TCONS_00003538-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003538-protein
Unique NameTCONS_00003538-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003538-protein ID=TCONS_00003538-protein|Name=TCONS_00003538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
KLIKTNMGKELCSFPLSPKQLNILRQGGFVQDTDVIELSPSQLAEELGIA
LKDSLAILNIIKNNKADKLPVEKSAYDLLKEEEEETSIVTFCAALDEMVG
GGIPLGKVTEFCGGPGMGKTQFGIQLAVDAIIPELFGGVGGESIYIDCEG
SFICERVVEIAKAASNHIRSVAESNSEEEGTREALQEFTLQSILQNIHVY
RCHDYIQLIALSHILPDVLKNNGKVKIIILDSIAFHFRHDFEDMALRTRL
LHGLVQSFMKMAHDHGLAVRVVIMNQMTTKIADDEKHSKLIPALGTSWGH
ACTIRIVLQTMNGQRFAHLLKSPTMQESTAPFDITIDGIRDVIAPEVREE
PSRDQIESDFIGHFNDGQQPIKRLRTEP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001979XLOC_001979Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003538TCONS_00003538Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR016467DNA_recomb/repair_RecA-like
IPR020588RecA_ATP-bd
IPR033925Rad51_DMC1_RadA
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 73..341
e-value: 8.4E-40
score: 136.5
NoneNo IPR availableGENE3D3.40.50.300coord: 86..347
e-value: 1.7E-35
score: 122.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..378
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 3..344
e-value: 1.5E-65
score: 219.3
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 84..277
score: 41.742
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 88..340
e-value: 1.81644E-73
score: 229.778
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 88..342

Blast
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BLAST of TCONS_00003538-protein vs. Swiss-Prot (Human)
Match: RA51C (DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.509e-107
Identity = 163/352 (46.31%), Postives = 235/352 (66.76%), Query Frame = 0 
Query:    1 KLIKTNMGKELCSFPLSPKQLNILRQGGFVQDTDVIELSPSQLAEELGIALKDSLAILNIIK----NNKADKLPVEKS-----AYDLLKEEEEETSIVTFCAALDEMVGGGIPLGKVTEFCGGPGMGKTQFGIQLAVDAIIPELFGGVGGESIYIDCEGSFICERVVEIAKAASNHIRSVAESNSEEEGTREALQEFTLQSILQNIHVYRCHDYIQLIALSHILPDVLKNNGKVKIIILDSIAFHFRHDFEDMALRTRLLHGLVQSFMKMAHDHGLAVRVVIMNQMTTKIADDEKHSKLIPALGTSWGHACTIRIVLQTMNGQRFAHLLKSPTMQESTAPFDITIDGIRDVI 343
            K  +  M ++L SFPLSP     L   GF    +++E+ PS+L++E+GI+  ++L  L II+     NK       +S     A +LL++E  +  I+TFC+ALD+++GGG+PL K TE CG PG+GKTQ  +QLAVD  IPE FGGV GE+++ID EGSF+ +RVV++A A   H++ +AE +  EE  R+AL++FTL +IL +I+ +RC DY +L+A  ++LPD L  + KV+++I+D IAF FRHD +D++LRTRLL+GL Q  + +A++H LA  V++ NQMTTKI  D   + L+PALG SWGHA TIR++      QR A L KSP+ +E T  F I   G RD +
Sbjct:    4 KTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEH-RKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLA--VILTNQMTTKI--DRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350
The following BLAST results are available for this feature:
BLAST of TCONS_00003538-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA51C1.509e-10746.31DNA repair protein RAD51 homolog 3 OS=Homo sapiens... [more]
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