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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004121 ID=TCONS_00004121|Name=TCONS_00004121|organism=Clytia hemisphaerica|type=transcript|length=1261bp atcgattgtggtttcaaaatttcccgggggatttcccttttttctcaaat attacgaccatgattgcagataaaatccgttcatggggggtggaggatga attgtccaggggtattgaaaaaataccaaaaaattgcaatgtccagaNAC ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC CTCTATTCTGAAAAAGAGGTCTTCATTCGAGAGATTGTGTCGAATTCATC GGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTCAACAAATTT CTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGATGAAGAAAAG GGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAAAGATGAGCT TATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAGCTTTTATTG AGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATTGGACAATTC GGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGATTGATGTTTT TACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGTCATCCGATG GATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACA AAAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAAC TACTGTCGAAGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCA TTTACTTAAATGGCTCAAGACTCAACAACATTGATGCTTTATGGACGAGC TCAGAGAGGGATGTCAGCGAAACAGACCATTCCCAATTCTATCAGTTTAT TTCCAATACGTCAGACGAACCTCGCTATTCGCTCATGTACAAAGCGGACG CCCCATTGAACATTCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAA ATGTTCGGTTTCGGGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAA GATTTTGATTCAATCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTT TCATTCGTGGTGTTGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGA GAACTCCTTCAAGATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGT TACTAAACTACTAAGGTACTTCTTAGAACAATCGcgaaaagatgaagaaa aattCACGAAATTTATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTG GTCACTGACCA Run BLAST on NCBI transcript from alignment at sc0000039:394937..398234- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004121 ID=TCONS_00004121|Name=TCONS_00004121|organism=Clytia hemisphaerica|type=transcript|length=3298bp|location=Sequence derived from alignment at sc0000039:394937..398234- (Clytia hemisphaerica) ATCGATTGTGGTTTCAAAATTTCCCGGGGGATTTCCCTTTTTTCTCAAAT
ATTACGACCATGATTGCAGATAAAATCCGTTCATGGGGGGTGGAGGATGA
ATTGTCCAGGGGTATTGAAAAAATACCAAAAAATTGCAATGTCCAGANAC
ATGAATTCCAAGCAGAAACCAGGCAACTTTTGGACATCGTTGCAAGATCC
CTCTATTCTGAAAAAGAGGTTAGCTACGATATTAACTTTTATCAGATATT
TATTAGTCGGCCTAAAGTTACGAAACAACAAGAAAAGCTATTTAAGGTTT
TCCTTCAGACCGCAATTATTGCTCAAAACTTTAAAGTGTCATAAAAGCTT
GTAGCTTTTGATTTAGAAGATGGCTTTGGTACCATTGGTAGGCTATTTTC
ATACTCTGCGTCCCTCGTGGTCTAAGGGTTGAATTCTTTTGAAGGGAAAA
AATTCACTTATGATAATTGTCATTTAGGTCTTCATTCGAGAGATTGTGTC
GAATTCATCGGATGCTCTCGAGAAGCTGCGGCAAGTTCAAGTTACTGGTC
AACAAATTTCTGATTCTGATTCTCCCCTTGAAATCCATCTGACCACTGAT
GAAGAAAAGGGCCTGTTCATTATCCAAGATTTTGGTATCGGCATGAGCAA
AGATGAGCTTATCAATAACCTTGGTACGATCGCTCGATCAGGCTCAAAAG
CTTTTATTGAGAAAGCTAAGCACGAGAGCATTGACGCTCAAAACATCATT
GGACAATTCGGTGTGGGATTTTATTCCACCTTTATGGTTGGTGATAAGAT
TGATGTTTTTACCAAATCTTATGAGCCAAGTGCTTCTGGATATCATTGGT
CATCCGATGGGTAAGTAGAAAAAAAAGGCTTCACAAAATAATAACCAAAT
