGAAATCTTAGCCCGGTTTTCTGATT
TTCCTAAATCAGAAAATCAGGGAAACTTCTTTCCAAAAACCAGGATATCA
GCAAAACATTTTTGCCGAAATCGGAGAATCGAGGAAATATTTTTTATATT
TCAAAAATGCGTGAGATAGCGTGAGAGATCAAGTTTTTTTTTAATTGCGT
GAGACAATGTTGAAAGTTGGTCTAATATCAACATCCCTCATCTTATTTTG
ACACCCTTCTTTAGAGATGGGAATAATATGAAAGTTGGAATCACTGATTG
AAAAAGGATTTTTCCTCTCTGATCACTAAAGCAAAGAAAAAAGGTTTCAA
CCTTTATTATTTTCAGCTCAAAANTATCACTAAAGCAAAGAAAAAAGGTT
TCCGCCTTTATTATTTTCAGCTCAAAAAACTTCCAAAAAAAACCCAGCAT
TTTTTAATGAAATTAACATTTTCAAAAAACTATGAGAAATTGATAGCTAA
AAATAAAAACTGCATTTTTGAAAGAATGAAACATTTTTTATATTATGTAT
TGTATATTAGTTTTCTCAGTCCATTTTCTTTTTCGTTCTTTACCGTGCGG
ACATCTGCACAGCATTTCAGACTTTAGGTGTCAAACCAGGTTCTGAGTGT
ACTTTTTGAAAATTTGTGTTTTTTGGTACAACATATTGATACTTGCCTTT
TGTCGTTTGTCTTGTTCTTGTCTCTTTGAACAGGCTAGCTCTAAAGCTCT
AAAACAGCATCTAATAACATGAAAACCAGAAAATGATTCTTTGATGGGAA
TCAAAACTATAAAGTGTACTTACAAACATCAAGATGTCAGATCTAAGAAA
ATTAATAACGGCACAGTCATCATTGACAATAAAAAAAAGGATTTTCCGTC
AAGGAGTCTTGTAAACATTCCAACAACTTCCATCGAAATGATCTGTCACA
GCTGAGTCTACCATTTTTAACACGGTCCGAGGATTGAGCTGAGGACGCTC
GCAGAACACCCGCGAGCTCCCGCGCTGGTGAAAGATTTAATCTGGCAATC
ATTTTCTCAAGCGAAGAGTACGCGAAGCAATTCTAGCTTCACGATAGTGC
TGCGGATCATCAGTGGATATTATTCAATCATCATTATCCCTTTATTTTCA
TTCCTAGAACTTTTGCAAAAAAAGAAAAAATAGAAAAGTTGTATTTTTTA
CTGCTCTATTCACATACTGAATTTGAAAGATCTTCTATGTGGCGTTTTTT
TGCAAACTTCAAAAAACTGATTTTTGTCCCGTCTTTGCAGGACTTTCGCT
TAAGTGCTTGTGTGCATAGGGTACAAAGTCCAAATATGCGTTTCCCGTAA
TTTTTGTATGAAGAGTTAGGTCCATACTGTTGAACTTATTTGTTTTGTCT
GTTGTTTAACCTTTTTTGTTTTTTTTGTATTTGAATGCAAGTTTTTGTAT
ATTTTTTTATGTTTGTTAGTTTGTTTGGACTGCGGGTCTGTTCAGGGTTC
CGGAATCTGGGGAGGCTGAGTGTTGGACGTCCTTAAAACATGTTTAAAGC
CGCTGGCCCACCTGTCGCAAGTCGGGGCTGGTTGGGGACTCCAGATTACA
TTATAATTTTTGTTGGGCTTTTGGGTAGTTTTTAGTGTTTGTATTTGTGT
GATTGCTGTGTTTATATTTCTACTTAGCTATTTAAACTAAGTCCCTTTTT
ATGTTTCATTTTAATTTTATTTAGTATTTTCAACATTTAATCTCCTTTAG
GTCAGATCTCTGATCTTTATATGAAAAAATTTGATCTGAGCCAGTTTTGA
AAACTAATTTGATGATCAACTTCCCAAGAAAAAGATCTAGGTGGAGAGTG
CAACCCCGGTTAGGCTATTTTTCTGGACCTCAAACACTGACTCATTTACA
TGTGCTGAATTATTTTTACTTTAGCATTTAGTTAAGTCCTAAGAAATCGA
AGTGCTATCTTGGGAATTTGGTAATTGGTCATTTTGGTCATTTCTAGTTT
TAATAATTGTCTTGGGATCTTGAATTTGATTCAGGTAACTCTCATCCTTG
TTGTTGCAAATACATACTGTAGATGATTGATGTCGTTTTTTCTGAAAGCT
TGATTTCTTAGTGTGACTGACTTGAGGAAACCCAGGGCAAACGCACACAA
AATGGCCGGGTAATTACTTAAGGTCATTCTTATGGTTGGCGCTTCTTTTT
GTGGTTTAAGGTCAATGTTTTTGGTTTTTCTTAAAGATATCTATATGTAA
TCAATTGGTTATCTAGGTAATCAATGGTCCCTTCTTGGCATCCCCCCAAC
