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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003164 ID=TCONS_00003164|Name=TCONS_00003164|organism=Clytia hemisphaerica|type=transcript|length=642bp
AATCTTTCGCACTACCTCAAATTTTTTGAGTTGGCTTTAAGCATTATCTT
CACTATCGGTTATGGTCGTACCGTGGCGAAATCAATGCTTGGAAAATGTC
TGGTCATGACCTATGCTACGTTTAGTATTCCCATCACAACGGCATCAGTG
GTATTTTGTGGAAGATTCATCACAGCTGTCATCAAATATTTCGTCATCTC
TTTCGAATCAAGAGTATTGAAACACAACAAAATCACAAAGTTTCAACGCA
AAGTTACTTCAATCATAGTCATGTTGAATACGTTGGTGATTCTGATGTTA
GCCCTTTTATATCACATGACTTCTTTACAGAATCATGGCTTCTTCGAAGC
ATTTTATTTCACTTTTATATCCCTTACGACTATTGGTTTTGGAGACACCG
AATTTGATTTGAACTTTGTCGAAAATTTGAATGTAGCAGAAACTTGCTTA
TTCATTGCGTTGGACTGGTTACTATTCTATAGTAGTTATTCAATGCTGGC
TTCCTTGATTGGCATGGCTGTTTCTTTCGAAACTGAACGCCCGACAAAGT
CctaggaaaaaacattttcatattttatacCGATCAATTGTCTACACATT
GTATCTCCACGGCAACAAATTTGTTTGCGTTTTAAATAGGCA Run BLAST on NCBI protein sequence of TCONS_00003164-protein >TCONS_00003164-protein ID=TCONS_00003164-protein|Name=TCONS_00003164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
NLSHYLKFFELALSIIFTIGYGRTVAKSMLGKCLVMTYATFSIPITTASV
VFCGRFITAVIKYFVISFESRVLKHNKITKFQRKVTSIIVMLNTLVILML
ALLYHMTSLQNHGFFEAFYFTFISLTTIGFGDTEFDLNFVENLNVAETCL
FIALDWLLFYSSYSMLASLIGMAVSFETERPTKS Run BLAST on NCBI transcript from alignment at sc0000025:361811..363919- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003164 ID=TCONS_00003164|Name=TCONS_00003164|organism=Clytia hemisphaerica|type=transcript|length=2109bp|location=Sequence derived from alignment at sc0000025:361811..363919- (Clytia hemisphaerica)
AATCTTTCGCACTACCTCAAATTTTTTGAGTTGGCTTTAAGCATTATCTT
CACTATCGGTCAGTATCCTTAAAATGACTATAATATGTCTTACAGGTGGT
CCAAAAAAAGCTTCTGATGTTTGGTGATGTTTTTAGAGCTATCAAAGTGA
TCTGTAAGGTTTACTTTACTTTAATTTTGATGTATTAATTTTTACATTTT
GACAATTGGTTCAGGAGATATGATCACTTTAAACAATTTAAAAAGTACCA
AAAATGTCAAAAAAGAGTGATTGAAACAGGGGGGGGTACCAAGTCAGTGT
ACTGGACCATAGGGTACTAACTTGATTTTTGGATTTTTTNCAAATTTTGA
GGTAAAATTTGAGAAATTTCAAAAGATTTTGCCCTGAAAAGGGCAAAAAG
TTTCGAAGAATTACACTATAAGGGTCGATCTTCAGCCAAATTTTTCCTGC
AGTGTAAGGGACCGATTTTAGAGACCTGATTTTTGGCCGAACGTACGGTC
GTTTTCACCCCCTCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTTTTTTCAAT
TAACATCAATCCAACAAGGTTACTAAAAAACATAAAACAATAGAGCGGAT
TTGTTTTTATAAAACTTGAAAGCTTCGATTCGAGCGTTTACACATTCAAA
TTCTTGTTGTTGCCATAATGTAGATAGGGCCTTAAAAAAACGTAAACAAG
ATTGGAATTAAGGCCGGTCTCCACTTGCGCATGCTGCAACTCTGAAACAA
ATCCAATCAAGTAAACAGGAAACATTGGGAGAAAATCAGTGTACCAATTT
GTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGGTCCAGCTTGGACCTG
GCAAATTAGGCCAAATATACATGGGAATTCACTGGGTTTGTGTGTTTTTA
CCACTGAAATTAGTACAATGTACTTACTTCTCAGTGTGTATCAATTCAGA
ACACCACCCTTTTTAGTACAGTGTACCAACTTTTTCATTGTATTTTTCTC
AGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTCATTGTATTTTTC
TCAGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTCATTGTATTTT
TCTCAGAGGACCACCCTTTTAGTACACTGTACTAACTCAATTTAATCTAA
AAAATACACCACCCCACCAGCTATGGGCCAGTACACTGACTCGATACCCC
CCTCTGATTGATACTTGTTCGATTGGCTTTCTCCTTCTTTCTTTTCGTTT
GTTTCAATCGAACGGACACGCATTTTTACGACGTGATTAACTGTCGCATT
GATAATTAAGAAAATATTTAAAAGTTTAGTTTCACATTCTACATTCACAG
