TCONS_00070285-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070285-protein
Unique NameTCONS_00070285-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070285-protein ID=TCONS_00070285-protein|Name=TCONS_00070285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
DQIVTRDRKLTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASI
PVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAK
AMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDG
KPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNH
ATAWGEGGGKKGTEIDVKKVVAELIRTRKDKSYDDATGGQDENRATAKSE
KDNNNHRQSKKLKTDDGGSVEVKTEITSNSSNSIDADANQKSKVQNGCSL
KGVRETDNIKTNGTSDKLSHLNIQKANSTECETNSTTESETSAMENKVKD
LSTLKCEENSNKESVAEKREGSSGKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043769XLOC_043769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070285TCONS_00070285Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluD
IPR006225PsdUridine_synth_RluC/D
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 33..351
e-value: 1.1E-59
score: 201.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..299
NoneNo IPR availableCDDcd02557PseudoU_synth_ScRIB2coord: 20..204
e-value: 2.27433E-95
score: 285.293
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 40..187
e-value: 7.3E-30
score: 104.1
IPR006225Pseudouridine synthase, RluC/RluDTIGRFAMTIGR00005TIGR00005coord: 7..208
e-value: 5.9E-61
score: 204.3
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 79..93
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 24..204

Blast
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BLAST of TCONS_00070285-protein vs. Swiss-Prot (Human)
Match: RUSD2 (RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 3.093e-87
Identity = 123/217 (56.68%), Postives = 161/217 (74.19%), Query Frame = 0 
Query:   10 LTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASIPVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAKAMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDGKPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNHATAWGEGGGKKGTEIDVKKVVAELIR 226
            L   D L+  VHRHEPPV  EP   L  ++D++V++KP+SIPVHPCGR+RHNTV+FILGK+H L+ LH +HR+DRLTSG+LMFAKT   ++ +   V  R +EK Y  RVEG+FP+E +  +EP+L +S+K+GVC+V   GKPC T F ++S+NG+SS+VRC P TGR HQIRVHLQ+LGHPILNDPIYN + AWG   G+ G    + K   EL+R
Sbjct:  201 LKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN-SVAWGPSRGRGGY---IPKTNEELLR 413
The following BLAST results are available for this feature:
BLAST of TCONS_00070285-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RUSD23.093e-8756.68RNA pseudouridylate synthase domain-containing pro... [more]
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