CTGTTATGTCGAATTCATTTTTTTTTCCTCGATTTAATCCTATTAATTTA
GTTGTAAGGTTGCCAGTCACTTTTAACTTTGTGATTTTCTCAAGCTTGTA
TCGGAGCAATAATCTCTTTCCCACCTTTGCGAGTTTGTCACGTATTTTGT
AGTTTGAAAGATAAATGAAATGTTTCAAAAATTATATTATCATGTTTGTG
TAATGCAATTGACGTAACATGTCTTAAAATACTATTCAATCGAAGTTTTT
TTGTTTACCGTTGCATAACAGCCTGTTCAAACGTTCAGTGAAGGGGTCAG
TCGTTCATATACTGAAACCGCTAAGGAAAAAAATTTACCTTAAGCGAGAA
TTTTATCACATCAATATGTCGGACGGCTATTTCATTTTGAAAAATTTGAA
GATTGGGTTCTCATAAAACTACTTTAAACTTTAAAGTGGCTCTTTAGGGT
TAGACCATGTTCACACACGACGGTTCCGTTTCGCTCCGAAACGAAATGAA
GCCATTCTATTGGTTAGAAGTGACGTAAAACTTGAATGGGATAATTGAAA
CAAATCTGAGCGATCTCCATCCATTTACGAAAGCTTTCTCCTATTAACAG
ATCTGGCTCATACGAGATCGCCGAAGCTGAAGGCGTAACACGTGGTACAA
AAGTCATCATCCATTTGAAATCTGATGATCGAAGGTTCTCCCTCAAAACT
ACTGTCGAAGGTGAGAATTTACAAAACTGTTCACTCATCATGGTGCTTGT
TCTTCTCTAGATGAAGAATCTAAAATGGAAGGTGCTGTGAAAATACGATG
CCATTACAAAAACAGTAATATCCTTTGTATATGTTCAATTTTATGGCTTT
TTTTAAAACAAGTACCTGAAAGAATGGTCCAGGCAACTATCTGTTTTTGA
ACGTTTTGAAGCTTGGAATAGACTTCGGAAATAACTTACCTGTATATTTT
AGATATCATTCGGCGCTACAGTAACTTTGTCGGATTTCCCATTTACTTAA
ATGGCTCAAGACTCAACAACATTGATGTAAGTGTATCTGAATGGGTTGGC
AAACGATATCATCCACCAGGATGCATCCTCTCTTATTTTCCCCCTATTTT
CTACTTTCCTATCTTCTATCCTGATTTTCTGACTTTCTCTAGTGTTTCTA
ACTGTTTTCTAAGTATTTTTCTGAAATTTGACCGTACCGGTGTGGTCTCC
GACCCCGGCTCGAACCACCAAATGCGAGTAACCTTGGTTTACAAACCCAA
CGCTCAACCGCTTGAGCCAACGAGACACGGCAGAAAGTTGTCACTCACAA
ATACTTATAGCGTGTAATTTACAGACCTTTATTAAGAAAGCTCCCAACCC
TACCGGTGCCCCTACAAGGATCCCTACGGGATCCTAAGTTAGGTCACAGG
GTACGGATGCCCCTAAGAAGGCCTTCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGCTCCA
ACCCTAACCCTAACTGATAATAACCGAACCCCCGTCTAGGTCCGCAGATT
GAAAAATTTCACTTGCATCCTGGTGGATGATATCGTCTGCCAACCATCTG
AATGGGCGTGTATTCCTTAAATTTTCTAATAGTTTCAACGTTATTTGATG
CCTTAGATACCTGTATCTAAAGGATTGTTTATAAAGAATTAAACGAGGTT
GGCATGAATTACCCCCTTACTCCACACATGTTTAAATAAAGAACCTTTTG
ATAAATGGCTCATAAGATTATGTACATCCCTCATCCCTTGACCCTGACCT
TGGTAGATACTTCATACGGACACTCGTTCGTTTACGTTCTTGCAATATTT
GCTGAAATGGTTTTGAGAACTTCACAGACAATTATCAATACGAATGTAAA
AACTTGACTTGAATAATTATAGGCTTTATGGACGAGCTCAGAGAGGGATG
TCAGCGAAACAGACCATTCCCAATTCTATCAGTTTATTTCCAATACGTCA
GACGAACCTCGCTATTCGCTCATGTACAAAGCGGACGCCCCATTGAACAT
TCGTAGTGTTTTATACGTACCTTCCAATATCCCAGAAATGTTCGGTTTCG
GGCGTATGGAGCTCGGTGTTAGTTTGTATTCACGGAAGATTTTGATTCAA
TCGAAAGCGCAAAAGATTTTACCGGAATGGTTACGTTTCATTCGTGGTGT
TGTTGATAGTGAAGACATCCCATTGAACTTGAGTAGAGAACTCCTTCAAG
ATAGTGCTTTGATTCAAAAACTGAGTGATGTTCTTGTTACTAAACTACTA
AGGTACTTCTTAGAACAATCGCGAAAAGATGAAGAAAAATTCACGAAATT
TATGAAAGAGTGTGGAAATTATTTCCGGGAGGGTGTGGTCACTGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004121-exon-sc0000039-1575043694:398017..398234 | TCONS_00004121-exon-sc0000039-1575043694:398017..398234 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1575043694:397375..397757 | TCONS_00004121-exon-sc0000039-1575043694:397375..397757 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1575043694:396625..396734 | TCONS_00004121-exon-sc0000039-1575043694:396625..396734 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1575043694:396309..396382 | TCONS_00004121-exon-sc0000039-1575043694:396309..396382 