CTTTAAAAATACCTATCCCCCAAAGATTTTGGACAAAAATAGCTAACAAA
TATATGTAAAATATCTTTAGAGGGAGAAAGCGAAATAATAAACTTCTTTC
TTATTTTTGTCTCAGACTACTCATAACAGAAAACTTCCTTTCATGAAAAC
CAAATTTCATAACTGGAAAATAATCTACAATATATATGTAAGCCCCCCTT
TAAACTATCCCCCCTTCCTTGCTATCCCCCCTTTTCATGAAAATTTCTGA
CCCCCCTTCTTCATTTTTTCGGAAGGTGTCATCCCCCCTTAAGAAAGTGG
GGTCCGAACAATGGGCTAAAGAAGTCACATGCTATTTTTAGAAAGGCATC
GCAGTGTCCGTTGGTGGCCAAAAAGGGCATTTTTTCTTGTGTTTTTCCAC
TAAAAAGGCTTTTTTGACCAAAGTTTTAGTGATTTTAGGAGAAGCGCCTA
ATAGCTGGATACTAAAAGGGCTGAAAAAAGCTTGAAAAATGGCCTGAGTC
ATGCAAATTGTTTGTTGACTTCAAACCAAATGTTTCATTTTTCCATGAAC
TTTGAACGCTTCTGATTTTTATTATTCTACTGTGTTACTCTGGTTAGCCT
GCAATCTTGGCTTTCCAGCAACACTGAGACTTGGGCTAGACGGCAAATTA
GTAAATGCTGAACGTTTATTTAAAATTTATTGATAATTGAACTTCTGTAA
AAACCAGGAAGAATAAAATTGGCAGCCAAACAATGGAGTATATACATGAA
AAAGTTCACCATCAATGTTCTTTATGTTCTGAAATACATAATGTAAATTG
GCCTAATAGACCTTTTGTAGGACACAATGTCATGTTGAATATAATTAAAA
ACTCCACTGACTCCAGCATCAAAACAACGATAAGAAAATATTAAGTACAT
GCATTTACTAATCATGCTCTCGATTGTTTTTTTTCAGCTTGAATTTAAAT
AAAAAGTTTGGGTTTTAGGGTCAAGGTGAAGTGCTTCAACAAGTCTGATT
TTTTTTGTCATAGATTTGTTGCGAAAGATGAAATCTCTGGAACAAGTCAG
TTGAAGTCATCAGTACAACGTGGCATCAGAACAAAACTTCAAGAACACTA
CCCAAACATACAACCTTATATTGATGAAATCCTCCCAAAAAAAGAAAGCA
TTGTCCTTGTTAAATGGTATGCAATTAGAAATTGATCAAAAAGTTTTTTC
CTGAAAGATTTTTATCTAACTCTGATAAACCTGAATTTGAGGCAAAATTC
AGAAAAGATCTTTTTTGTTGGACCTACCCCGGTGGAGGTCCTATAAATTA
ACCGTTGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCTTGAGCTTTT
CTCGAGATTGGCTCATTCATTATTTATGATTTTTTGCACAAAGGTGCTTA
ACTATAAACCCTCGAATGTGACAAAGCCCAATTTTGGGAGAAAAAAATTC
GGGGGCAAATTCCAGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGGACTT
TGTTGAAAACTGGATCATTAATCTTTCCTGATTTTTTGCATGAAAGTAGG
GTATTACCATCGGTAAAAGATGGTTGAAGCAGATTTTCACTAAAACATTT
TCTCGCCTCAATAATTGAATCTATATTCATAAAAATCACTATTTATAAGC
ATGCATCAATGTTCTTAGCCAAATTTTTCAATTTTTAGATGAGATAGATA
TTCTTTTCCTTCCAATTCCCTTCCTTAATACAACCCCAATGGGCACGGGG
TACAATTAATGATGAAAACAAACGACAAATTTTAATAAATCGTCACTATT
TGTGTTCCGAATGATTGTTTTAACGATATGTGTTAAACCTTTAAGTGCTG
ATCTTTTTTTTTCACAACTCGACCTATTTGGTTAAAGGGTTGAATGCATA
ATCAGGTAGGTCCATAAAACCGTCTGTTACCAGCTTTTCTCAGGATTGGC
TCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATCGCAATGCCC
AGAACGTGACGGAGCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAAGAAAATATAGCTTTTCTCAATGTTGACTCGTTATTTTTTTCTGATTT
TTTGCACAACGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCCGAT
TTTTGAGAAAAAATATATATTTTGGCAAATTTGGGCCAAAAACTGCCTAA
AAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATAACTTTTTTCTG
ATTTTTTGTACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTCCCTTAAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCGT
TATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATTCCCAAAA
TGTGAAGGAGCCAGATTTTTAAGGAAAATCTTTTTGGGCAAATTTGGGCC
AAAAACAACTTAAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCG
TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT
TTATTTTTCCATTCTGAATTTCTGAATTTTTGTACAATTATTGTCACTTT
TTTCTTATTTTCATCTGATGTTTATCATTAGGTAGGTCCATTCAGCATGT
TGCTTGTTTTATATTATTTTTGTTTATCTTTTTATTCAATGTCATTTATC
CTTTTTTCTCCAATGTCAGTCTTACTATAGTCTAGCAAGCTAGACGACTA
ATTCAGACATATTAGAAATAAAGCAAAAAAGTAAATTTTAGTCGTCTAGA
AACCTTTTGTGCACTAACTCCAAACAAAAAAAAAGTGTCAATATCGCAAT
TAAAATTTTTTCCCGCTCAAAAAAAGTTCTTGAAAATAAAATGTGTGTGG
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCATTT
GAGTTGATTTTATTTTGAGAGTTTGTTGTTGCTTGATAAATTGTTTTTTC
GCTACGCAAGTTTCTGCGTAGCTAGGCCCGGTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGTCTTACTATGCTTACATGCTTTATGC
CTGTAAAATTTGTTTAAATATGAAAAGAAATCTCTAGGTGCATTTTTCAA
GAGACAAAATTCTCGGCGGGACAAACTTCCTAGAAACATTATTATCAACA
CCCCTTGGCCTTGGATATCGGCTACCTACCGACAGCCAAGAAAAACAAAG
GCTGAGTTATCGGTCAATTACTTTAATTGGATAAACTTTCGCGGGATTAA
ATTTCGCGGATTTCGCGAATTTGTTTGTCAAATAAATACTATTTGAATGG
TCACTTGCATCAAAGAGGCGCAAATGTGTACTTCAACAACCAGCATGTAT
GATCACAAAATCGTGAAAATATTGCTACCCAATAGTGCCACCCGCAAAAT
TAAGTCCCCGCAAAAGTTTTGATTTTCGCCGATAGGCCCAACCGCGAAAT
TTAATCCCCGCGAAAGTTTATCCCATCTCAAAAAGACTTACAAGGAGTTT
TAAAAATTCACTCTTCCTTTTGTTTTTAGTAAAGAACACATCGAAATATT
AGCAGTAAAATCACAGCTGGTGTTTTTCAGACAGCGTGATGGTCCTTGGA
TACCAACTTTAAGACTTCTTCATAAATGTATGTGAGTGTTTTCTTTTTGG
ATGTATCCAACAATTTCACTTTTGTTATAAATCAAAATGCCACTTTTCTC
ATGTCTTTTGTCTCCTTGTCAAGGCTTTGGTATCAAATTTTTTTTTTAGC
AAACCACACGACTGCAAGTACCTCAAAGGGTGTTTTAATGTTTCATCACG
AATAAATTTATCTCTTTATCTCCGTTATTATTCTTTTTTTAGATCCATTC
TTACTAACACATGAACAAGTGGATAAAGGGGCAATCCGCTTCATATTGAG
TGGAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTGCGAAAATGA
CACCAGTTGAAAAAGACACAGTAGTTGTATCCTTTCATCATTCCACATAA
AATTAGTTTCTGACATTGAAATTTTCAATAGTGTCTTGAAGTTAGTCAAA
GTTTAGCCATACGAATTTGAAGTCGGTGGGGCAATTAGAGCGCTCTACAT
CAAAATTTGAAAGTTATGGAAACTTTTTTTGGACCACCCGGTTTATTTCT
TGTTTTGAACATTTTATGAAGAATTTTTGCTTTACTTTTTACACTCTTAA
AATTGTTTTAAAACATCTATGTTACAAGCACTTTATGAATTTCCTTAACT