ATAAAATTGTATTACTTTATTCTAGGTTATGGTCGTACCGTGGCGAAATC
AATGCTTGGAAAATGTCTGGTCATGACCTATGCTACGTTTAGTATTCCCA
TCACAACGGCATCAGTGGTATTTTGTGGAAGATTCATCACAGCTGTCATC
AAATATTTCGTCATCTCTTTCGAATCAAGAGTATTGAAACACAACAAAAT
CACAAAGTTTCAACGCAAAGTTACTTCAATCATAGTCATGTTGAATACGT
TGGTGATTCTGATGTTAGCCCTTTTATATCACATGACTTCTTTACAGAAT
CATGGCTTCTTCGAAGCATTTTATTTCACTTTTATATCCCTTACGACTAT
TGGTTTTGGAGACACCGAATTTGATTTGAACTTTGTCGAAAATTTGAATG
TAGCAGAAACTTGCTTATTCATTGCGTTGGACTGGTTACTATTCTATAGT
AGTTATTCAATGCTGGCTTCCTTGATTGGCATGGCTGTTTCTTTCGAAAC
TGAACGCCCGACAAAGTCCTAGGAAAAAACATTTTCATATTTTATACCGA
TCAATTGTCTACACATTGTATCTCCACGGCAACAAATTTGTTTGCGTTTT
AAATAGGCA Coding sequence (CDS) from alignment at sc0000025:361811..363919- >TCONS_00003164 ID=TCONS_00003164|Name=TCONS_00003164|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000025:361811..363919- (Clytia hemisphaerica)
GTTATGGTCGTACCGTGGCGAAATCAATGCTTGGAAAATGTCTGGTCATG
ACCTATGCTACGTTTAGTATTCCCATCACAACGGCATCAGTGGTATTTTG
TGGAAGATTCATCACAGCTGTCATCAAATATTTCGTCATCTCTTTCGAAT
CAAGAGTATTGAAACACAACAAAATCACAAAGTTTCAACGCAAAGTTACT
TCAATCATAGTCATGTTGAATACGTTGGTGATTCTGATGTTAGCCCTTTT
ATATCACATGACTTCTTTACAGAATCATGGCTTCTTCGAAGCATTTTATT
TCACTTTTATATCCCTTACGACTATTGGTTTTGGAGACACCGAATTTGAT
TTGAACTTTGTCGAAAATTTGAATGTAGCAGAAACTTGCTTATTCATTGC
GTTGGACTGGTTACTATTCTATAGTAGTTATTCAATGCTGGCTTCCTTGA
TTGGCATGGCTGTTTCTTTCGAAACTGAACGCCCGACAAAGTCCTAGAAT
CTTTCGCACTACCTCAAATTTTTTGAGTTGGCTTTAAGCATTATCTTCAC
TATCGGTTATGGTCGTACCGTGGCGAAATCAATGCTTGGAAAATGTCTGG
TCATGACCTATGCTACGTTTAGTATTCCCATCACAACGGCATCAGTGGTA
TTTTGTGGAAGATTCATCACAGCTGTCATCAAATATTTCGTCATCTCTTT
CGAATCAAGAGTATTGAAACACAACAAAATCACAAAGTTTCAACGCAAAG
TTACTTCAATCATAGTCATGTTGAATACGTTGGTGATTCTGATGTTAGCC
CTTTTATATCACATGACTTCTTTACAGAATCATGGCTTCTTCGAAGCATT
TTATTTCACTTTTATATCCCTTACGACTATTGGTTTTGGAGACACCGAAT
TTGATTTGAACTTTGTCGAAAATTTGAATGTAGCAGAAACTTGCTTATTC
ATTGCGTTGGACTGGTTACTATTCTATAGTAGTTATTCAATGCTGGCTTC
CTTGATTGGCATGGCTGTTTCTTTCGAAACTGAACGCCCGACAAAGTCCT
AGAATCTTTCGCACTACCTCAAATTTTTTGAGTTGGCTTTAAGCATTATC
TTCACTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003164-exon-sc0000025-1575043694:363862..363919 | TCONS_00003164-exon-sc0000025-1575043694:363862..363919 | Clytia hemisphaerica | exon |
| TCONS_00003164-exon-sc0000025-1575043694:361811..362394 | TCONS_00003164-exon-sc0000025-1575043694:361811..362394 | Clytia hemisphaerica | exon |
| TCONS_00003164-exon-sc0000025-1510915933:363862..363919 | TCONS_00003164-exon-sc0000025-1510915933:363862..363919 | Clytia hemisphaerica | exon |
| TCONS_00003164-exon-sc0000025-1510915933:361811..362394 | TCONS_00003164-exon-sc0000025-1510915933:361811..362394 | Clytia hemisphaerica | exon |
| TCONS_00003164-exon-sc0000025-1491911889:363862..363919 | TCONS_00003164-exon-sc0000025-1491911889:363862..363919 | Clytia hemisphaerica | exon |
| TCONS_00003164-exon-sc0000025-1491911889:361811..362394 | TCONS_00003164-exon-sc0000025-1491911889:361811..362394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:361811..363919 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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