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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004101 ID=TCONS_00004101|Name=TCONS_00004101|organism=Clytia hemisphaerica|type=transcript|length=1197bp
TATGAAGGGGCCCATTGAAGTTGATGAAGATTctgaattttagaaaaaca
atcaaatttgtaaaatgcgttcttaatcttttgaaaTATCAATTCATTTG
GAATTTGTTTCTACCGCGAAAGTATATCAAAGAATGACAATCAAAGTGGA
CGCACAACAACAGACCAAAATGAGACTTTCTTCGTCACCGCTTCCAAGCA
TCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGAAAAATATTGCGGA
AAGACAGCGTTGACAGTTCGATATTTAACGGGGAAGTTCATTTACGATTA
TGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCAAACTTGAACAACG
GAGATGTCCAAATTAATATTGTCGATACTTCACAAAATaCAGTGACCAGC
GCGATTGTGGATGCAGATGGAGTGATCATTGTGTATGCTATCAACAGTAA
ATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATGTTGTTGCTGTCA
GTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATCGGACATGTGGCAT
TATCGGACAGTTATGAGATCAGATGGTGAATATCTAGCTAAACAATACGG
ATGTAAATATTTCGAACTTTCCGCGTTGACGGATTATGAGAAGGTTCAGC
GCATGTTTAATGTCATGTTAAAATTGATGAATGATCGACATACGGATAAA
GAACTTATTGAGAGTAAATCTGCTATTGTGATTAATGACAGTTCACCGCC
CCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGATCTCTGCATTTac
ctaaagaaaataaagctgtTAAAGTTGGACAAAGTAAAAGCCCGATATTA
TTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTCTCAGTCGATCTAA
ATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGGAAGAGAATCTATT
CAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGGGCTGATTGAATTA
TGTGATTGTCAACACGGcttgaaaattttcagagtttAGAATCCGAAGAA
AGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGCTAATAAATTGACt
ctcaattttcatttttctgtgttttcaccagaaggtttttctttttttgc
aaatggAAGCTGATGTTTTAAGAATCTATAATAACTCTGGTAAACAT Run BLAST on NCBI protein sequence of TCONS_00004101-protein >TCONS_00004101-protein ID=TCONS_00004101-protein|Name=TCONS_00004101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MTIKVDAQQQTKMRLSSSPLPSINKKTFKIVVLGEKYCGKTALTVRYLTG
KFIYDYATGEDFIYPHQANLNNGDVQINIVDTSQNTVTSAIVDADGVIIV
YAINSKSSFHRAEELLKHVVAVSCKPSIAIAANKSDMWHYRTVMRSDGEY
LAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVI
NDSSPPPIEDFEGRRRARSLHLPKENKAVKVGQSKSPILFRKLIRSWNQS
SLSRSKSTEKLF Run BLAST on NCBI transcript from alignment at sc0000039:110939..114255- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004101 ID=TCONS_00004101|Name=TCONS_00004101|organism=Clytia hemisphaerica|type=transcript|length=3317bp|location=Sequence derived from alignment at sc0000039:110939..114255- (Clytia hemisphaerica)
TATGAAGGGGCCCATTGAAGTTGATGAAGATTCTGAATTTTAGAAAAACA
ATCAAATTTGTAGTATGTAATTTTCAAAAGATTCTAAAACGGGGTTCCGA
ATTATGATTGGCTAAACAAGCTTTTCGATTTGCTTGACGTACCCTAGAGT
AGAGATTGGCGCTGGCACATCGGGTGGTTAGTTATAAGATTAGTCCATAG
ATAACTTATTACTCAAAATAGTTTAAGATTATGCACCNTAAGATTAGTCC
ATAGATAACCTATTAATCAAAAGAGCTTGAGATTTTGCACTTCTGTCTCA
ATGACCAAGAGATTAAATGTGTAATGGGAAATATCATTTTAACTGTATAT
TGAATAACTCTATTCATTTTGAGAGAGAATTCCATAATGGTTGCTTTCAG
CATGTGCTACATTGCGAAAGTAAAACCCAAGAGTATTATAACAGACTAGT
GGCGTAAATAAATCGGTACAGCCGAATAAAGCGCCGAGTTTCAGCCTGAC
AATCTAGTAAAACACCATTTTTAAGGCTGGTAGTAGTAGGTCCGACTACT
GACAAGCTTTCTGACGAAAAAGGGATTACGTTACAGAGAAAATGACAATG
TCTCAGTTTGGAACAGTTCGACGGTTGTTTGTTTTTCAGTGAAAAGCAAC
TATCATTTTATCAAATATTTTGTTTCCATCATTGGAAGACCCTAGTAAAT
ATAGTTTTAATGTTGTAGGTATGCAATACAAATAGTGGGATTACTTTCTT
ATCATCACGTCTCGATTTTCAACAAATCTTTTTTTTTCTGCAGAAATGCG
TTCTTAATCTTTTGAAATATCAATTCATTTGGAATTTGTTTCTACCGCGA
AAGTATATCAAAGAATGACAATCAAAGTGGACGCACAACAACAGACCAAA
ATGAGACTTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAA
AATCGTGGTGTTGGGTGAAAAATATTGCGGAAAGACAGGTAAGTTGGATC
CAATCACATCTAGCTGACTTTTTTAAATATTGATATGCCTCGTGATTATA
CTTCGCAGTAAAAGCCAAAAGCTGATACAGGCTAGATCTTTATTGGTCAA
TTTAAGTCAATTTTGAACTTTTACAAAGGCTGCGATCACCACGTTGTAGA
GAACTGCGACATTTGTTCCGGAAAAATCTTGGAATCAGTATCAAAAAATT
AGATGCACGTAGGTGTCTAAAATATGACCGGCAACCAGTATTGAATATCT
TGAAACCAAAAAAATATGACCAGCAAATACGAGCAAATATATCATTTTTT