TTCGTTCATTAAAACTGAAGGCCATAATGGCAGAGGGAAAAAAACACGCT
GTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAAATGTAAGAATCTTT
TTGACGCATTGTATCAGTTCAGCTCTAGACAGGAAACCCGTCCTGTATTT
TCATATACAGGACGGGTACGAGTTGTGAGGCAGATTTCTGCCTCGAAAAA
CTTTACAGTTGGAAATTCGAACTTAGCGCCGTCCTCACTTACTAAAATAA
AAACCAAATTTCAGAACTTGCGATTTCTCTAAGAAAGTGTGACCAGTAAA
AGAATAACAAAATTTGATTGGCTATGTTTTCAACCGTCATTAGGATCTGG
GAAATTCAAACTCAGTCCAAACCATGCTATATATTTTGCCATCAGTATAT
AAAATAAGCAATCATAGCATTGATCTCCAGGCTAGTTCAGTGGATTAGTT
TTTTCGGTTCTTCGAAGGAAAAACGCGCTATCTGTTGATATTTATCAGTT
TTATTTCTTTTTACAGAGCGGAAAAGAATAAAGGCATAGGGGTGGATAAC
GTCCATTATCTTAATGATGGATTATGGGTAATGAAAAACCTGGACAAATA
GAAGAAGTATCAAATTTCGTTTTATTTATTTTTCAAACAATAATTTTTTT
GTACATTTTTATTTGAAATTTACAAATACTTACAAAAAACCTAACCGAAT

Coding sequence (CDS) from alignment at sc0000041:107936..118535-

>TCONS_00004265 ID=TCONS_00004265|Name=TCONS_00004265|organism=Clytia hemisphaerica|type=CDS|length=4122bp|location=Sequence derived from alignment at sc0000041:107936..118535- (Clytia hemisphaerica)
AGCGGAAAAGAATAAAGGCATAGGGGTGGATAACGTCCATTATCTTAATG
ATGGATTATGGGTAATGAAAAACCTGGACAAATAGGCCATAATGGCAGAG
GGAAAAAAACACGCTGTCTGCATTGGCTCGACCAAAATGAGCACGCAAGA
AATATCCATTCTTACTAACACATGAACAAGTGGATAAAGGGGCAATCCGC
TTCATATTGAGTGGAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGG
TGCGAAAATGACACCAGTTGAAAAAGACACAGTAGTTTAAAGAACACATC
GAAATATTAGCAGTAAAATCACAGCTGGTGTTTTTCAGACAGCGTGATGG
TCCTTGGATACCAACTTTAAGACTTCTTCATAAATATTTGTTGCGAAAGA
TGAAATCTCTGGAACAAGTCAGTTGAAGTCATCAGTACAACGTGGCATCA
GAACAAAACTTCAAGAACACTACCCAAACATACAACCTTATATTGATGAA
ATCCTCCCAAAAAAAGAAAGCATTGTCCTTGTTAAATGCTATGCTCTAAA
GTCAGAATCCCGATTATTGAAGCCATACATCAGCACTACCCACGAGTTTC
AGGTGAAGATTTTTATTTTTCTTGTTCGAAGATTCCCACACCATTTTTCT
TATCAAATTTATCACGGCAGTGGACCATGTTTAAGAAAGCGGAAAAGAAT
AAAGGCATAGGGGTGGATAACGTCCATTATCTTAATGATGGATTATGGGT
AATGAAAAACCTGGACAAATAGGCCATAATGGCAGAGGGAAAAAAACACG
CTGTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAAATATCCATTCTT
ACTAACACATGAACAAGTGGATAAAGGGGCAATCCGCTTCATATTGAGTG
GAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTGCGAAAATGACA
CCAGTTGAAAAAGACACAGTAGTTTAAAGAACACATCGAAATATTAGCAG
TAAAATCACAGCTGGTGTTTTTCAGACAGCGTGATGGTCCTTGGATACCA
ACTTTAAGACTTCTTCATAAATATTTGTTGCGAAAGATGAAATCTCTGGA
ACAAGTCAGTTGAAGTCATCAGTACAACGTGGCATCAGAACAAAACTTCA
AGAACACTACCCAAACATACAACCTTATATTGATGAAATCCTCCCAAAAA
AAGAAAGCATTGTCCTTGTTAAATGCTATGCTCTAAAGTCAGAATCCCGA