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1575043694:394937..395412 | TCONS_00004121-exon-sc0000039-1575043694:394937..395412 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1510915933:398017..398234 | TCONS_00004121-exon-sc0000039-1510915933:398017..398234 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1510915933:397375..397757 | TCONS_00004121-exon-sc0000039-1510915933:397375..397757 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1510915933:396625..396734 | TCONS_00004121-exon-sc0000039-1510915933:396625..396734 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1510915933:396309..396382 | TCONS_00004121-exon-sc0000039-1510915933:396309..396382 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1510915933:394937..395412 | TCONS_00004121-exon-sc0000039-1510915933:394937..395412 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1491911889:398017..398234 | TCONS_00004121-exon-sc0000039-1491911889:398017..398234 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1491911889:397375..397757 | TCONS_00004121-exon-sc0000039-1491911889:397375..397757 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1491911889:396625..396734 | TCONS_00004121-exon-sc0000039-1491911889:396625..396734 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1491911889:396309..396382 | TCONS_00004121-exon-sc0000039-1491911889:396309..396382 | Clytia hemisphaerica | exon |
TCONS_00004121-exon-sc0000039-1491911889:394937..395412 | TCONS_00004121-exon-sc0000039-1491911889:394937..395412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000039 | supercontig | sc0000039:394937..398234 - |
Blast
BLAST of TCONS_00004121 vs. Swiss-Prot (Human)
Match: TRAP1 (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3) HSP 1 Score: 471.47 bits (1212), Expect = 6.661e-160 Identity = 225/372 (60.48%), Postives = 292/372 (78.49%), Query Frame = 3
Query: 150 HEFQAETRQLLDIVARSLYSEKEVFIREIVSNSSDALEKLRQVQVT-GQQISDSDSPLEIHLTTDEEKGLFIIQDFGIGMSKDELINNLGTIARSGSKAFIEKAKHESIDAQNIIGQFGVGFYSTFMVGDKIDVFTKSYEPSASGYHWSSDGSGSYEIAEAEGVTRGTKVIIHLKSDDRRFSLKTTVEDIIRRYSNFVGFPIYLNGSRLNNIDALWTSSERDVSETDHSQFYQFISNTSDEPRYSLMYKADAPLNIRSVLYVPSNIPEMFGFGRMELG--VSLYSRKILIQSKAQKILPEWLRFIRGVVDSEDIPLNLSRELLQDSALIQKLSDVLVTKLLRYFLEQSRKDEEKFTKFMKECGNYFREGVVT 1256
HEFQAET++LLDIVARSLYSEKEVFIRE++SN+SDALEKLR V+ GQ + + +EIHL T+ EKG IQD GIGM+++EL++NLGTIARSGSKAF++ ++++ + IIGQFGVGFYS FMV D+++V+++S P + GY W SDGSG +EIAEA GV GTK+IIHLKSD + FS + V D++ +YSNFV FP+YLNG R+N + A+W +DV E H +FY++++ D+PRY+L YK DAPLNIRS+ YVP P MF R ELG V+LYSRK+LIQ+KA ILP+WLRFIRGVVDSEDIPLNLSRELLQ+SALI+KL DVL +L+++F++QS+KD EK+ KF ++ G + REG+VT
Sbjct: 88 HEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPE----MEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKPSMFDVSR-ELGSSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPLNLSRELLQESALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVT 454
The following BLAST results are available for this feature:
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