GATGATTCATGAAACATCAGGCATTGCATCCCTCTTTGATAAAACAACAT
TGTGGGTTGACCCAAAACATCATGACAAACCCATACAACATAAATCAGTT
ATGTCAGAAGGAGAAAGAAACCCTGCTGATGGAAAAATACCTTCCTCCGC
AGAAAATGTATGGACGGAGGTTTGTGTACAAGATAAACAAGCACGGATTA
GGATATATGATTATGCAATGTTAGCTTTCTCAANTGCTGATGGAAAAATA
CCTTCCTCCGCAGAAAATGTATGGACGGAGGTTTGTGTACGAGATAAACA
AGTACGGATTAGGATATATGATTATGCAATGTTTGCTTTCTCAAGTAATC
AGTAAAACTAAATCTCGTGTTAAACGTTATTATAAACAGCATTTTTTCAA
GATTCTTGATTTTTTGTCTACTACTTGTCTGTAGATCAGGTCTGACTTTG
TAAAACTAACTAGAACATCAAAGTTATTATTGACTAAGAACCTAAATTTT
GCTGATTGAATCAAGTGAGCATCTGTACCATACCTATGTTAGTGCTAACC
GAAGCTAAGTTGAGTAAATGTCTGCAAATGATTCAATTTAAGGGACTTTG
TAGAAAGATTTTTAAATTACTTCCACAACTATAAAACTGGGAAACACCAG
AAAGTGGAGATACTAGATCCAAAAAAGATAGAGACTACTCTAAAAAGTCT
TCACAACATCCCTGTAAGTTTCAAATGTAAATAACAAAAATACAACCATA
CAGTACCCACTTCAACTAAATTTCAAAATTCGATATGGAAGCAAAGTGAT
ATATTTTCACATTTTTGACTCGTTTTAGCGTTGACAGTTCGATATTTAAC
GGGGAAGTTCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTC
ATCAAGCAAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACT
TCACAAAATGTAAGTAGAATAGAAAACACCCCTGTCTCAAACAGTGTAAC
AGTACATAAAAGTTTCACCGAGGCAAAAGGAGTCCTTGAGCGCTTGCCCC
TTTCAGAAATGACTGGTAGCAGTTGAAACTTTTAGCTTTAGTTTCCAGGG
TGAGCTTATCTGTATTTCTTACACATTTTCTCCTTTTCCATACAACCCTT
ACTATAAAAATGAACTACATATTTCAAAACTTAGGAACAGTATTTTTGAT
ATTTTCAGACAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATT
GTGTATGCTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTT
AAAACATGTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTA
ATAAATCGGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAA
TATCTAGCTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGAC
GGATTATGAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGA
ATGATCGACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTG
ATTAATGACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAG
GGCGAGATCTCTGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTTGGAC
AAAGTAAAAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAA
TCGAGTCTCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGAC
TTGAGGGAAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAG
ATTTTGGGCTGATTGAATTATGTGATTGTCAACACGGCTTGAAAATTTTC
AGAGTTTAGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAG
TATTTGCTAATAAATTGACTCTCAATTTTCATTTTTCTGTGTTTTCACCA
GAAGGTTTTTCTTTTTTTGCAAATGGAAGCTGATGTTTTAAGAATCTATA
ATAACTCTGGTAAACAT Coding sequence (CDS) from alignment at sc0000039:110939..114255- >TCONS_00004101 ID=TCONS_00004101|Name=TCONS_00004101|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at sc0000039:110939..114255- (Clytia hemisphaerica)
ACAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATGC
TATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATG
TTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATCG
GACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAGC
TAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTATG
AGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCGA
CATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATGA
CAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGAT
CTCTGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAAA
AGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTCT
CAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGCGTTGACAGTTCGATA
TTTAACGGGGAAGTTCATTTACGATTATGCGACCGGTGAAGATTTCATTT
ACCCTCATCAAGCAAACTTGAACAACGGAGATGTCCAAATTAATATTGTC
GATACTTCACAAAATATGACAATCAAAGTGGACGCACAACAACAGACCAA
AATGAGACTTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTA
AAATCGTGGTGTTGGGTGAAAAATATTGCGGAAAGACAGACAGTGACCAG
CGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATGCTATCAACAGTA
AATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACATGTTGTTGCTGTC
AGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATCGGACATGTGGCA
TTATCGGACAGTTATGAGATCAGATGGTGAATATCTAGCTAAACAATACG
GATGTAAATATTTCGAACTTTCCGCGTTGACGGATTATGAGAAGGTTCAG