TTATTGAAGCCATACATCAGCACTACCCACGAGTTTCAGGTGAAGATTTT
TATTTTTCTTGTTCGAAGATTCCCACACCATTTTTCTTATCAAATTTATC
ACGGCAGTGGACCATGTTTAAGAAAGCGGAAAAGAATAAAGGCATAGGGG
TGGATAACGTCCATTATCTTAATGATGGATTATGGGTAATGAAAAACCTG
GACAAATAGGCCATAATGGCAGAGGGAAAAAAACACGCTGTCTGCATTGG
CTCGACCAAAATGAGCACGCAAGAAATATCCATTCTTACTAACACATGAA
CAAGTGGATAAAGGGGCAATCCGCTTCATATTGAGTGGAGCAAATATTAT
GTGTCCGGGCTTGACGTCACCTGGTGCGAAAATGACACCAGTTGAAAAAG
ACACAGTAGTTTAAAGAACACATCGAAATATTAGCAGTAAAATCACAGCT
GGTGTTTTTCAGACAGCGTGATGGTCCTTGGATACCAACTTTAAGACTTC
TTCATAAATATTTGTTGCGAAAGATGAAATCTCTGGAACAAGTCAGTTGA
AGTCATCAGTACAACGTGGCATCAGAACAAAACTTCAAGAACACTACCCA
AACATACAACCTTATATTGATGAAATCCTCCCAAAAAAAGAAAGCATTGT
CCTTGTTAAATGCTATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCAT
ACATCAGCACTACCCACGAGTTTCAGGTGAAGATTTTTATTTTTCTTGTT
CGAAGATTCCCACACCATTTTTCTTATCAAATTTATCACGGCAGTGGACC
ATGTTTAAGAAAGCGGAAAAGAATAAAGGCATAGGGGTGGATAACGTCCA
TTATCTTAATGATGGATTATGGGTAATGAAAAACCTGGACAAATAGGCCA
TAATGGCAGAGGGAAAAAAACACGCTGTCTGCATTGGCTCGACCAAAATG
AGCACGCAAGAAATATCCATTCTTACTAACACATGAACAAGTGGATAAAG
GGGCAATCCGCTTCATATTGAGTGGAGCAAATATTATGTGTCCGGGCTTG
ACGTCACCTGGTGCGAAAATGACACCAGTTGAAAAAGACACAGTAGTTTA
AAGAACACATCGAAATATTAGCAGTAAAATCACAGCTGGTGTTTTTCAGA
CAGCGTGATGGTCCTTGGATACCAACTTTAAGACTTCTTCATAAATATTT
GTTGCGAAAGATGAAATCTCTGGAACAAGTCAGTTGAAGTCATCAGTACA
ACGTGGCATCAGAACAAAACTTCAAGAACACTACCCAAACATACAACCTT
ATATTGATGAAATCCTCCCAAAAAAAGAAAGCATTGTCCTTGTTAAATGC
TATGCTCTAAAGTCAGAATCCCGATTATTGAAGCCATACATCAGCACTAC
CCACGAGTTTCAGGTGAAGATTTTTATTTTTCTTGTTCGAAGATTCCCAC
ACCATTTTTCTTATCAAATTTATCACGGCAGTGGACCATGTTTAAGAAAG
CGGAAAAGAATAAAGGCATAGGGGTGGATAACGTCCATTATCTTAATGAT
GGATTATGGGTAATGAAAAACCTGGACAAATAGGCCATAATGGCAGAGGG
AAAAAAACACGCTGTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAAA
TATCCATTCTTACTAACACATGAACAAGTGGATAAAGGGGCAATCCGCTT
CATATTGAGTGGAGCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTG
CGAAAATGACACCAGTTGAAAAAGACACAGTAGTTTAAAGAACACATCGA
AATATTAGCAGTAAAATCACAGCTGGTGTTTTTCAGACAGCGTGATGGTC
CTTGGATACCAACTTTAAGACTTCTTCATAAATATTTGTTGCGAAAGATG
AAATCTCTGGAACAAGTCAGTTGAAGTCATCAGTACAACGTGGCATCAGA
ACAAAACTTCAAGAACACTACCCAAACATACAACCTTATATTGATGAAAT
CCTCCCAAAAAAAGAAAGCATTGTCCTTGTTAAATGCTATGCTCTAAAGT
CAGAATCCCGATTATTGAAGCCATACATCAGCACTACCCACGAGTTTCAG
GTGAAGATTTTTATTTTTCTTGTTCGAAGATTCCCACACCATTTTTCTTA
TCAAATTTATCACGGCAGTGGACCATGTTTAAGAAAGCGGAAAAGAATAA
