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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003538 ID=TCONS_00003538|Name=TCONS_00003538|organism=Clytia hemisphaerica|type=transcript|length=2402bpRun BLAST on NCBI protein sequence of TCONS_00003538-protein >TCONS_00003538-protein ID=TCONS_00003538-protein|Name=TCONS_00003538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp KLIKTNMGKELCSFPLSPKQLNILRQGGFVQDTDVIELSPSQLAEELGIARun BLAST on NCBI transcript from alignment at sc0000030:113878..145087+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003538 ID=TCONS_00003538|Name=TCONS_00003538|organism=Clytia hemisphaerica|type=transcript|length=31210bp|location=Sequence derived from alignment at sc0000030:113878..145087+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:113878..145087+ >TCONS_00003538 ID=TCONS_00003538|Name=TCONS_00003538|organism=Clytia hemisphaerica|type=CDS|length=11370bp|location=Sequence derived from alignment at sc0000030:113878..145087+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003538 vs. Swiss-Prot (Human)
Match: RA51C (DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 2.962e-101 Identity = 163/352 (46.31%), Postives = 235/352 (66.76%), Query Frame = 3
Query: 3 KLIKTNMGKELCSFPLSPKQLNILRQGGFVQDTDVIELSPSQLAEELGIALKDSLAILNIIK----NNKADKLPVEKS-----AYDLLKEEEEETSIVTFCAALDEMVGGGIPLGKVTEFCGGPGMGKTQFGIQLAVDAIIPELFGGVGGESIYIDCEGSFICERVVEIAKAASNHIRSVAESNSEEEGTREALQEFTLQSILQNIHVYRCHDYIQLIALSHILPDVLKNNGKVKIIILDSIAFHFRHDFEDMALRTRLLHGLVQSFMKMAHDHGLAVRVVIMNQMTTKIADDEKHSKLIPALGTSWGHACTIRIVLQTMNGQRFAHLLKSPTMQESTAPFDITIDGIRDVI 1031
K + M ++L SFPLSP L GF +++E+ PS+L++E+GI+ ++L L II+ NK +S A +LL++E + I+TFC+ALD+++GGG+PL K TE CG PG+GKTQ +QLAVD IPE FGGV GE+++ID EGSF+ +RVV++A A H++ +AE + EE R+AL++FTL +IL +I+ +RC DY +L+A ++LPD L + KV+++I+D IAF FRHD +D++LRTRLL+GL Q + +A++H LA V++ NQMTTKI D + L+PALG SWGHA TIR++ QR A L KSP+ +E T F I G RD +
Sbjct: 4 KTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEH-RKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLA--VILTNQMTTKI--DRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350 The following BLAST results are available for this feature:
BLAST of TCONS_00003538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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