CGCATGTTTAATGTCATGTTAAAATTGATGAATGATCGACATACGGATAA
AGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATGACAGTTCACCGC
CCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGATCTCTGCATTTA
CCTAAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAAAAGCCCGATATT
ATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTCTCAGTCGATCTA
AATCAACAGAAAAGCTGTTTTAGCGTTGACAGTTCGATATTTAACGGGGA
AGTTCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAA
GCAAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACA
AAATATGACAATCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTT
CTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTG
TTGGGTGAAAAATATTGCGGAAAGACAGACAGTGACCAGCGCGATTGTGG
ATGCAGATGGAGTGATCATTGTGTATGCTATCAACAGTAAATCAAGTTTC
CACAGAGCTGAAGAACTTTTAAAACATGTTGTTGCTGTCAGTTGTAAACC
TTCTATCGCGATCGCTGCTAATAAATCGGACATGTGGCATTATCGGACAG
TTATGAGATCAGATGGTGAATATCTAGCTAAACAATACGGATGTAAATAT
TTCGAACTTTCCGCGTTGACGGATTATGAGAAGGTTCAGCGCATGTTTAA
TGTCATGTTAAAATTGATGAATGATCGACATACGGATAAAGAACTTATTG
AGAGTAAATCTGCTATTGTGATTAATGACAGTTCACCGCCCCCGATTGAA
GACTTTGAAGGGCGTCGAAGGGCGAGATCTCTGCATTTACCTAAAGAAAA
TAAAGCTGTTAAAGTTGGACAAAGTAAAAGCCCGATATTATTCCGAAAAT
TGATTCGATCTTGGAATCAATCGAGTCTCAGTCGATCTAAATCAACAGAA
AAGCTGTTTTAGCGTTGACAGTTCGATATTTAACGGGGAAGTTCATTTAC
GATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCAAACTTGAA
CAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAAATATGACAA
TCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTCTTCGTCACCG
CTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGAAAA
ATATTGCGGAAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004101-exon-sc0000039-1575043694:114194..114255 | TCONS_00004101-exon-sc0000039-1575043694:114194..114255 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1575043694:113268..113462 | TCONS_00004101-exon-sc0000039-1575043694:113268..113462 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1575043694:111997..112127 | TCONS_00004101-exon-sc0000039-1575043694:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1575043694:110939..111747 | TCONS_00004101-exon-sc0000039-1575043694:110939..111747 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1510915933:114194..114255 | TCONS_00004101-exon-sc0000039-1510915933:114194..114255 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1510915933:113268..113462 | TCONS_00004101-exon-sc0000039-1510915933:113268..113462 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1510915933:111997..112127 | TCONS_00004101-exon-sc0000039-1510915933:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1510915933:110939..111747 | TCONS_00004101-exon-sc0000039-1510915933:110939..111747 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1491911889:114194..114255 | TCONS_00004101-exon-sc0000039-1491911889:114194..114255 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1491911889:113268..113462 | TCONS_00004101-exon-sc0000039-1491911889:113268..113462 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1491911889:111997..112127 | TCONS_00004101-exon-sc0000039-1491911889:111997..112127 | Clytia hemisphaerica | exon |
| TCONS_00004101-exon-sc0000039-1491911889:110939..111747 | TCONS_00004101-exon-sc0000039-1491911889:110939..111747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:110939..114255 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00004101 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.695e-20 Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 2
Query: 203 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 775
++ KI V+G GKTAL VR+LT +FI DY +Y Q + + + + DT +N+++ + I AD V+IV++I S+ +L +HV + + + + + ANK+D+ H + V G LA GC ++E+S +Y V F+V+ K ++ + E + +I P ++D + R
Sbjct: 30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
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