AGGCATAGGGGTGGATAACGTCCATTATCTTAATGATGGATTATGGGTAA
TGAAAAACCTGGACAAATAGGCCATAATGGCAGAGGGAAAAAAACACGCT
GTCTGCATTGGCTCGACCAAAATGAGCACGCAAGAAATATCCATTCTTAC
TAACACATGAACAAGTGGATAAAGGGGCAATCCGCTTCATATTGAGTGGA
GCAAATATTATGTGTCCGGGCTTGACGTCACCTGGTGCGAAAATGACACC
AGTTGAAAAAGACACAGTAGTTTAAAGAACACATCGAAATATTAGCAGTA
AAATCACAGCTGGTGTTTTTCAGACAGCGTGATGGTCCTTGGATACCAAC
TTTAAGACTTCTTCATAAATATTTGTTGCGAAAGATGAAATCTCTGGAAC
AAGTCAGTTGAAGTCATCAGTACAACGTGGCATCAGAACAAAACTTCAAG
AACACTACCCAAACATACAACCTTATATTGATGAAATCCTCCCAAAAAAA
GAAAGCATTGTCCTTGTTAAATGCTATGCTCTAAAGTCAGAATCCCGATT
ATTGAAGCCATACATCAGCACTACCCACGAGTTTCAGGTGAAGATTTTTA
TTTTTCTTGTTCGAAGATTCCCACACCATTTTTCTTATCAAATTTATCAC
GGCAGTGGACCATGTTTAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002369XLOC_002369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004265-proteinTCONS_00004265-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004265-exon-sc0000041-1575043694:118387..118535TCONS_00004265-exon-sc0000041-1575043694:118387..118535Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1575043694:112520..112672TCONS_00004265-exon-sc0000041-1575043694:112520..112672Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1575043694:109259..109356TCONS_00004265-exon-sc0000041-1575043694:109259..109356Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1575043694:108910..109043TCONS_00004265-exon-sc0000041-1575043694:108910..109043Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1575043694:108548..108615TCONS_00004265-exon-sc0000041-1575043694:108548..108615Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1575043694:107936..108119TCONS_00004265-exon-sc0000041-1575043694:107936..108119Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:118387..118535TCONS_00004265-exon-sc0000041-1510915933:118387..118535Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:112520..112672TCONS_00004265-exon-sc0000041-1510915933:112520..112672Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:109259..109356TCONS_00004265-exon-sc0000041-1510915933:109259..109356Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:108910..109043TCONS_00004265-exon-sc0000041-1510915933:108910..109043Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:108548..108615TCONS_00004265-exon-sc0000041-1510915933:108548..108615Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1510