TCONS_00003512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003512
Unique NameTCONS_00003512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=transcript|length=2120bp
GGTTTTCCTTTTAAGTTTAAATTTTGTCTATAAAATGCATAATAAAAAAA
TCAGTTAAAATTCTTTATAATTCTTCAAAATTGTACTTATTTGCTCGAAT
GTGATTGAAGTGTgggatttatgaaattttctaaaaatataaatttttta
gttttaataaaaatttgaatataatataattttttttactaaacttcgaa
cctgaacctttcatgtctttaaaaacacattgcttacctggtttgcagaa
aacacttttgaacacgaatggttcagttttcaaagtttttagaaACACAG
AATGTCCTGTTAAAAAAAGTCCCGACTGGcaaaatttcccgatttttccc
cgattttctaACCTGATTTTCAGCCcgatttttatctgattggttCCGAC
AGGACACTGCACGAGCTTCAAAATCGTCTTGAAAAACACCTTGAACACTA
GAGAAAACACTGAATGGTTCAGAAACTTGCCGGTGTTTCAGGTAATGCAT
TTTGGCTTGGATTTTATGGAGAAAGTTGAGAGTTGATTTATGGAAATCNN
NNNNNNNNNNNNNNNNNNNCCCAGGAACACAGGAAATGCTGAAAACACAC
CACCTCGAGAGGTAAGGTGTTTCTGGGaaatgatttttgccaaaaacacc
ccaaaaaagcttgaaaggttcagaaaaagtgtttcagaCAAAGTGTATTC
AGGGTTTTCGagacttttttgacatgaaaggttcaggctctATGCAAGAG
CGAGGAAAAAGTAAAGTTTTCAAGAATCTTAACCCATTTAAGTTGACTAT
TGATTGCTACATTACTAATAATCTAAAATCAGAGAGGaaatagaaatttc
aaaattggacagAAAAGGCTTCACATTTagttagttttcaaaagaattat
TCTGACAAGATTGACAGCAGATAAAAGCCAGCCATTTCAAAAGCAtgaca
aaattttcttttttacaggGTTCAAAAAGGAATCAAGAAAATAGTTCCCC
TGGGTTTCCCTGAGTTTTTGAACACAATAAGGCTTTATTTCCCCTGAATA
TGACTCAATTTTTTCCAGGGTTTCCAGGGTCTTTCTGAACCCTGTTTTAG
TGGTACGTcagcaaaaaactgcaattgttaattaaaaaaaatattaaata
ccTAATTTGAAGATTAGCTGTTGGTTGTGGTTGCCCTAAAGATCACTtgc
atttttaattattttaaattaagtattcgatgaaaatagaaaaaatctgc
AAAGGAACTGACTACTAAATGATGAcatatcaaaagaatttgacgAGATT
CTTCTCTGAGCTAAAAAACAAATGCATCACATTGAACAATTATTGAATAC
CTTGCTTCAGTTAAAGATTGGCTTTCTTATTTGGTTGTGGTGGTCTAAAC
ATTACTGGTGACAAGAACCCGTCAAATGTTACAGCTTCTTTCACTGTGAT
AAAACCATTTAAATGCATTGCTCGAAAAGCCGGATTAATTTTCCCAGCTT
GTATTTTATCTAAAGGTATCATACCTTCACCAAGCATACCATACTTCTCA
CCAAACTCATCATAAACAGATTTTTGAATCCATTCCGAAATTCGAAGACC
ACGATATTCAGGTAATGTGACTCCATCTTCAAGGTAAAGAATGGTCTGTA
AATTATACTTATCATAAGTTAGATCAATAACATCGTGATATAGATCGTAT
TGTTGCTGGCAATATTTTCGAATGTGTTTACTGTAATTTGTATTTTGTGT
AATGGATTTGTTAGGCTCTACAAAATATTTCAACCATTCTTCTTTGctta
taaaataatttaatgagCATGCAACCACTTTATCTGATTTATCCAAAGCT
ACATATGAAGCTCCTTCAAATATTTTACGCTTTGCAAAATTTGGATCCAA
GATGGCTTCAACTTCAATTAAatctttcttttgttcttcACGAGTGATAC
CTAACCTTTTCATGTATGTTGGTAACAAATGCTTTGCCACAAGTTCAATA
ACTTGTTCAGAATGTTTTTCGATTATATACTTCGATTTTCGTAAGCCTTG
AACCATCCTGTGTTGATTTAGTATGATTGTACGTTTGAGTAGTTTTCTAG
AGGGAAACGCTGGTCATCAG
Run BLAST on NCBI

