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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=transcript|length=2120bp
GGTTTTCCTTTTAAGTTTAAATTTTGTCTATAAAATGCATAATAAAAAAA
TCAGTTAAAATTCTTTATAATTCTTCAAAATTGTACTTATTTGCTCGAAT
GTGATTGAAGTGTgggatttatgaaattttctaaaaatataaatttttta
gttttaataaaaatttgaatataatataattttttttactaaacttcgaa
cctgaacctttcatgtctttaaaaacacattgcttacctggtttgcagaa
aacacttttgaacacgaatggttcagttttcaaagtttttagaaACACAG
AATGTCCTGTTAAAAAAAGTCCCGACTGGcaaaatttcccgatttttccc
cgattttctaACCTGATTTTCAGCCcgatttttatctgattggttCCGAC
AGGACACTGCACGAGCTTCAAAATCGTCTTGAAAAACACCTTGAACACTA
GAGAAAACACTGAATGGTTCAGAAACTTGCCGGTGTTTCAGGTAATGCAT
TTTGGCTTGGATTTTATGGAGAAAGTTGAGAGTTGATTTATGGAAATCNN
NNNNNNNNNNNNNNNNNNNCCCAGGAACACAGGAAATGCTGAAAACACAC
CACCTCGAGAGGTAAGGTGTTTCTGGGaaatgatttttgccaaaaacacc
ccaaaaaagcttgaaaggttcagaaaaagtgtttcagaCAAAGTGTATTC
AGGGTTTTCGagacttttttgacatgaaaggttcaggctctATGCAAGAG
CGAGGAAAAAGTAAAGTTTTCAAGAATCTTAACCCATTTAAGTTGACTAT
TGATTGCTACATTACTAATAATCTAAAATCAGAGAGGaaatagaaatttc
aaaattggacagAAAAGGCTTCACATTTagttagttttcaaaagaattat
TCTGACAAGATTGACAGCAGATAAAAGCCAGCCATTTCAAAAGCAtgaca
aaattttcttttttacaggGTTCAAAAAGGAATCAAGAAAATAGTTCCCC
TGGGTTTCCCTGAGTTTTTGAACACAATAAGGCTTTATTTCCCCTGAATA
TGACTCAATTTTTTCCAGGGTTTCCAGGGTCTTTCTGAACCCTGTTTTAG
TGGTACGTcagcaaaaaactgcaattgttaattaaaaaaaatattaaata
ccTAATTTGAAGATTAGCTGTTGGTTGTGGTTGCCCTAAAGATCACTtgc
atttttaattattttaaattaagtattcgatgaaaatagaaaaaatctgc
AAAGGAACTGACTACTAAATGATGAcatatcaaaagaatttgacgAGATT
CTTCTCTGAGCTAAAAAACAAATGCATCACATTGAACAATTATTGAATAC
CTTGCTTCAGTTAAAGATTGGCTTTCTTATTTGGTTGTGGTGGTCTAAAC
ATTACTGGTGACAAGAACCCGTCAAATGTTACAGCTTCTTTCACTGTGAT
AAAACCATTTAAATGCATTGCTCGAAAAGCCGGATTAATTTTCCCAGCTT
GTATTTTATCTAAAGGTATCATACCTTCACCAAGCATACCATACTTCTCA
CCAAACTCATCATAAACAGATTTTTGAATCCATTCCGAAATTCGAAGACC
ACGATATTCAGGTAATGTGACTCCATCTTCAAGGTAAAGAATGGTCTGTA
AATTATACTTATCATAAGTTAGATCAATAACATCGTGATATAGATCGTAT
TGTTGCTGGCAATATTTTCGAATGTGTTTACTGTAATTTGTATTTTGTGT
AATGGATTTGTTAGGCTCTACAAAATATTTCAACCATTCTTCTTTGctta
taaaataatttaatgagCATGCAACCACTTTATCTGATTTATCCAAAGCT
ACATATGAAGCTCCTTCAAATATTTTACGCTTTGCAAAATTTGGATCCAA
GATGGCTTCAACTTCAATTAAatctttcttttgttcttcACGAGTGATAC
CTAACCTTTTCATGTATGTTGGTAACAAATGCTTTGCCACAAGTTCAATA
ACTTGTTCAGAATGTTTTTCGATTATATACTTCGATTTTCGTAAGCCTTG