915933:107936..108119TCONS_00004265-exon-sc0000041-1510915933:107936..108119Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:118387..118535TCONS_00004265-exon-sc0000041-1491911889:118387..118535Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:112520..112672TCONS_00004265-exon-sc0000041-1491911889:112520..112672Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:109259..109356TCONS_00004265-exon-sc0000041-1491911889:109259..109356Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:108910..109043TCONS_00004265-exon-sc0000041-1491911889:108910..109043Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:108548..108615TCONS_00004265-exon-sc0000041-1491911889:108548..108615Clytia hemisphaericaexon
TCONS_00004265-exon-sc0000041-1491911889:107936..108119TCONS_00004265-exon-sc0000041-1491911889:107936..108119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:107936..118535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
230.594	229.317	119.952	103.033	79.9272	72.652	77.2725	86.9104	90.9217	78.9328	78.6091	69.2931	55.2211	61.2243	55.5522	54.3361	79.0212	65.7204	30.7703	37.2633	57.6213	54.4975	136.392	109.347	61.4931	67.723	68.5355	48.2503	62.6507	71.3498
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR016437MCT-1/Tma20
IPR004521Uncharacterised_CHP00451
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00004265 vs. Swiss-Prot (Human)
Match: MCTS1 (Malignant T-cell-amplified sequence 1 OS=Homo sapiens GN=MCTS1 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 5.450e-85
Identity = 113/178 (63.48%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:  139 MFKKFVAKDEISGTSQLKSSVQRGIRTKLQEHYPNIQPYIDEILPKKESIVLVKCKEHIEILAVKSQLVFFRQRDGPWIPTLRLLHKYPFLLTHEQVDKGAIRFILSGANIMCPGLTSPGAKMTPVEKDTVVAIMAEGKKHAVCIGSTKMSTQEIAEKNKGIGVDNVHYLNDGLWVMK 672
            MFKKF  K+ +S   QLK+SV +GI+ +L E +P I+P++++I+PKK+ + +V+C EHIEIL V  +L+FFRQR+GP+ PTLRLLHKYPF+L H+QVDKGAI+F+LSGANIMCPGLTSPGAK+ P   DT+VAIMAEGK+HA+C+G  KMS ++I + NKGIG++N+HYLNDGLW MK
Sbjct:    1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178
The following BLAST results are available for this feature:
BLAST of TCONS_00004265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCTS15.450e-8563.48Malignant T-cell-amplified sequence 1 OS=Homo sapi... [more]
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