protein sequence of TCONS_00003512-protein

>TCONS_00003512-protein ID=TCONS_00003512-protein|Name=TCONS_00003512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MVQGLRKSKYIIEKHSEQVIELVAKHLLPTYMKRLGITREEQKKDLIEVE
AILDPNFAKRKIFEGASYVALDKSDKVVACSLNYFISKEEWLKYFVEPNK
SITQNTNYSKHIRKYCQQQYDLYHDVIDLTYDKYNLQTILYLEDGVTLPE
YRGLRISEWIQKSVYDEFGEKYGMLGEGMIPLDKIQAGKINPAFRAMHLN
GFITVKEAVTFDGFLSPVMFRPPQPNKKANL
Run BLAST on NCBI

transcript from alignment at sc0000028:95400..97519

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=transcript|length=2120bp|location=Sequence derived from alignment at sc0000028:95400..97519 (Clytia hemisphaerica)
CTGATGACCAGCGTTTCCCTCTAGAAAACTACTCAAACGTACAATCATAC TAAATCAACACAGGATGGTTCAAGGCTTACGAAAATCGAAGTATATAATC GAAAAACATTCTGAACAAGTTATTGAACTTGTGGCAAAGCATTTGTTACC AACATACATGAAAAGGTTAGGTATCACTCGTgaagaacaaaagaaagatT TAATTGAAGTTGAAGCCATCTTGGATCCAAATTTTGCAAAGCGTAAAATA TTTGAAGGAGCTTCATATGTAGCTTTGGATAAATCAGATAAAGTGGTTGC ATGctcattaaattattttataagCAAAGAAGAATGGTTGAAATATTTTG TAGAGCCTAACAAATCCATTACACAAAATACAAATTACAGTAAACACATT CGAAAATATTGCCAGCAACAATACGATCTATATCACGATGTTATTGATCT AACTTATGATAAGTATAATTTACAGACCATTCTTTACCTTGAAGATGGAG TCACATTACCTGAATATCGTGGTCTTCGAATTTCGGAATGGATTCAAAAA TCTGTTTATGATGAGTTTGGTGAGAAGTATGGTATGCTTGGTGAAGGTAT GATACCTTTAGATAAAATACAAGCTGGGAAAATTAATCCGGCTTTTCGAG CAATGCATTTAAATGGTTTTATCACAGTGAAAGAAGCTGTAACATTTGAC GGGTTCTTGTCACCAGTAATGTTTAGACCACCACAACCAAATAAGAAAGC CAATCTTTAACTGAAGCAAGGTATTCAATAATTGTTCAATGTGATGCATT TGTTTTTTAGCTCAGAGAAGAATCTcgtcaaattcttttgatatgTCATC ATTTAGTAGTCAGTTCCTTTgcagattttttctattttcatcgaatactt aatttaaaataattaaaaatgcaAGTGATCTTTAGGGCAACCACAACCAA CAGCTAATCTTCAAATTAggtatttaatattttttttaattaacaattgc agttttttgctgACGTACCACTAAAACAGGGTTCAGAAAGACCCTGGAAA CCCTGGAAAAAATTGAGTCATATTCAGGGGAAATAAAGCCTTATTGTGTT CAAAAACTCAGGGAAACCCAGGGGAACTATTTTCTTGATTCCTTTTTGAA CcctgtaaaaaagaaaattttgtcaTGCTTTTGAAATGGCTGGCTTTTAT CTGCTGTCAATCTTGTCAGAataattcttttgaaaactaactAAATGTGA AGCCTTTTctgtccaattttgaaatttctatttCCTCTCTGATTTTAGAT TATTAGTAATGTAGCAATCAATAGTCAACTTAAATGGGTTAAGATTCTTG AAAACTTTACTTTTTCCTCGCTCTTGCATagagcctgaacctttcatgtc aaaaaagtctCGAAAACCCTGAATACACTTTGtctgaaacactttttctg aacctttcaagcttttttggggtgtttttggcaaaaatcatttCCCAGAA ACACCTTACCTCTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTCCTGG GNNNNNNNNNNNNNNNNNNNNNGATTTCCATAAATCAACTCTCAACTTTC TCCATAAAATCCAAGCCAAAATGCATTACCTGAAACACCGGCAAGTTTCT GAACCATTCAGTGTTTTCTCTAGTGTTCAAGGTGTTTTTCAAGACGATTT TGAAGCTCGTGCAGTGTCCTGTCGGaaccaatcagataaaaatcgGGCTG AAAATCAGGTtagaaaatcggggaaaaatcgggaaattttgCCAGTCGGG ACTTTTTTTAACAGGACATTCTGTGTttctaaaaactttgaaaactgaac cattcgtgttcaaaagtgttttctgcaaaccaggtaagcaatgtgttttt aaagacatgaaaggttcaggttcgaagtttagtaaaaaaaattatattat attcaaatttttattaaaactaaaaaatttatatttttagaaaatttcat aaatcccACACTTCAATCACATTCGAGCAAATAAGTACAATTTTGAAGAA TTATAAAGAATTTTAACTGATTTTTTTATTATGCATTTTATAGACAAAAT TTAAACTTAAAAGGAAAACC

