TCONS_00004265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004265-protein
Unique NameTCONS_00004265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004265-protein ID=TCONS_00004265-protein|Name=TCONS_00004265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
LCSKVRIPIIEAIHQHYPRVSGEDFYFSCSKIPTPFFLSNLSRQWTMFKK
FVAKDEISGTSQLKSSVQRGIRTKLQEHYPNIQPYIDEILPKKESIVLVK
CKEHIEILAVKSQLVFFRQRDGPWIPTLRLLHKYPFLLTHEQVDKGAIRF
ILSGANIMCPGLTSPGAKMTPVEKDTVVAIMAEGKKHAVCIGSTKMSTQE
IAEKNKGIGVDNVHYLNDGLWVMKNLDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002369XLOC_002369Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004265TCONS_00004265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR016437MCT-1/Tma20
IPR004521Uncharacterised_CHP00451
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 139..217
e-value: 7.7E-12
score: 55.3
IPR002478PUA domainPFAMPF01472PUAcoord: 142..216
e-value: 5.9E-18
score: 64.5
IPR002478PUA domainGENE3D2.30.130.10coord: 140..217
e-value: 4.7E-26
score: 90.2
IPR002478PUA domainPROSITEPS50890PUAcoord: 138..217
score: 14.154
IPR016437MCT-1/Tma20PIRSFPIRSF005067Tma_RNA-bindcoord: 33..228
e-value: 1.3E-60
score: 202.6
IPR004521Uncharacterised domain CHP00451TIGRFAMTIGR00451TIGR00451coord: 115..218
e-value: 6.2E-23
score: 79.1
NoneNo IPR availableCDDcd11609MCT1_Ncoord: 50..126
e-value: 5.25474E-42
score: 138.051
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 142..223

Blast
[Close]
BLAST of TCONS_00004265-protein vs. Swiss-Prot (Human)
Match: MCTS1 (Malignant T-cell-amplified sequence 1 OS=Homo sapiens GN=MCTS1 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 4.354e-87
Identity = 113/178 (63.48%), Postives = 149/178 (83.71%), Query Frame = 0 
Query:   47 MFKKFVAKDEISGTSQLKSSVQRGIRTKLQEHYPNIQPYIDEILPKKESIVLVKCKEHIEILAVKSQLVFFRQRDGPWIPTLRLLHKYPFLLTHEQVDKGAIRFILSGANIMCPGLTSPGAKMTPVEKDTVVAIMAEGKKHAVCIGSTKMSTQEIAEKNKGIGVDNVHYLNDGLWVMK 224
            MFKKF  K+ +S   QLK+SV +GI+ +L E +P I+P++++I+PKK+ + +V+C EHIEIL V  +L+FFRQR+GP+ PTLRLLHKYPF+L H+QVDKGAI+F+LSGANIMCPGLTSPGAK+ P   DT+VAIMAEGK+HA+C+G  KMS ++I + NKGIG++N+HYLNDGLW MK
Sbjct:    1 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178
The following BLAST results are available for this feature:
BLAST of TCONS_00004265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCTS14.354e-8763.48Malignant T-cell-amplified sequence 1 OS=Homo sapi... [more]
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