AACCATCCTGTGTTGATTTAGTATGATTGTACGTTTGAGTAGTTTTCTAG
AGGGAAACGCTGGTCATCAG Run BLAST on NCBI protein sequence of TCONS_00003512-protein >TCONS_00003512-protein ID=TCONS_00003512-protein|Name=TCONS_00003512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MVQGLRKSKYIIEKHSEQVIELVAKHLLPTYMKRLGITREEQKKDLIEVE
AILDPNFAKRKIFEGASYVALDKSDKVVACSLNYFISKEEWLKYFVEPNK
SITQNTNYSKHIRKYCQQQYDLYHDVIDLTYDKYNLQTILYLEDGVTLPE
YRGLRISEWIQKSVYDEFGEKYGMLGEGMIPLDKIQAGKINPAFRAMHLN
GFITVKEAVTFDGFLSPVMFRPPQPNKKANL Run BLAST on NCBI transcript from alignment at sc0000028:95400..97519 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=transcript|length=2120bp|location=Sequence derived from alignment at sc0000028:95400..97519 (Clytia hemisphaerica)
CTGATGACCAGCGTTTCCCTCTAGAAAACTACTCAAACGTACAATCATAC
TAAATCAACACAGGATGGTTCAAGGCTTACGAAAATCGAAGTATATAATC
GAAAAACATTCTGAACAAGTTATTGAACTTGTGGCAAAGCATTTGTTACC
AACATACATGAAAAGGTTAGGTATCACTCGTgaagaacaaaagaaagatT
TAATTGAAGTTGAAGCCATCTTGGATCCAAATTTTGCAAAGCGTAAAATA
TTTGAAGGAGCTTCATATGTAGCTTTGGATAAATCAGATAAAGTGGTTGC
ATGctcattaaattattttataagCAAAGAAGAATGGTTGAAATATTTTG
TAGAGCCTAACAAATCCATTACACAAAATACAAATTACAGTAAACACATT
CGAAAATATTGCCAGCAACAATACGATCTATATCACGATGTTATTGATCT
AACTTATGATAAGTATAATTTACAGACCATTCTTTACCTTGAAGATGGAG
TCACATTACCTGAATATCGTGGTCTTCGAATTTCGGAATGGATTCAAAAA
TCTGTTTATGATGAGTTTGGTGAGAAGTATGGTATGCTTGGTGAAGGTAT
GATACCTTTAGATAAAATACAAGCTGGGAAAATTAATCCGGCTTTTCGAG
CAATGCATTTAAATGGTTTTATCACAGTGAAAGAAGCTGTAACATTTGAC
GGGTTCTTGTCACCAGTAATGTTTAGACCACCACAACCAAATAAGAAAGC
CAATCTTTAACTGAAGCAAGGTATTCAATAATTGTTCAATGTGATGCATT
TGTTTTTTAGCTCAGAGAAGAATCTcgtcaaattcttttgatatgTCATC
ATTTAGTAGTCAGTTCCTTTgcagattttttctattttcatcgaatactt
aatttaaaataattaaaaatgcaAGTGATCTTTAGGGCAACCACAACCAA
CAGCTAATCTTCAAATTAggtatttaatattttttttaattaacaattgc
agttttttgctgACGTACCACTAAAACAGGGTTCAGAAAGACCCTGGAAA
CCCTGGAAAAAATTGAGTCATATTCAGGGGAAATAAAGCCTTATTGTGTT
CAAAAACTCAGGGAAACCCAGGGGAACTATTTTCTTGATTCCTTTTTGAA
CcctgtaaaaaagaaaattttgtcaTGCTTTTGAAATGGCTGGCTTTTAT
CTGCTGTCAATCTTGTCAGAataattcttttgaaaactaactAAATGTGA
AGCCTTTTctgtccaattttgaaatttctatttCCTCTCTGATTTTAGAT
TATTAGTAATGTAGCAATCAATAGTCAACTTAAATGGGTTAAGATTCTTG
AAAACTTTACTTTTTCCTCGCTCTTGCATagagcctgaacctttcatgtc
aaaaaagtctCGAAAACCCTGAATACACTTTGtctgaaacactttttctg