Coding sequence (CDS) from alignment at sc0000028:95400..97519

>TCONS_00003512 ID=TCONS_00003512|Name=TCONS_00003512|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000028:95400..97519 (Clytia hemisphaerica)
ATGGTTCAAGGCTTACGAAAATCGAAGTATATAATCGAAAAACATTCTGA
ACAAGTTATTGAACTTGTGGCAAAGCATTTGTTACCAACATACATGAAAA
GGTTAGGTATCACTCGTgaagaacaaaagaaagatTTAATTGAAGTTGAA
GCCATCTTGGATCCAAATTTTGCAAAGCGTAAAATATTTGAAGGAGCTTC
ATATGTAGCTTTGGATAAATCAGATAAAGTGGTTGCATGctcattaaatt
attttataagCAAAGAAGAATGGTTGAAATATTTTGTAGAGCCTAACAAA
TCCATTACACAAAATACAAATTACAGTAAACACATTCGAAAATATTGCCA
GCAACAATACGATCTATATCACGATGTTATTGATCTAACTTATGATAAGT
ATAATTTACAGACCATTCTTTACCTTGAAGATGGAGTCACATTACCTGAA
TATCGTGGTCTTCGAATTTCGGAATGGATTCAAAAATCTGTTTATGATGA
GTTTGGTGAGAAGTATGGTATGCTTGGTGAAGGTATGATACCTTTAGATA
AAATACAAGCTGGGAAAATTAATCCGGCTTTTCGAGCAATGCATTTAAAT
GGTTTTATCACAGTGAAAGAAGCTGTAACATTTGACGGGTTCTTGTCACC
AGTAATGTTTAGACCACCACAACCAAATAAGAAAGCCAATCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001954XLOC_001954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003512-proteinTCONS_00003512-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003512-exon-sc0000028-1491911889:95400..97519TCONS_00003512-exon-sc0000028-1491911889:95400..97519Clytia hemisphaericaexon
TCONS_00003512-exon-sc0000028-1510915933:95400..97519TCONS_00003512-exon-sc0000028-1510915933:95400..97519Clytia hemisphaericaexon
TCONS_00003512-exon-sc0000028-1575043694:95400..97519TCONS_00003512-exon-sc0000028-1575043694:95400..97519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:95400..97519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03613 0.761062 1.48047 1.6148 2.53718 2.45609 3.13379 2.60793 2.38477 2.03102 2.07622 1.60674 1.83208 2.11967 2.16355 2.47245 2.15755 2.08042 1.1697 1.42834 1.53171 1.99716 2.73252 2.30832 2.12303 2.51973 1.89629 1.53359 3.26513 2.68119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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