aacctttcaagcttttttggggtgtttttggcaaaaatcatttCCCAGAA
ACACCTTACCTCTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTCCTGG
GNNNNNNNNNNNNNNNNNNNNNGATTTCCATAAATCAACTCTCAACTTTC
TCCATAAAATCCAAGCCAAAATGCATTACCTGAAACACCGGCAAGTTTCT
GAACCATTCAGTGTTTTCTCTAGTGTTCAAGGTGTTTTTCAAGACGATTT
TGAAGCTCGTGCAGTGTCCTGTCGGaaccaatcagataaaaatcgGGCTG
AAAATCAGGTtagaaaatcggggaaaaatcgggaaattttgCCAGTCGGG
ACTTTTTTTAACAGGACATTCTGTGTttctaaaaactttgaaaactgaac
cattcgtgttcaaaagtgttttctgcaaaccaggtaagcaatgtgttttt
aaagacatgaaaggttcaggttcgaagtttagtaaaaaaaattatattat
attcaaatttttattaaaactaaaaaatttatatttttagaaaatttcat
aaatcccACACTTCAATCACATTCGAGCAAATAAGTACAATTTTGAAGAA
TTATAAAGAATTTTAACTGATTTTTTTATTATGCATTTTATAGACAAAAT
TTAAACTTAAAAGGAAAACC Coding sequence (CDS) from alignment at sc0000028:95400..97519 >TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000028:95400..97519 (Clytia hemisphaerica)
ATGGTTCAAGGCTTACGAAAATCGAAGTATATAATCGAAAAACATTCTGA
ACAAGTTATTGAACTTGTGGCAAAGCATTTGTTACCAACATACATGAAAA
GGTTAGGTATCACTCGTgaagaacaaaagaaagatTTAATTGAAGTTGAA
GCCATCTTGGATCCAAATTTTGCAAAGCGTAAAATATTTGAAGGAGCTTC
ATATGTAGCTTTGGATAAATCAGATAAAGTGGTTGCATGctcattaaatt
attttataagCAAAGAAGAATGGTTGAAATATTTTGTAGAGCCTAACAAA
TCCATTACACAAAATACAAATTACAGTAAACACATTCGAAAATATTGCCA
GCAACAATACGATCTATATCACGATGTTATTGATCTAACTTATGATAAGT
ATAATTTACAGACCATTCTTTACCTTGAAGATGGAGTCACATTACCTGAA
TATCGTGGTCTTCGAATTTCGGAATGGATTCAAAAATCTGTTTATGATGA
GTTTGGTGAGAAGTATGGTATGCTTGGTGAAGGTATGATACCTTTAGATA
AAATACAAGCTGGGAAAATTAATCCGGCTTTTCGAGCAATGCATTTAAAT
GGTTTTATCACAGTGAAAGAAGCTGTAACATTTGACGGGTTCTTGTCACC
AGTAATGTTTAGACCACCACAACCAAATAAGAAAGCCAATCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003512-exon-sc0000028-1491911889:95400..97519 | TCONS_00003512-exon-sc0000028-1491911889:95400..97519 | Clytia hemisphaerica | exon |
| TCONS_00003512-exon-sc0000028-1510915933:95400..97519 | TCONS_00003512-exon-sc0000028-1510915933:95400..97519 | Clytia hemisphaerica | exon |
| TCONS_00003512-exon-sc0000028-1575043694:95400..97519 | TCONS_00003512-exon-sc0000028-1575043694:95400..97519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:95400..97519 . |
Blast
The following BLAST results are available for this feature:
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